Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004917

Physical Location & Seq

Genomic Coordinates Forward (+)

36350747 .. 36355800

Gene Structure 5054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48200.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTTCCTGGGAATGTGTTGCTGGTTACCATCGAGGGTGTTGAAGCTGGTGATGTCAGCATTGATGTCATTCACTTGTTTGGAATTATTATCTTGTACGTCATACTCCTTTCTATGGTCACCCATATATGCACAGGTGTTTTCTGCTTTTGGGTTTGTGCACAAGATTGCTACTTTTGAAAAGGCTGCCGGCTTCCAGGCATTGATTCAGTTCAGTGATGCTGACACTGCATCTGCGGCGAGGAACGCCTTGGATGGAAGAAGTATACCCAGGTACTTGCTTCCAGAGCATGTCGGTTCATGCCATTTGCGTATCTCGTATTCTGCACACACTGATCTGAACATCAAGTTCCAGTCACACAGAAGCAGGGATTACACGAATCCATACCTACCTGTAAATCCCACTGCAATTGAGGGAGTTGTACAGCCTGCAGTAGGTCCTGATGGAAAGAAGAAAGAGATGGAGAGTAATGTGCTTCTGGCTTCCATTGAAAATATGCAGTATGCTGTGACTGTGGATGTTATTCACACGGTATTTTCAGCATTTGGCACTGTACAAAAAATTGCTATATTCGAGAAGAATGGTCAAACACAGGCATTAGTTCAATACCCTGATATTGCTACCGCAGCCGTTGCCAGAGAAGCTCTAGAGGGACACTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTATAGTGACAAAAGTAGAGATTATACAATCCCAGATGCTAGTTTGCTTGCGGTGCAATCTGGCTACCCTGCAGCTCCTGCAGCTTGGCAGAATGCTCAGGCTTCGCCAGTGTACCATGGAAATGAATATAGTGCTGCAGCAGCTGGACCGGCTGAAGGTCCTCCTGGAGGTCCTCCCGGACAAGTGCCATCATGGGATCCAAACATGCAAGCTGGCCGACCATCGTTTGTTTCTGTTCCCAGCACCTTTCCTGGTCAGATATATCCCACATCATCAGGTGGCCCGGTATATGCCTCAGCACCAATGCCTCCGGGCTCATCACCAATGCATCAGCCAGGTGCTCCACCGCATATGCGACCAGGTGGTGCGTCACCCCCAGGTGTTCGACCTCCTGGTGCTTCACCTTCTTATTACGGCCAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

385

Amino Acids

41.06

Weight (kDa)

6.85

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	21 - 70	9.9e-09	RNA recognition motif
RRM_8	PF11835	242 - 312	4.5e-07	RRM-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01150 AT3G01150 AT3G01150 AT3G01150
fragaria_vesca	FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200
malus_domestica	MD00G1125500.v1.1 MD00G1167800.v1.1 MD09G1053000.v1.1
prunus_persica	Prupe.3G265700_v2.0.a1 Prupe.3G265700_v2.0.a1
pyrus_communis	pycom111g04420 pycom17g04840
rosa_chinensis	RchiOBHm_Chr2g0167691
rosa_laevigata	RLG00000021746
rosa_multiflora	Rmu_sc0001970.1_g000017 Rmu_sc0002143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083330
rosa_rugosa	Rorug02G0531300 Rorug02G0531400
rosa_samantha	Rh2AG600300 Rh2BG610800 Rh2CG581200 Rh2DG623500
rosa_wichuraiana	Rw2G049830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AciI	CCGC	4 cut(s)	236, 624, 779, 1076
AclWI	GGATC	2 cut(s)	920, 933
AcoI	YGGCCR	2 cut(s)	943, 1144
AcuI	CTGAAG	1 cut(s)	903
AfaI	GTAC	5 cut(s)	97, 275, 423, 555, 842
AfiI	CCNNNNNNNGG	4 cut(s)	114, 434, 884, 896
AgsI	TTSAA	4 cut(s)	43, 179, 491, 605
AjnI	CCWGG	9 cut(s)	6, 195, 269, 892, 979, 1063, 1087, 1105, 1120
AluBI	AGCT	7 cut(s)	46, 644, 685, 803, 812, 872, 941
AluI	AGCT	7 cut(s)	46, 644, 685, 803, 812, 872, 941
Alw21I	GWGCWC	2 cut(s)	162, 1072
Alw44I	GTGCAC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	920, 933
AlwNI	CAGNNNCTG	2 cut(s)	806, 872
AoxI	GGCC	3 cut(s)	943, 1009, 1144
ApaLI	GTGCAC	1 cut(s)	158
ApeKI	GCWGC	7 cut(s)	185, 626, 800, 809, 863, 866, 869
AspS9I	GGNCC	5 cut(s)	437, 875, 887, 899, 1010
AsuC2I	CCSGG	3 cut(s)	906, 1013, 1041
AsuHPI	GGTGA	5 cut(s)	61, 111, 1041, 1092, 1122
AvaII	GGWCC	4 cut(s)	437, 875, 887, 899
BaeGI	GKGCMC	1 cut(s)	162
BamHI	GGATCC	1 cut(s)	925
BanII	GRGCYC	1 cut(s)	1046
Bbv12I	GWGCWC	2 cut(s)	162, 1072
BbvCI	CCTCAGC	1 cut(s)	1024
BbvI	GCAGC	7 cut(s)	172, 638, 812, 821, 850, 878, 881
BccI	CCATC	7 cut(s)	37, 248, 437, 454, 662, 925, 958
BceAI	ACGGC	1 cut(s)	614
BciT130I	CCWGG	9 cut(s)	8, 197, 271, 894, 981, 1065, 1089, 1107, 1122
BcnI	CCSGG	3 cut(s)	906, 1013, 1041
BfaI	CTAG	2 cut(s)	647, 768
BfmI	CTRYAG	4 cut(s)	429, 798, 807, 864
BisI	GCNGC	8 cut(s)	186, 237, 627, 801, 810, 864, 867, 870
BlsI	GCNGC	8 cut(s)	187, 238, 628, 802, 811, 865, 868, 871
Bme18I	GGWCC	4 cut(s)	437, 875, 887, 899
BmgT120I	GGNCC	5 cut(s)	437, 875, 887, 899, 1010
BmiI	GGNNCC	1 cut(s)	927
BmsI	GCATC	4 cut(s)	208, 239, 754, 1066
BpmI	CTGGAG	1 cut(s)	915
Bpu10I	CCTNAGC	2 cut(s)	825, 1024
BpuMI	CCSGG	3 cut(s)	906, 1013, 1041
BsaJI	CCNNGG	5 cut(s)	7, 249, 269, 844, 1105
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 434, 884, 896
Bse118I	RCCGGY	2 cut(s)	188, 877
Bse1I	ACTGG	2 cut(s)	352, 836
BseBI	CCWGG	9 cut(s)	8, 197, 271, 894, 981, 1065, 1089, 1107, 1122
BseDI	CCNNGG	5 cut(s)	7, 249, 269, 844, 1105
BseGI	GGATG	2 cut(s)	259, 523
BseLI	CCNNNNNNNGG	4 cut(s)	114, 434, 884, 896
BseMII	CTCAG	2 cut(s)	839, 1038
BseNI	ACTGG	2 cut(s)	352, 836
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	7 cut(s)	172, 638, 812, 821, 850, 878, 881
BseYI	CCCAGC	1 cut(s)	968
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	945, 1011, 1146
BsiHKAI	GWGCWC	2 cut(s)	162, 1072
BsiSI	CCGG	5 cut(s)	189, 878, 906, 1013, 1040
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	4 cut(s)	114, 434, 884, 896
BsmFI	GGGAC	1 cut(s)	666
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	3 cut(s)	945, 1011, 1146
Bsp1286I	GDGCHC	3 cut(s)	162, 1046, 1072
Bsp1407I	TGTACA	2 cut(s)	421, 553
Bsp143I	GATC	3 cut(s)	334, 712, 925
Bsp19I	CCATGG	1 cut(s)	844
BspACI	CCGC	4 cut(s)	236, 624, 779, 1076
BspANI	GGCC	3 cut(s)	945, 1011, 1146
BspCNI	CTCAG	2 cut(s)	838, 1037
BspLI	GGNNCC	1 cut(s)	927
BspMAI	CTGCAG	4 cut(s)	433, 802, 811, 868
BspPI	GGATC	2 cut(s)	920, 933
BsrFI	RCCGGY	2 cut(s)	188, 877
BsrGI	TGTACA	2 cut(s)	421, 553
BsrI	ACTGG	2 cut(s)	352, 836
BssAI	RCCGGY	2 cut(s)	188, 877
BssECI	CCNNGG	5 cut(s)	7, 249, 269, 844, 1105
BssMI	GATC	3 cut(s)	334, 712, 925
BssNAI	GTATAC	1 cut(s)	266
BssT1I	CCWWGG	2 cut(s)	249, 844
Bst1107I	GTATAC	1 cut(s)	266
Bst2UI	CCWGG	9 cut(s)	8, 197, 271, 894, 981, 1065, 1089, 1107, 1122
Bst4CI	ACNGT	3 cut(s)	514, 532, 553
BstAPI	GCANNNNNTGC	2 cut(s)	632, 806
BstAUI	TGTACA	2 cut(s)	421, 553
BstC8I	GCNNGC	5 cut(s)	190, 429, 777, 939, 943
BstDEI	CTNAG	2 cut(s)	825, 1024
BstDSI	CCRYGG	1 cut(s)	844
BstEII	GGTNACC	2 cut(s)	24, 117
BstENI	CCTNNNNNAGG	2 cut(s)	432, 894
BstF5I	GGATG	2 cut(s)	259, 523
BstKTI	GATC	3 cut(s)	337, 715, 928
BstMBI	GATC	3 cut(s)	334, 712, 925
BstNI	CCWGG	9 cut(s)	8, 197, 271, 894, 981, 1065, 1089, 1107, 1122
BstNSI	RCATGY	2 cut(s)	293, 937
BstPI	GGTNACC	2 cut(s)	24, 117
BstSFI	CTRYAG	4 cut(s)	429, 798, 807, 864
BstSLI	GKGCMC	1 cut(s)	162
BstV1I	GCAGC	7 cut(s)	172, 638, 812, 821, 850, 878, 881
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
BstZ17I	GTATAC	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	945, 1011, 1146
BtgI	CCRYGG	1 cut(s)	844
BtsCI	GGATG	2 cut(s)	259, 523
BtsI	GCAGTG	3 cut(s)	225, 402, 655
BtsIMutI	CAGTG	7 cut(s)	220, 225, 330, 402, 549, 655, 843
Cac8I	GCNNGC	5 cut(s)	190, 429, 777, 939, 943
CaiI	CAGNNNCTG	2 cut(s)	806, 872
Cfr10I	RCCGGY	2 cut(s)	188, 877
Cfr13I	GGNCC	5 cut(s)	437, 875, 887, 899, 1010
CseI	GACGC	1 cut(s)	1086
CsiI	ACCWGGT	1 cut(s)	1087
Csp6I	GTAC	5 cut(s)	96, 274, 422, 554, 841
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	5 cut(s)	290, 300, 845, 921, 934
CviQI	GTAC	5 cut(s)	96, 274, 422, 554, 841
DdeI	CTNAG	2 cut(s)	825, 1024
DpnI	GATC	3 cut(s)	336, 714, 927
DpnII	GATC	3 cut(s)	334, 712, 925
EaeI	YGGCCR	2 cut(s)	943, 1144
Eco130I	CCWWGG	2 cut(s)	249, 844
Eco24I	GRGCYC	1 cut(s)	1046
Eco47I	GGWCC	4 cut(s)	437, 875, 887, 899
Eco57I	CTGAAG	1 cut(s)	903
Eco91I	GGTNACC	2 cut(s)	24, 117
EcoNI	CCTNNNNNAGG	2 cut(s)	432, 894
EcoO109I	RGGNCCY	3 cut(s)	437, 887, 899
EcoO65I	GGTNACC	2 cut(s)	24, 117
EcoRII	CCWGG	9 cut(s)	6, 195, 269, 892, 979, 1063, 1087, 1105, 1120
EcoT14I	CCWWGG	2 cut(s)	249, 844
EcoT22I	ATGCAT	1 cut(s)	1059
EcoT38I	GRGCYC	1 cut(s)	1046
ErhI	CCWWGG	2 cut(s)	249, 844
FaeI	CATG	5 cut(s)	293, 303, 848, 924, 937
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	5 cut(s)	289, 299, 844, 920, 933
FauNDI	CATATG	1 cut(s)	1080
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	8 cut(s)	186, 237, 627, 801, 810, 864, 867, 870
FokI	GGATG	2 cut(s)	266, 530
FriOI	GRGCYC	1 cut(s)	1046
Fsp4HI	GCNGC	8 cut(s)	186, 237, 627, 801, 810, 864, 867, 870
FspBI	CTAG	2 cut(s)	647, 768
GluI	GCNGC	8 cut(s)	186, 237, 627, 801, 810, 864, 867, 870
GsaI	CCCAGC	1 cut(s)	972
GsuI	CTGGAG	1 cut(s)	915
HaeIII	GGCC	3 cut(s)	945, 1011, 1146
HapII	CCGG	5 cut(s)	189, 878, 906, 1013, 1040
HgaI	GACGC	1 cut(s)	1086
Hin1II	CATG	5 cut(s)	293, 303, 848, 924, 937
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	2 cut(s)	205, 379
HpaII	CCGG	5 cut(s)	189, 878, 906, 1013, 1040
HphI	GGTGA	5 cut(s)	61, 111, 1041, 1092, 1122
Hpy166II	GTNNAC	3 cut(s)	160, 266, 841
Hpy188I	TCNGA	2 cut(s)	339, 987
Hpy188III	TCNNGA	5 cut(s)	284, 440, 574, 647, 1152
Hpy8I	GTNNAC	3 cut(s)	160, 266, 841
HpyAV	CCTTC	2 cut(s)	878, 1143
HpyCH4III	ACNGT	3 cut(s)	514, 532, 553
HpyCH4IV	ACGT	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	825, 1024
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	5 cut(s)	293, 303, 848, 924, 937
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	334, 712, 925
LmnI	GCTCC	2 cut(s)	808, 1075
Lsp1109I	GCAGC	7 cut(s)	172, 638, 812, 821, 850, 878, 881
LweI	GCATC	4 cut(s)	208, 239, 754, 1066
MabI	ACCWGGT	1 cut(s)	1087
MaeI	CTAG	2 cut(s)	647, 768
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	6 cut(s)	24, 117, 354, 508, 734, 1098
MalI	GATC	3 cut(s)	336, 714, 927
MboI	GATC	3 cut(s)	334, 712, 925
MboII	GAAGA	3 cut(s)	270, 463, 589
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	3 cut(s)	162, 1046, 1072
MluCI	AATT	3 cut(s)	83, 408, 561
Mph1103I	ATGCAT	1 cut(s)	1059
MroNI	GCCGGC	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	849
MspA1I	CMGCKG	1 cut(s)	872
MspI	CCGG	5 cut(s)	189, 878, 906, 1013, 1040
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	826
MvaI	CCWGG	9 cut(s)	8, 197, 271, 894, 981, 1065, 1089, 1107, 1122
NaeI	GCCGGC	1 cut(s)	190
NciI	CCSGG	3 cut(s)	906, 1013, 1041
NcoI	CCATGG	1 cut(s)	844
NdeI	CATATG	1 cut(s)	1080
NdeII	GATC	3 cut(s)	334, 712, 925
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	5 cut(s)	293, 303, 848, 924, 937
NlaIV	GGNNCC	1 cut(s)	927
NmuCI	GTSAC	5 cut(s)	117, 354, 508, 734, 1098
NsiI	ATGCAT	1 cut(s)	1059
NspI	RCATGY	2 cut(s)	293, 937
PctI	GAATGC	1 cut(s)	826
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	205, 379
PfoI	TCCNGGA	2 cut(s)	892, 904
PkrI	GCNGC	8 cut(s)	187, 238, 628, 802, 811, 865, 868, 871
PpuMI	RGGWCCY	3 cut(s)	437, 887, 899
Psp5II	RGGWCCY	3 cut(s)	437, 887, 899
Psp6I	CCWGG	9 cut(s)	6, 195, 269, 892, 979, 1063, 1087, 1105, 1120
PspEI	GGTNACC	2 cut(s)	24, 117
PspFI	CCCAGC	1 cut(s)	968
PspGI	CCWGG	9 cut(s)	6, 195, 269, 892, 979, 1063, 1087, 1105, 1120
PspN4I	GGNNCC	1 cut(s)	927
PspPI	GGNCC	5 cut(s)	437, 875, 887, 899, 1010
PspPPI	RGGWCCY	3 cut(s)	437, 887, 899
PstI	CTGCAG	4 cut(s)	433, 802, 811, 868
PstNI	CAGNNNCTG	2 cut(s)	806, 872
PsuI	RGATCY	1 cut(s)	925
PvuII	CAGCTG	1 cut(s)	872
RsaI	GTAC	5 cut(s)	97, 275, 423, 555, 842
RsaNI	GTAC	5 cut(s)	96, 274, 422, 554, 841
RseI	CAYNNNNRTG	1 cut(s)	849
SatI	GCNGC	8 cut(s)	186, 237, 627, 801, 810, 864, 867, 870
Sau3AI	GATC	3 cut(s)	334, 712, 925
Sau96I	GGNCC	5 cut(s)	437, 875, 887, 899, 1010
SduI	GDGCHC	3 cut(s)	162, 1046, 1072
SexAI	ACCWGGT	1 cut(s)	1087
SfaNI	GCATC	4 cut(s)	208, 239, 754, 1066
SfcI	CTRYAG	4 cut(s)	429, 798, 807, 864
SinI	GGWCC	4 cut(s)	437, 875, 887, 899
SmiMI	CAYNNNNRTG	1 cut(s)	849
Sse9I	AATT	3 cut(s)	83, 408, 561
SsiI	CCGC	4 cut(s)	236, 624, 779, 1076
SspMI	CTAG	2 cut(s)	647, 768
StyI	CCWWGG	2 cut(s)	249, 844
TaaI	ACNGT	3 cut(s)	514, 532, 553
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	3 cut(s)	32, 573, 1114
TasI	AATT	3 cut(s)	83, 408, 561
TatI	WGTACW	2 cut(s)	421, 553
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	205, 379
TscAI	CASTG	7 cut(s)	220, 232, 337, 409, 556, 662, 843
TseFI	GTSAC	5 cut(s)	117, 354, 508, 734, 1098
TseI	GCWGC	7 cut(s)	185, 626, 800, 809, 863, 866, 869
Tsp45I	GTSAC	5 cut(s)	117, 354, 508, 734, 1098
TspDTI	ATGAA	3 cut(s)	288, 677, 867
TspRI	CASTG	7 cut(s)	220, 232, 337, 409, 556, 662, 843
VneI	GTGCAC	1 cut(s)	158
VpaK11BI	GGWCC	4 cut(s)	437, 875, 887, 899
XagI	CCTNNNNNAGG	2 cut(s)	432, 894
XbaI	TCTAGA	1 cut(s)	646
XceI	RCATGY	2 cut(s)	293, 937
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	2 cut(s)	647, 768
Zsp2I	ATGCAT	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.