Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007745

Physical Location & Seq

Genomic Coordinates Reverse (-)

37404369 .. 37405569

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG299800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCATCGGTTTAGAGGAAATATATGGGATTATGAGAGCAGACCACAAGTCATGCGAGCATTGGGATATCCCTTAAAGATGTCAGATAGAATTCCAGACATTACTGAGGCAAGGAACATCGAACTTGGACTTGGGCTACAGCTTGCTTTCTTGCATCCATCGAAGCACAAATTTGAGCACCCTCGTTTTTGTTATGAGCGATTAGAATATGTTGGCCAAAAAATCCAGGACCTTGTGATGGCTGAAAGATTGCTGATGAAACATTTAGATGCTCCTGGAAAGTGGCTGGCAGAGAGACACCGCCGAACAATTGGGGCATCAAACAATTTAGTGCAGCAAAATGCAAATGTACCAACACCCTCAATTGTTGCAAGTGCTTCATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTCTTCTTCGCAGCCCACTGTTATCGGATCATCTCATACATCCAATACATTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0022613 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3

Protein Analysis

157

Amino Acids

17.77

Weight (kDa)

9.66

Isoelectric Point (pI)

62.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48121 AT2G48121 AT4G37510
fragaria_vesca	FvH4_1g17270 FvH4_1g17270
malus_domestica	MD15G1293700.v1.1
prunus_persica	Prupe.6G223800_v2.0.a1
pyrus_communis	pycom15g25680
rosa_chinensis	RchiOBHm_Chr2g0107461
rosa_laevigata	RLG00000017580
rosa_multiflora	Rmu_sc0005152.1_g000009 Rmu_sc0025013.1_g000002 Rmu_sc0039159.1_g000001 Rmu_sc0040873.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136320
rosa_rugosa	Rorug02G0143700 Rorug02G0143800
rosa_samantha	Rh2AG193900 Rh2AG299800 Rh2BG206100 Rh2CG199100 Rh2DG201100 Rh2DG323800
rosa_wichuraiana	Rw2G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	90, 170
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	238
AhdI	GACNNNNNGTC	1 cut(s)	47
AjnI	CCWGG	2 cut(s)	225, 274
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	451
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	334, 427
ApoI	RAATTY	2 cut(s)	90, 170
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	346, 439
BccI	CCATC	2 cut(s)	166, 232
BciT130I	CCWGG	2 cut(s)	227, 276
BcoDI	GTCTC	1 cut(s)	289
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	2 cut(s)	335, 428
BlsI	GCNGC	2 cut(s)	336, 429
Bme1390I	CCNGG	2 cut(s)	227, 276
Bme18I	GGWCC	1 cut(s)	229
BmeRI	GACNNNNNGTC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	227, 276
BmsI	GCATC	4 cut(s)	13, 163, 259, 326
BpiI	GAAGAC	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	227, 276
BseGI	GGATG	2 cut(s)	154, 455
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	96, 428
BseXI	GCAGC	2 cut(s)	346, 439
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	393, 443
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	97, 427
BspPI	GGATC	1 cut(s)	451
BssMI	GATC	2 cut(s)	393, 443
Bst2UI	CCWGG	2 cut(s)	227, 276
Bst4CI	ACNGT	1 cut(s)	436
BstC8I	GCNNGC	3 cut(s)	57, 144, 288
BstDEI	CTNAG	2 cut(s)	105, 414
BstF5I	GGATG	2 cut(s)	154, 455
BstKTI	GATC	2 cut(s)	396, 446
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	2 cut(s)	393, 443
BstNI	CCWGG	2 cut(s)	227, 276
BstSCI	CCNGG	2 cut(s)	225, 274
BstSFI	CTRYAG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	346, 439
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	154, 455
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	3 cut(s)	57, 144, 288
Cfr13I	GGNCC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	6 cut(s)	136, 142, 216, 242, 286, 430
CviKI_1	RGCY	6 cut(s)	136, 142, 216, 242, 286, 430
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	2 cut(s)	105, 414
DpnI	GATC	2 cut(s)	395, 445
DpnII	GATC	2 cut(s)	393, 443
DriI	GACNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	214
Eam1105I	GACNNNNNGTC	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	225, 274
EcoRV	GATATC	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	55
FaiI	YATR	8 cut(s)	23, 25, 33, 53, 195, 210, 453, 472
FatI	CATG	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	335, 428
FokI	GGATG	2 cut(s)	141, 442
Fsp4HI	GCNGC	2 cut(s)	335, 428
GluI	GCNGC	2 cut(s)	335, 428
HaeIII	GGCC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	393
Hpy188I	TCNGA	2 cut(s)	85, 443
Hpy188III	TCNNGA	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	4, 154, 334, 344, 371
HpyF3I	CTNAG	2 cut(s)	105, 414
Hsp92II	CATG	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	393, 443
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	6 cut(s)	108, 212, 239, 261, 272, 288
Lsp1109I	GCAGC	2 cut(s)	346, 439
LweI	GCATC	4 cut(s)	13, 163, 259, 326
MalI	GATC	2 cut(s)	395, 445
MboI	GATC	2 cut(s)	393, 443
MboII	GAAGA	2 cut(s)	411, 414
MfeI	CAATTG	2 cut(s)	309, 363
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	5 cut(s)	90, 170, 309, 325, 363
MluNI	TGGCCA	1 cut(s)	216
MnlI	CCTC	6 cut(s)	8, 100, 192, 370, 417, 423
Mox20I	TGGCCA	1 cut(s)	216
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	2 cut(s)	267, 469
Msp20I	TGGCCA	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	227, 276
MunI	CAATTG	2 cut(s)	309, 363
MvaI	CCWGG	2 cut(s)	227, 276
NdeII	GATC	2 cut(s)	393, 443
NlaIII	CATG	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	6
PfoI	TCCNGGA	2 cut(s)	225, 274
PkrI	GCNGC	2 cut(s)	336, 429
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	225, 274
PspGI	CCWGG	2 cut(s)	225, 274
PspPI	GGNCC	1 cut(s)	229
PspPPI	RGGWCCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	2 cut(s)	267, 469
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	2 cut(s)	335, 428
Sau3AI	GATC	2 cut(s)	393, 443
Sau96I	GGNCC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	227, 276
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	144, 234, 409, 415
SfaNI	GCATC	4 cut(s)	13, 163, 259, 326
SfcI	CTRYAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	267, 469
Sse9I	AATT	5 cut(s)	90, 170, 309, 325, 363
SsiI	CCGC	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	225, 274
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	120, 161
TasI	AATT	5 cut(s)	90, 170, 309, 325, 363
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	2 cut(s)	334, 427
TspDTI	ATGAA	2 cut(s)	272, 369
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	90, 170
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.