Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040873.1

Orthogroup ID

OG0007745

Physical Location & Seq

Genomic Coordinates Reverse (-)

640 .. 1807

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040873.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgtatttatcttttcaatgttgcttggttccggcaaataagtgtactcctctgcagcccccagaagatgctctgtttgcacatccgaggctctttagggcttgtgttccaccaggtatgcatcggtttagaggaaatatatgggattatgagagcagaccacaagtcatgcgagcattgggatatcccttaaagatgacagatagaattccagacattactgaggcaaggaacatcgaacttggacttgggctacagcttgctttcttgcatccatcgaagcacaaatttgagcaccctcgtttctgttatgagcgattagaatatgttggccaaaaaatccaggaccttgtgatggctgaaagattgctgatgaaacatttagatgctcctggaaagtggctggcagagagacaccgccgacttcttatgaacaaattctgtggaaggtatttgagggagaagcgcctccatcagtttatcatctattccgaacaggttatggatgcctacgagcacaaccgaagactaaggaatcctgccacaactgctattcagcaagccgttcatggcctctcatacactgtatatgggaagccagatgtaagacgcctcatgtttgaggttttcgattttgagcaaacacaacctaaagctgttaatgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0022613 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3

Protein Analysis

222

Amino Acids

26.24

Weight (kDa)

9.44

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48121 AT2G48121 AT4G37510
fragaria_vesca	FvH4_1g17270 FvH4_1g17270
malus_domestica	MD15G1293700.v1.1
prunus_persica	Prupe.6G223800_v2.0.a1
pyrus_communis	pycom15g25680
rosa_chinensis	RchiOBHm_Chr2g0107461
rosa_laevigata	RLG00000017580
rosa_multiflora	Rmu_sc0005152.1_g000009 Rmu_sc0025013.1_g000002 Rmu_sc0039159.1_g000001 Rmu_sc0040873.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136320
rosa_rugosa	Rorug02G0143700 Rorug02G0143800
rosa_samantha	Rh2AG193900 Rh2AG299800 Rh2BG206100 Rh2CG199100 Rh2DG201100 Rh2DG323800
rosa_wichuraiana	Rw2G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	3 cut(s)	207, 287, 437
AcyI	GRCGYC	1 cut(s)	610
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	17
AhdI	GACNNNNNGTC	1 cut(s)	164
AjnI	CCWGG	3 cut(s)	112, 342, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	2 cut(s)	259, 656
AluI	AGCT	2 cut(s)	259, 656
Alw21I	GWGCWC	2 cut(s)	297, 519
Alw26I	GTCTC	1 cut(s)	406
AoxI	GGCC	2 cut(s)	331, 571
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	3 cut(s)	207, 287, 437
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	297, 519
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	3 cut(s)	283, 349, 480
BceAI	ACGGC	1 cut(s)	548
BciT130I	CCWGG	3 cut(s)	114, 344, 393
BcoDI	GTCTC	1 cut(s)	406
BfmI	CTRYAG	2 cut(s)	53, 254
BfoI	RGCGCY	1 cut(s)	469
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	3 cut(s)	114, 344, 393
Bme18I	GGWCC	1 cut(s)	346
BmeRI	GACNNNNNGTC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	3 cut(s)	114, 344, 393
BmsI	GCATC	5 cut(s)	58, 130, 280, 376, 496
BpiI	GAAGAC	1 cut(s)	532
BsaHI	GRCGYC	1 cut(s)	610
BsaJI	CCNNGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
BseBI	CCWGG	3 cut(s)	114, 344, 393
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	3 cut(s)	82, 271, 511
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	333, 573
BsiHKAI	GWGCWC	2 cut(s)	297, 519
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	406
BsnI	GGCC	2 cut(s)	333, 573
Bsp1286I	GDGCHC	2 cut(s)	297, 519
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	2 cut(s)	333, 573
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	610
Bst2UI	CCWGG	3 cut(s)	114, 344, 393
Bst4CI	ACNGT	1 cut(s)	586
BstACI	GRCGYC	1 cut(s)	610
BstC8I	GCNNGC	4 cut(s)	174, 261, 405, 561
BstDEI	CTNAG	2 cut(s)	222, 530
BstF5I	GGATG	3 cut(s)	82, 271, 511
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	468
BstMAI	GTCTC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 548
BstNI	CCWGG	3 cut(s)	114, 344, 393
BstSCI	CCNGG	3 cut(s)	112, 342, 391
BstSFI	CTRYAG	2 cut(s)	53, 254
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	333, 573
BtsCI	GGATG	3 cut(s)	82, 271, 511
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	4 cut(s)	174, 261, 405, 561
CfoI	GCGC	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	1 cut(s)	618
CsiI	ACCWGGT	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	45
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	3 cut(s)	169, 569, 616
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	222, 530
DriI	GACNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	331
Eam1105I	GACNNNNNGTC	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	112, 342, 391
EcoRV	GATATC	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	123
FaeI	CATG	3 cut(s)	172, 572, 619
FatI	CATG	3 cut(s)	168, 568, 615
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	3 cut(s)	69, 258, 518
Fsp4HI	GCNGC	1 cut(s)	56
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	469
HaeIII	GGCC	2 cut(s)	333, 573
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	618
HhaI	GCGC	1 cut(s)	468
Hin1I	GRCGYC	1 cut(s)	610
Hin1II	CATG	3 cut(s)	172, 572, 619
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HinfI	GANTC	1 cut(s)	535
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	87, 493
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	4 cut(s)	55, 80, 121, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 548
HpyF3I	CTNAG	2 cut(s)	222, 530
Hsp92I	GRCGYC	1 cut(s)	610
Hsp92II	CATG	3 cut(s)	172, 572, 619
HspAI	GCGC	1 cut(s)	466
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	5 cut(s)	58, 130, 280, 376, 496
MabI	ACCWGGT	1 cut(s)	112
MboII	GAAGA	2 cut(s)	77, 537
MhlI	GDGCHC	2 cut(s)	297, 519
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	3 cut(s)	207, 287, 437
MluNI	TGGCCA	1 cut(s)	333
Mox20I	TGGCCA	1 cut(s)	333
Mph1103I	ATGCAT	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	2 cut(s)	191, 660
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	3 cut(s)	114, 344, 393
MvaI	CCWGG	3 cut(s)	114, 344, 393
MwoI	GCNNNNNNNGC	2 cut(s)	77, 548
NlaIII	CATG	3 cut(s)	172, 572, 619
NlaIV	GGNNCC	1 cut(s)	30
NsiI	ATGCAT	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	535
PfoI	TCCNGGA	2 cut(s)	342, 391
PkrI	GCNGC	1 cut(s)	57
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	3 cut(s)	112, 342, 391
PspGI	CCWGG	3 cut(s)	112, 342, 391
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	346
PspPPI	RGGWCCY	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	191, 660
SatI	GCNGC	1 cut(s)	56
Sau96I	GGNCC	1 cut(s)	346
ScrFI	CCNGG	3 cut(s)	114, 344, 393
SduI	GDGCHC	2 cut(s)	297, 519
SetI	ASST	8 cut(s)	118, 261, 351, 452, 501, 627, 652, 658
SexAI	ACCWGGT	1 cut(s)	112
SfaNI	GCATC	5 cut(s)	58, 130, 280, 376, 496
SfcI	CTRYAG	2 cut(s)	53, 254
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	3 cut(s)	207, 287, 437
SsiI	CCGC	1 cut(s)	418
StyD4I	CCNGG	3 cut(s)	112, 342, 391
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	3 cut(s)	237, 278, 630
TasI	AATT	3 cut(s)	207, 287, 437
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	2 cut(s)	191, 660
Tru9I	TTAA	2 cut(s)	191, 660
TscAI	CASTG	1 cut(s)	589
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	389, 446, 557
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	3 cut(s)	207, 287, 437
XmnI	GAANNNNTTC	1 cut(s)	437
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.