Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004917

Physical Location & Seq

Genomic Coordinates Forward (+)

66133128 .. 66135014

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0531300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGGTCTCTTGTTAAGCTCATTGATGCTTTGCTCTTCCTCTTGCTCCTCGCGATCGCTTTTGAAACCCCATTGATTGAAGGGCAAGCATGTCTCCCTATCACCCTCTACCCAGATTTTCTCGTCGAACTCCGGAGCTGGTACGCAGGAGAAGTTGGTGACTACCTCATGACTGAGACGCCGGATTTCTACGTCGGGATCATATGGGTTGAGCTTCTTTTTCAATGGCCTCTGGTGCTTGTGAATCTTTATGGCATTTTAGCTGGGAAGCATTGGTTCAACACCACGTGCTTGAGTTATGGCATTTCTCTATTCACCGGCATGGTGCCTATATTTGCAGAACTCACAAGATCAGGAAGGGCTCCGGAAAAGTTATTGACGGTGTACTATTCGTTCTTGAGTGTGGGTGTTGTAGCCATACTTCGTGGATTGCTTCCCAACTCATCATCGACCAAGTTCTCTTCTTCAACCATTGGCAAGAGACCTGCCTCCGGTAGGAAGAAGAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

170

Amino Acids

18.89

Weight (kDa)

8.55

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	40 - 118	4.1e-11	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01150 AT3G01150 AT3G01150 AT3G01150
fragaria_vesca	FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200
malus_domestica	MD00G1125500.v1.1 MD00G1167800.v1.1 MD09G1053000.v1.1
prunus_persica	Prupe.3G265700_v2.0.a1 Prupe.3G265700_v2.0.a1
pyrus_communis	pycom111g04420 pycom17g04840
rosa_chinensis	RchiOBHm_Chr2g0167691
rosa_laevigata	RLG00000021746
rosa_multiflora	Rmu_sc0001970.1_g000017 Rmu_sc0002143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083330
rosa_rugosa	Rorug02G0531300 Rorug02G0531400
rosa_samantha	Rh2AG600300 Rh2BG610800 Rh2CG581200 Rh2DG623500
rosa_wichuraiana	Rw2G049830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	53
AccIII	TCCGGA	2 cut(s)	132, 364
AclWI	GGATC	1 cut(s)	206
AcvI	CACGTG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	179
AdeI	CACNNNGTG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	143, 386
AfiI	CCNNNNNNNGG	2 cut(s)	491, 495
AgsI	TTSAA	5 cut(s)	65, 80, 224, 280, 468
AluBI	AGCT	4 cut(s)	19, 138, 214, 263
AluI	AGCT	4 cut(s)	19, 138, 214, 263
Alw26I	GTCTC	4 cut(s)	12, 98, 170, 475
AlwI	GGATC	1 cut(s)	206
Aor13HI	TCCGGA	2 cut(s)	132, 364
AoxI	GGCC	1 cut(s)	227
AsiSI	GCGATCGC	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	94, 170, 307
BanI	GGYRCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	364
BarI	GAAGNNNNNNTAC	2 cut(s)	405, 437
BbrPI	CACGTG	1 cut(s)	288
BcoDI	GTCTC	4 cut(s)	12, 98, 170, 475
BfuAI	ACCTGC	1 cut(s)	493
BmiI	GGNNCC	2 cut(s)	327, 363
BmsI	GCATC	1 cut(s)	16
BpuEI	CTTGAG	2 cut(s)	313, 418
BsaAI	YACGTR	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	179
BsaI	GGTCTC	2 cut(s)	12, 475
BsaWI	WCCGGW	3 cut(s)	132, 364, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	491, 495
Bse118I	RCCGGY	1 cut(s)	317
BseAI	TCCGGA	2 cut(s)	132, 364
BseLI	CCNNNNNNNGG	2 cut(s)	491, 495
BseMII	CTCAG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	5 cut(s)	133, 182, 318, 365, 492
BslI	CCNNNNNNNGG	2 cut(s)	491, 495
BsmAI	GTCTC	4 cut(s)	12, 98, 170, 475
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	229
Bso31I	GGTCTC	2 cut(s)	12, 475
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp13I	TCCGGA	2 cut(s)	132, 364
Bsp143I	GATC	3 cut(s)	54, 198, 350
Bsp68I	TCGCGA	1 cut(s)	53
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	166
BspEI	TCCGGA	2 cut(s)	132, 364
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	327, 363
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	2 cut(s)	12, 475
BsrFI	RCCGGY	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	317
BssMI	GATC	3 cut(s)	54, 198, 350
BssNI	GRCGYC	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	3 cut(s)	41, 466, 497
BstACI	GRCGYC	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	3 cut(s)	57, 201, 353
BstMAI	GTCTC	4 cut(s)	12, 98, 170, 475
BstMBI	GATC	3 cut(s)	54, 198, 350
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	93
BstUI	CGCG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	229
BtuMI	TCGCGA	1 cut(s)	53
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	317
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	142, 385
CviAII	CATG	3 cut(s)	90, 169, 322
CviJI	RGCY	7 cut(s)	19, 138, 214, 229, 263, 362, 416
CviKI_1	RGCY	7 cut(s)	19, 138, 214, 229, 263, 362, 416
CviQI	GTAC	2 cut(s)	142, 385
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	56, 200, 352
DpnII	GATC	3 cut(s)	54, 198, 350
DraIII	CACNNNGTG	1 cut(s)	288
Eam1104I	CTCTTC	3 cut(s)	41, 466, 497
EarI	CTCTTC	3 cut(s)	41, 466, 497
Eco24I	GRGCYC	1 cut(s)	364
Eco31I	GGTCTC	2 cut(s)	12, 475
Eco72I	CACGTG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	364
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	3 cut(s)	93, 172, 325
FaiI	YATR	9 cut(s)	91, 170, 203, 205, 252, 300, 323, 332, 419
FatI	CATG	3 cut(s)	89, 168, 321
FauNDI	CATATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	364
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	5 cut(s)	133, 182, 318, 365, 492
HgaI	GACGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	3 cut(s)	93, 172, 325
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	5 cut(s)	133, 182, 318, 365, 492
HphI	GGTGA	3 cut(s)	94, 170, 307
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188III	TCNNGA	7 cut(s)	52, 133, 169, 196, 354, 365, 397
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	2 cut(s)	128, 197
HpyAV	CCTTC	2 cut(s)	74, 351
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	2 cut(s)	192, 287
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	192, 287
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	3 cut(s)	93, 172, 325
Kpn2I	TCCGGA	2 cut(s)	132, 364
Kzo9I	GATC	3 cut(s)	54, 198, 350
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	3 cut(s)	51, 135, 367
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	2 cut(s)	192, 287
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	56, 200, 352
MboI	GATC	3 cut(s)	54, 198, 350
MboII	GAAGA	4 cut(s)	28, 453, 456, 511
MhlI	GDGCHC	1 cut(s)	364
MnlI	CCTC	6 cut(s)	50, 59, 116, 176, 240, 499
MroI	TCCGGA	2 cut(s)	132, 364
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	5 cut(s)	133, 182, 318, 365, 492
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	3 cut(s)	54, 198, 350
NlaIII	CATG	3 cut(s)	93, 172, 325
NlaIV	GGNNCC	2 cut(s)	327, 363
NmuCI	GTSAC	1 cut(s)	158
NruI	TCGCGA	1 cut(s)	53
NspI	RCATGY	1 cut(s)	93
PagI	TCATGA	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	244
Ple19I	CGATCG	1 cut(s)	57
PmaCI	CACGTG	1 cut(s)	288
PmlI	CACGTG	1 cut(s)	288
Ppu21I	YACGTR	1 cut(s)	288
PspCI	CACGTG	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	327, 363
PsrI	GAACNNNNNNTAC	2 cut(s)	377, 409
PvuI	CGATCG	1 cut(s)	57
RgaI	GCGATCGC	1 cut(s)	57
RruI	TCGCGA	1 cut(s)	53
RsaI	GTAC	2 cut(s)	143, 386
RsaNI	GTAC	2 cut(s)	142, 385
RseI	CAYNNNNRTG	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	54, 198, 350
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	8 cut(s)	21, 140, 168, 195, 216, 265, 290, 487
SfaAI	GCGATCGC	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	16
SgfI	GCGATCGC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	292, 397
SmoI	CTYRAG	2 cut(s)	292, 397
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	2 cut(s)	195, 290
TaqI	TCGA	2 cut(s)	126, 449
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
XagI	CCTNNNNNAGG	1 cut(s)	493
XceI	RCATGY	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.