AT3G01150

polypyrimidine tract-binding

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
51496 .. 54544
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01150.4

Sequence Viewer

Length: 1200 bp
ATGTCGAGCTCAGGCCAAACTCAGTTCCGTTATACACAGACGCCGTCGAAGGTGGTTCATCTGCGGAATCTTCCATGGGAATGCGTCGAAGAGGAGCTCATCGACCTTTGCAAACGATTCGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGAATTTGCTGACTTGAATCAAGCTATATCAATGGTTTCGTATTATGCTTCATCTTCAGAGCCCGCACAGATTCGTGGGAAAACTGTCTATATTCAGTACTCTAATCGCCATGAGATTGTTAACAATCAGAGTCCTGGAGATGTCCCTGGAAATGTCCTCTTGGTTACCTTTGAAGGAGTGGAATCTCACGAAGTCAGCATCGATGTTATCCATCTGGTATTTTCTGCTTTTGGATTTGTGCATAAAATTGCCACATTTGAGAAAGCTGCTGGTTTCCAGGCACTAGTTCAATTTACTGATGTGGAGACTGCATCCGCGGCAAGGAGTGCGTTGGATGGCAGAAGTATACCCAGGTATCTGCTTTCCGCACATGTTGGTTCGTGCAGTTTGCGAATGTCTTATTCAGCTCATACTGATCTCAACATCAAGTTTCAGTCCCACCGGAGCAGAGATTACACAAATCCATACCTTCCAGTGAATCAGACCGCAATGGATGGGTCTATGCAGCCTGCTTTAGGTGCTGACGGCAAGAAAGTTGAATCTCAGAGCAACGTCCTTCTCGGTTTGATTGAGAATATGCAGTATGCTGTCACTGTGGATGTTCTTCACACGGTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAGAATGGTTCAACGCAAGCATTAATTCAATACTCTGATATACCAACAGCAGCAATGGCCAAAGAAGCACTGGAAGGACACTGCATTTATGACGGTGGCTACTGTAAGCTTCGACTATCATACTCTCGTCATACTGATCTGAATGTTAAGGCTTTTAGCGACAAAAGCAGAGACTATACACTTCCTGATCTAAGCCTACTTGTGGCACAAAAAGGTCCCGCGGTGTCGGGTTCTGCACCACCAGCAGGTTGGCAGAACCCGCAAGCGCAAAGTCAATACTCAGGTTATGGCGGAAGCCCATATATGTACCCATCATCTGATCCCAACGGGGCTTCACCCTCAGGTCAACCTCCTTACTATGGATGA

Protein Analysis

399

Amino Acids

43.59

Weight (kDa)

6.41

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_5 PF13893 103 - 184 9.8e-06 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_8 PF11835 117 - 186 2.1e-07 RRM-like domain
RRM_1 PF00076 124 - 183 4.9e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1070
AccB1I GGYRCC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 523
AccII CGCG 2 cut(s) 494, 1055
AclWI GGATC 1 cut(s) 1148
AcoI YGGCCR 1 cut(s) 891
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 2 cut(s) 41, 153
AdeI CACNNNGTG 1 cut(s) 790
AfaI GTAC 2 cut(s) 275, 1142
AfiI CCNNNNNNNGG 5 cut(s) 498, 692, 1036, 1079, 1193
AflIII ACRYGT 1 cut(s) 547
AgsI TTSAA 6 cut(s) 193, 350, 467, 716, 846, 863
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 4 cut(s) 310, 322, 453, 527
AluBI AGCT 7 cut(s) 9, 97, 170, 200, 443, 584, 943
AluI AGCT 7 cut(s) 9, 97, 170, 200, 443, 584, 943
Alw21I GWGCWC 2 cut(s) 11, 99
Alw26I GTCTC 2 cut(s) 476, 999
AlwI GGATC 1 cut(s) 1148
AoxI GGCC 2 cut(s) 13, 891
ApeKI GCWGC 3 cut(s) 443, 682, 884
ApoI RAATTY 1 cut(s) 179
AseI ATTAAT 1 cut(s) 857
AspLEI GCGC 2 cut(s) 155, 1102
AspS9I GGNCC 1 cut(s) 1049
AsuHPI GGTGA 1 cut(s) 1161
AvaII GGWCC 1 cut(s) 1049
AxyI CCTNAGG 1 cut(s) 1174
BaeI ACNNNNGTAYC 2 cut(s) 515, 548
BalI TGGCCA 1 cut(s) 893
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 3 cut(s) 11, 99, 240
Bbv12I GWGCWC 2 cut(s) 11, 99
BbvI GCAGC 3 cut(s) 430, 694, 896
BccI CCATC 4 cut(s) 396, 506, 665, 1153
BceAI ACGGC 2 cut(s) 28, 718
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 4 cut(s) 312, 324, 455, 529
BcoDI GTCTC 2 cut(s) 476, 999
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 1 cut(s) 461
BfoI RGCGCY 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 1070
BisI GCNGC 4 cut(s) 444, 495, 683, 885
BlsI GCNGC 4 cut(s) 445, 496, 684, 886
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 4 cut(s) 312, 324, 455, 529
Bme18I GGWCC 1 cut(s) 1049
BmgT120I GGNCC 1 cut(s) 1049
BmiI GGNNCC 2 cut(s) 154, 1051
BmrFI CCNGG 4 cut(s) 312, 324, 455, 529
BmsI GCATC 2 cut(s) 384, 497
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 10
Bsa29I ATCGAT 1 cut(s) 378
BsaHI GRCGYC 2 cut(s) 41, 153
BsaJI CCNNGG 5 cut(s) 74, 322, 492, 527, 1053
BsaWI WCCGGW 1 cut(s) 618
Bsc4I CCNNNNNNNGG 5 cut(s) 498, 692, 1036, 1079, 1193
Bse1I ACTGG 2 cut(s) 650, 909
Bse21I CCTNAGG 1 cut(s) 1174
Bse3DI GCAATG 3 cut(s) 151, 672, 894
BseBI CCWGG 4 cut(s) 312, 324, 455, 529
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 5 cut(s) 74, 322, 492, 527, 1053
BseGI GGATG 4 cut(s) 488, 517, 676, 781
BseLI CCNNNNNNNGG 5 cut(s) 498, 692, 1036, 1079, 1193
BseMI GCAATG 3 cut(s) 151, 672, 894
BseMII CTCAG 5 cut(s) 24, 35, 734, 1128, 1188
BseNI ACTGG 2 cut(s) 650, 909
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 430, 694, 896
BsgI GTGCAG 2 cut(s) 580, 1053
Bsh1236I CGCG 2 cut(s) 494, 1055
BshFI GGCC 2 cut(s) 15, 893
BshNI GGYRCC 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 11, 99
BsiSI CCGG 1 cut(s) 619
BslFI GGGAC 3 cut(s) 305, 598, 1035
BslI CCNNNNNNNGG 5 cut(s) 498, 692, 1036, 1079, 1193
BsmAI GTCTC 2 cut(s) 476, 999
BsmFI GGGAC 3 cut(s) 305, 598, 1035
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 2 cut(s) 15, 893
Bsp1286I GDGCHC 3 cut(s) 11, 99, 240
Bsp143I GATC 5 cut(s) 126, 592, 970, 1021, 1153
Bsp19I CCATGG 1 cut(s) 74
BspANI GGCC 2 cut(s) 15, 893
BspCNI CTCAG 5 cut(s) 23, 34, 733, 1127, 1187
BspDI ATCGAT 1 cut(s) 378
BspFNI CGCG 2 cut(s) 494, 1055
BspLI GGNNCC 2 cut(s) 154, 1051
BspMI ACCTGC 1 cut(s) 1070
BspPI GGATC 1 cut(s) 1148
BspT107I GGYRCC 1 cut(s) 152
BsrDI GCAATG 3 cut(s) 151, 672, 894
BsrI ACTGG 2 cut(s) 650, 909
BssECI CCNNGG 5 cut(s) 74, 322, 492, 527, 1053
BssMI GATC 5 cut(s) 126, 592, 970, 1021, 1153
BssNAI GTATAC 1 cut(s) 524
BssNI GRCGYC 2 cut(s) 41, 153
BssT1I CCWWGG 1 cut(s) 74
Bst1107I GTATAC 1 cut(s) 524
Bst2UI CCWGG 4 cut(s) 312, 324, 455, 529
Bst4CI ACNGT 6 cut(s) 262, 772, 790, 811, 929, 938
Bst6I CTCTTC 1 cut(s) 84
BstACI GRCGYC 2 cut(s) 41, 153
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 4 cut(s) 240, 687, 852, 1098
BstDEI CTNAG 6 cut(s) 10, 21, 720, 1025, 1114, 1174
BstDSI CCRYGG 3 cut(s) 74, 492, 1053
BstEII GGTNACC 1 cut(s) 340
BstENI CCTNNNNNAGG 1 cut(s) 690
BstF5I GGATG 4 cut(s) 488, 517, 676, 781
BstFNI CGCG 2 cut(s) 494, 1055
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 2 cut(s) 155, 1102
BstKTI GATC 5 cut(s) 129, 595, 973, 1024, 1156
BstMAI GTCTC 2 cut(s) 476, 999
BstMBI GATC 5 cut(s) 126, 592, 970, 1021, 1153
BstNI CCWGG 4 cut(s) 312, 324, 455, 529
BstNSI RCATGY 1 cut(s) 551
BstPI GGTNACC 1 cut(s) 340
BstSCI CCNGG 4 cut(s) 310, 322, 453, 527
BstUI CGCG 2 cut(s) 494, 1055
BstV1I GCAGC 3 cut(s) 430, 694, 896
BstXI CCANNNNNNTGG 1 cut(s) 1083
BstZ17I GTATAC 1 cut(s) 524
Bsu15I ATCGAT 1 cut(s) 378
Bsu36I CCTNAGG 1 cut(s) 1174
BsuRI GGCC 2 cut(s) 15, 893
BsuTUI ATCGAT 1 cut(s) 378
BtgI CCRYGG 3 cut(s) 74, 492, 1053
BtsCI GGATG 4 cut(s) 488, 517, 676, 781
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 4 cut(s) 657, 768, 902, 913
BveI ACCTGC 1 cut(s) 1070
Cac8I GCNNGC 4 cut(s) 240, 687, 852, 1098
CfoI GCGC 2 cut(s) 155, 1102
Cfr13I GGNCC 1 cut(s) 1049
Cfr42I CCGCGG 2 cut(s) 495, 1056
ClaI ATCGAT 1 cut(s) 378
CseI GACGC 2 cut(s) 49, 73
Csp6I GTAC 2 cut(s) 274, 1141
CviAII CATG 3 cut(s) 75, 287, 548
CviQI GTAC 2 cut(s) 274, 1141
DdeI CTNAG 6 cut(s) 10, 21, 720, 1025, 1114, 1174
DinI GGCGCC 1 cut(s) 154
DpnI GATC 5 cut(s) 128, 594, 972, 1023, 1155
DpnII GATC 5 cut(s) 126, 592, 970, 1021, 1153
DraIII CACNNNGTG 1 cut(s) 790
EaeI YGGCCR 1 cut(s) 891
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EciI GGCGGA 1 cut(s) 1140
Ecl136II GAGCTC 2 cut(s) 9, 97
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 3 cut(s) 11, 99, 240
Eco47I GGWCC 1 cut(s) 1049
Eco53kI GAGCTC 2 cut(s) 9, 97
Eco57I CTGAAG 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 1174
Eco91I GGTNACC 1 cut(s) 340
EcoICRI GAGCTC 2 cut(s) 9, 97
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoO109I RGGNCCY 1 cut(s) 1049
EcoO65I GGTNACC 1 cut(s) 340
EcoRII CCWGG 4 cut(s) 310, 322, 453, 527
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 3 cut(s) 11, 99, 240
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 3 cut(s) 78, 290, 551
FaqI GGGAC 3 cut(s) 305, 598, 1035
FatI CATG 3 cut(s) 74, 286, 547
FauI CCCGC 3 cut(s) 247, 1060, 1101
FauNDI CATATG 1 cut(s) 802
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 4 cut(s) 444, 495, 683, 885
FokI GGATG 4 cut(s) 475, 524, 683, 788
FriOI GRGCYC 3 cut(s) 11, 99, 240
Fsp4HI GCNGC 4 cut(s) 444, 495, 683, 885
FspBI CTAG 1 cut(s) 461
GlaI GCGC 2 cut(s) 154, 1101
GluI GCNGC 4 cut(s) 444, 495, 683, 885
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 2 cut(s) 15, 893
HapII CCGG 1 cut(s) 619
HgaI GACGC 2 cut(s) 49, 73
HhaI GCGC 2 cut(s) 155, 1102
Hin1I GRCGYC 2 cut(s) 41, 153
Hin1II CATG 3 cut(s) 78, 290, 551
Hin6I GCGC 2 cut(s) 153, 1100
HinP1I GCGC 2 cut(s) 153, 1100
HincII GTYRAC 2 cut(s) 298, 1181
HindII GTYRAC 2 cut(s) 298, 1181
HindIII AAGCTT 2 cut(s) 168, 941
HinfI GANTC 8 cut(s) 67, 117, 193, 247, 307, 359, 655, 716
HpaI GTTAAC 1 cut(s) 298
HpaII CCGG 1 cut(s) 619
HphI GGTGA 1 cut(s) 1161
Hpy166II GTNNAC 3 cut(s) 298, 524, 1181
Hpy188I TCNGA 7 cut(s) 235, 306, 660, 723, 871, 975, 1153
Hpy188III TCNNGA 3 cut(s) 365, 814, 1019
Hpy8I GTNNAC 3 cut(s) 298, 524, 1181
Hpy99I CGWCG 3 cut(s) 49, 89, 179
HpyAV CCTTC 5 cut(s) 43, 344, 656, 743, 902
HpyCH4III ACNGT 6 cut(s) 262, 772, 790, 811, 929, 938
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 9 cut(s) 111, 418, 488, 561, 682, 757, 800, 918, 1070
HpyF3I CTNAG 6 cut(s) 10, 21, 720, 1025, 1114, 1174
HpySE526I ACGT 1 cut(s) 729
Hsp92I GRCGYC 2 cut(s) 41, 153
Hsp92II CATG 3 cut(s) 78, 290, 551
HspAI GCGC 2 cut(s) 153, 1100
KasI GGCGCC 1 cut(s) 152
KspAI GTTAAC 1 cut(s) 298
KspI CCGCGG 2 cut(s) 495, 1056
Kzo9I GATC 5 cut(s) 126, 592, 970, 1021, 1153
LmnI GCTCC 2 cut(s) 94, 621
Lsp1109I GCAGC 3 cut(s) 430, 694, 896
LweI GCATC 2 cut(s) 384, 497
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 2 cut(s) 340, 766
MalI GATC 5 cut(s) 128, 594, 972, 1023, 1155
MboI GATC 5 cut(s) 126, 592, 970, 1021, 1153
MboII GAAGA 6 cut(s) 62, 101, 222, 773, 829, 847
MhlI GDGCHC 3 cut(s) 11, 99, 240
MlsI TGGCCA 1 cut(s) 893
MluCI AATT 4 cut(s) 179, 423, 467, 858
MluNI TGGCCA 1 cut(s) 893
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 4 cut(s) 85, 344, 1183, 1194
Mox20I TGGCCA 1 cut(s) 893
MscI TGGCCA 1 cut(s) 893
MseI TTAA 3 cut(s) 297, 857, 981
MslI CAYNNNNRTG 1 cut(s) 79
Msp20I TGGCCA 1 cut(s) 893
MspA1I CMGCKG 2 cut(s) 494, 1055
MspI CCGG 1 cut(s) 619
MspR9I CCNGG 4 cut(s) 312, 324, 455, 529
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 4 cut(s) 312, 324, 455, 529
MvnI CGCG 2 cut(s) 494, 1055
NarI GGCGCC 1 cut(s) 153
NcoI CCATGG 1 cut(s) 74
NdeI CATATG 1 cut(s) 802
NdeII GATC 5 cut(s) 126, 592, 970, 1021, 1153
NlaIII CATG 3 cut(s) 78, 290, 551
NlaIV GGNNCC 2 cut(s) 154, 1051
NmuCI GTSAC 1 cut(s) 766
NspI RCATGY 1 cut(s) 551
PciI ACATGT 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 7 cut(s) 67, 117, 193, 247, 359, 655, 716
PflFI GACNNNGTC 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 4 cut(s) 445, 496, 684, 886
PleI GAGTC 1 cut(s) 315
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 1049
PscI ACATGT 1 cut(s) 547
PshBI ATTAAT 1 cut(s) 857
Psp124BI GAGCTC 2 cut(s) 11, 99
Psp5II RGGWCCY 1 cut(s) 1049
Psp6I CCWGG 4 cut(s) 310, 322, 453, 527
PspEI GGTNACC 1 cut(s) 340
PspGI CCWGG 4 cut(s) 310, 322, 453, 527
PspN4I GGNNCC 2 cut(s) 154, 1051
PspPI GGNCC 1 cut(s) 1049
PspPPI RGGWCCY 1 cut(s) 1049
PsyI GACNNNGTC 1 cut(s) 43
RsaI GTAC 2 cut(s) 275, 1142
RsaNI GTAC 2 cut(s) 274, 1141
RseI CAYNNNNRTG 1 cut(s) 79
SacI GAGCTC 2 cut(s) 11, 99
SacII CCGCGG 2 cut(s) 495, 1056
SaqAI TTAA 3 cut(s) 297, 857, 981
SatI GCNGC 4 cut(s) 444, 495, 683, 885
Sau3AI GATC 5 cut(s) 126, 592, 970, 1021, 1153
Sau96I GGNCC 1 cut(s) 1049
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 4 cut(s) 312, 324, 455, 529
SduI GDGCHC 3 cut(s) 11, 99, 240
SfaNI GCATC 2 cut(s) 384, 497
SfoI GGCGCC 1 cut(s) 154
Sfr303I CCGCGG 2 cut(s) 495, 1056
SgrBI CCGCGG 2 cut(s) 495, 1056
SinI GGWCC 1 cut(s) 1049
SmiMI CAYNNNNRTG 1 cut(s) 79
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 4 cut(s) 179, 423, 467, 858
SspDI GGCGCC 1 cut(s) 152
SspMI CTAG 1 cut(s) 461
SstI GAGCTC 2 cut(s) 11, 99
StyD4I CCNGG 4 cut(s) 310, 322, 453, 527
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 6 cut(s) 262, 772, 790, 811, 929, 938
TaiI ACGT 1 cut(s) 732
TaqI TCGA 7 cut(s) 5, 47, 87, 102, 177, 378, 946
TasI AATT 4 cut(s) 179, 423, 467, 858
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 7 cut(s) 67, 117, 193, 247, 359, 655, 716
Tru1I TTAA 3 cut(s) 297, 857, 981
Tru9I TTAA 3 cut(s) 297, 857, 981
TscAI CASTG 4 cut(s) 657, 775, 909, 920
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 3 cut(s) 443, 682, 884
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 2 cut(s) 47, 216
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 4 cut(s) 657, 775, 909, 920
Tth111I GACNNNGTC 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 1049
VspI ATTAAT 1 cut(s) 857
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 2 cut(s) 901, 1080
XmiI GTMKAC 1 cut(s) 523
XspI CTAG 1 cut(s) 461
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.