Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004917

Physical Location & Seq

Genomic Coordinates Forward (+)

75995897 .. 76000367

Gene Structure 4471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG581200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAACTATGACTTCCTTTGTTTTCAGGTGTTTTCTGCTTTTGGGTTTGTGCACAAGATTGCTACTTTCGAAAAGGCTGCAGGCTTCCAGGCATTGATTCAGTTCAGTGATGCTGACACTGCATCTGCGGCTAGGAATGCCTTGGATGGAAGAAGTATACCCAGGTACTTGCTTCCTGAGCATGTCGGTTCATGCCACTTGCGTATCTCGTATTCTGCACACACTGATCTGAACATCAAGTTCCAGTCACACAGAAGCAGGGATTATACAAATCCATACCTTCCTGTAAATCCTACTGCAATAGAGGGAGTTGTGCAGCCTGCAGTAGGTCCTGATGGAAAGAAGAAAGAGATGGAGAGTAATGTGCTTCTGGCTTCCATTGAAAATATGCAGTATGCTGTCACTGTGGATGTTCTTCACACGGTATTTTCAGCGTTTGGCACAGTACAAAAAATTGCTATATTCGAGAAGAATGGTCAAACACAGGCATTAGTTCAATACCCTGATATTGCTACCGCAGCTGTTGCCAGAGAAGCTCTAGAAGGGCACTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTACAGTGACAAAAGTAGAGATTATACAATCCCAGATGCTAGTTTGCTTGCGGTGCAATCTGGGTACCCTGCAGCTCCTGCAGCCTGGCAGAATGCGCAGGCTGCTCCAGTGTACCATGGAAATGAATACAGTGCTGCAGCAGCTGGACCGGGTCAAGGTCCTCCTGGACAAGTGCCATCATGGGATCCAAACATGCAAGCAGGCCGATCATCGTTTGTTTCGGTTCCTAGCACCTTTCCTGGTCAGACATTTCCTACATCATCAGGTGGTCCGGTATATTCCTCTGCACCAATGCCTGCGGGTTCATCACCTCCAATTACTTCAGGTGTGGATCCAAGGGGAATGCATCAGCCAGGTGCTCCACCGCATGTGCGACCAGGTGGTGCCTCACCCCCAGGCGTTCGACCTCCCGGTGCTTCACCTTCTTATTACGGCCAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

354

Amino Acids

37.63

Weight (kDa)

6.62

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_5	PF13893	107 - 204	2.9e-07	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_8	PF11835	120 - 198	2.3e-08	RRM-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01150 AT3G01150 AT3G01150 AT3G01150
fragaria_vesca	FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200
malus_domestica	MD00G1125500.v1.1 MD00G1167800.v1.1 MD09G1053000.v1.1
prunus_persica	Prupe.3G265700_v2.0.a1 Prupe.3G265700_v2.0.a1
pyrus_communis	pycom111g04420 pycom17g04840
rosa_chinensis	RchiOBHm_Chr2g0167691
rosa_laevigata	RLG00000021746
rosa_multiflora	Rmu_sc0001970.1_g000017 Rmu_sc0002143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083330
rosa_rugosa	Rorug02G0531300 Rorug02G0531400
rosa_samantha	Rh2AG600300 Rh2BG610800 Rh2CG581200 Rh2DG623500
rosa_wichuraiana	Rw2G049830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	717
Acc65I	GGTACC	1 cut(s)	684
AccB1I	GGYRCC	2 cut(s)	684, 1004
AccI	GTMKAC	1 cut(s)	157
AciI	CCGC	5 cut(s)	128, 516, 671, 920, 986
AclWI	GGATC	4 cut(s)	800, 813, 947, 960
AcoI	YGGCCR	1 cut(s)	1054
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	4 cut(s)	167, 447, 686, 734
AfiI	CCNNNNNNNGG	2 cut(s)	326, 776
AgsI	TTSAA	2 cut(s)	383, 497
AjnI	CCWGG	8 cut(s)	87, 161, 704, 784, 859, 973, 997, 1015
AluBI	AGCT	5 cut(s)	521, 536, 577, 695, 764
AluI	AGCT	5 cut(s)	521, 536, 577, 695, 764
Alw21I	GWGCWC	2 cut(s)	54, 982
Alw44I	GTGCAC	1 cut(s)	50
AlwI	GGATC	4 cut(s)	800, 813, 947, 960
AlwNI	CAGNNNCTG	2 cut(s)	698, 764
AoxI	GGCC	2 cut(s)	823, 1054
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	9 cut(s)	77, 316, 518, 692, 701, 722, 755, 758, 761
Asp718I	GGTACC	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	718
AspS9I	GGNCC	4 cut(s)	329, 767, 779, 890
AsuC2I	CCSGG	2 cut(s)	771, 1032
AsuHPI	GGTGA	3 cut(s)	921, 1002, 1032
AsuII	TTCGAA	1 cut(s)	69
AvaII	GGWCC	4 cut(s)	329, 767, 779, 890
BaeGI	GKGCMC	2 cut(s)	54, 549
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BamHI	GGATCC	2 cut(s)	805, 952
BanI	GGYRCC	2 cut(s)	684, 1004
Bbv12I	GWGCWC	2 cut(s)	54, 982
BbvI	GCAGC	9 cut(s)	64, 328, 530, 704, 709, 713, 742, 770, 773
BccI	CCATC	5 cut(s)	140, 329, 346, 554, 805
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	8 cut(s)	89, 163, 706, 786, 861, 975, 999, 1017
BcnI	CCSGG	2 cut(s)	771, 1032
BfaI	CTAG	4 cut(s)	132, 539, 660, 849
BfmI	CTRYAG	5 cut(s)	78, 321, 690, 699, 756
Bme18I	GGWCC	4 cut(s)	329, 767, 779, 890
BmgT120I	GGNCC	4 cut(s)	329, 767, 779, 890
BmiI	GGNNCC	5 cut(s)	686, 807, 846, 954, 1006
BmsI	GCATC	4 cut(s)	100, 131, 646, 976
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	771, 1032
BsaJI	CCNNGG	5 cut(s)	141, 161, 736, 956, 1015
BsaWI	WCCGGW	1 cut(s)	892
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 776
Bse1I	ACTGG	2 cut(s)	244, 728
BseBI	CCWGG	8 cut(s)	89, 163, 706, 786, 861, 975, 999, 1017
BseDI	CCNNGG	5 cut(s)	141, 161, 736, 956, 1015
BseGI	GGATG	2 cut(s)	151, 415
BseLI	CCNNNNNNNGG	2 cut(s)	326, 776
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	244, 728
BseSI	GKGCMC	2 cut(s)	54, 549
BseXI	GCAGC	9 cut(s)	64, 328, 530, 704, 709, 713, 742, 770, 773
BsgI	GTGCAG	3 cut(s)	201, 335, 891
BshFI	GGCC	2 cut(s)	825, 1056
BshNI	GGYRCC	2 cut(s)	684, 1004
BsiHKAI	GWGCWC	2 cut(s)	54, 982
BsiSI	CCGG	3 cut(s)	770, 893, 1032
BslI	CCNNNNNNNGG	2 cut(s)	326, 776
BsmI	GAATGC	3 cut(s)	142, 718, 969
BsnI	GGCC	2 cut(s)	825, 1056
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	3 cut(s)	54, 549, 982
Bsp143I	GATC	5 cut(s)	226, 604, 805, 827, 952
Bsp19I	CCATGG	1 cut(s)	736
BspACI	CCGC	5 cut(s)	128, 516, 671, 920, 986
BspANI	GGCC	2 cut(s)	825, 1056
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	5 cut(s)	686, 807, 846, 954, 1006
BspMAI	CTGCAG	5 cut(s)	82, 325, 694, 703, 760
BspPI	GGATC	4 cut(s)	800, 813, 947, 960
BspT104I	TTCGAA	1 cut(s)	69
BspT107I	GGYRCC	2 cut(s)	684, 1004
BsrI	ACTGG	2 cut(s)	244, 728
BssECI	CCNNGG	5 cut(s)	141, 161, 736, 956, 1015
BssMI	GATC	5 cut(s)	226, 604, 805, 827, 952
BssNAI	GTATAC	1 cut(s)	158
BssT1I	CCWWGG	3 cut(s)	141, 736, 956
Bst1107I	GTATAC	1 cut(s)	158
Bst2UI	CCWGG	8 cut(s)	89, 163, 706, 786, 861, 975, 999, 1017
Bst4CI	ACNGT	5 cut(s)	406, 424, 445, 626, 752
BstAPI	GCANNNNNTGC	2 cut(s)	524, 698
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	7 cut(s)	82, 321, 669, 720, 819, 823, 918
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	736
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	151, 415
BstHHI	GCGC	1 cut(s)	718
BstKTI	GATC	5 cut(s)	229, 607, 808, 830, 955
BstMBI	GATC	5 cut(s)	226, 604, 805, 827, 952
BstNI	CCWGG	8 cut(s)	89, 163, 706, 786, 861, 975, 999, 1017
BstNSI	RCATGY	3 cut(s)	185, 817, 992
BstSFI	CTRYAG	5 cut(s)	78, 321, 690, 699, 756
BstSLI	GKGCMC	2 cut(s)	54, 549
BstV1I	GCAGC	9 cut(s)	64, 328, 530, 704, 709, 713, 742, 770, 773
BstX2I	RGATCY	2 cut(s)	805, 952
BstYI	RGATCY	2 cut(s)	805, 952
BstZ17I	GTATAC	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	825, 1056
BtgI	CCRYGG	1 cut(s)	736
BtsCI	GGATG	2 cut(s)	151, 415
BtsI	GCAGTG	2 cut(s)	117, 547
BtsIMutI	CAGTG	8 cut(s)	112, 117, 222, 402, 547, 631, 735, 757
Cac8I	GCNNGC	7 cut(s)	82, 321, 669, 720, 819, 823, 918
CaiI	CAGNNNCTG	2 cut(s)	698, 764
CfoI	GCGC	1 cut(s)	718
Cfr13I	GGNCC	4 cut(s)	329, 767, 779, 890
CsiI	ACCWGGT	1 cut(s)	997
Csp6I	GTAC	4 cut(s)	166, 446, 685, 733
CviAII	CATG	6 cut(s)	182, 192, 737, 801, 814, 989
CviQI	GTAC	4 cut(s)	166, 446, 685, 733
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	5 cut(s)	228, 606, 807, 829, 954
DpnII	GATC	5 cut(s)	226, 604, 805, 827, 952
EaeI	YGGCCR	1 cut(s)	1054
Eco130I	CCWWGG	3 cut(s)	141, 736, 956
Eco47I	GGWCC	4 cut(s)	329, 767, 779, 890
Eco57I	CTGAAG	1 cut(s)	927
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoO109I	RGGNCCY	2 cut(s)	329, 779
EcoRII	CCWGG	8 cut(s)	87, 161, 704, 784, 859, 973, 997, 1015
EcoT14I	CCWWGG	3 cut(s)	141, 736, 956
EcoT22I	ATGCAT	1 cut(s)	969
ErhI	CCWWGG	3 cut(s)	141, 736, 956
FaeI	CATG	6 cut(s)	185, 195, 740, 804, 817, 992
FatI	CATG	6 cut(s)	181, 191, 736, 800, 813, 988
FauI	CCCGC	1 cut(s)	913
FblI	GTMKAC	1 cut(s)	157
FokI	GGATG	2 cut(s)	158, 422
FspBI	CTAG	4 cut(s)	132, 539, 660, 849
FspI	TGCGCA	1 cut(s)	717
GlaI	GCGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	2 cut(s)	825, 1056
HapII	CCGG	3 cut(s)	770, 893, 1032
HhaI	GCGC	1 cut(s)	718
Hin1II	CATG	6 cut(s)	185, 195, 740, 804, 817, 992
Hin6I	GCGC	1 cut(s)	716
HinP1I	GCGC	1 cut(s)	716
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	3 cut(s)	770, 893, 1032
HphI	GGTGA	3 cut(s)	921, 1002, 1032
Hpy166II	GTNNAC	3 cut(s)	52, 158, 733
Hpy188I	TCNGA	2 cut(s)	231, 867
Hpy188III	TCNNGA	4 cut(s)	176, 332, 466, 539
Hpy8I	GTNNAC	3 cut(s)	52, 158, 733
HpyAV	CCTTC	3 cut(s)	290, 536, 1053
HpyCH4III	ACNGT	5 cut(s)	406, 424, 445, 626, 752
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	6 cut(s)	185, 195, 740, 804, 817, 992
HspAI	GCGC	1 cut(s)	716
KpnI	GGTACC	1 cut(s)	688
Kzo9I	GATC	5 cut(s)	226, 604, 805, 827, 952
LmnI	GCTCC	3 cut(s)	700, 730, 985
Lsp1109I	GCAGC	9 cut(s)	64, 328, 530, 704, 709, 713, 742, 770, 773
LweI	GCATC	4 cut(s)	100, 131, 646, 976
MabI	ACCWGGT	1 cut(s)	997
MaeI	CTAG	4 cut(s)	132, 539, 660, 849
MaeIII	GTNAC	3 cut(s)	246, 400, 626
MalI	GATC	5 cut(s)	228, 606, 807, 829, 954
MboI	GATC	5 cut(s)	226, 604, 805, 827, 952
MboII	GAAGA	4 cut(s)	162, 355, 407, 481
MflI	RGATCY	2 cut(s)	805, 952
MhlI	GDGCHC	3 cut(s)	54, 549, 982
MluCI	AATT	2 cut(s)	453, 936
MnlI	CCTC	6 cut(s)	298, 792, 913, 942, 1018, 1038
Mph1103I	ATGCAT	1 cut(s)	969
MslI	CAYNNNNRTG	1 cut(s)	741
MspA1I	CMGCKG	2 cut(s)	521, 764
MspI	CCGG	3 cut(s)	770, 893, 1032
Mva1269I	GAATGC	3 cut(s)	142, 718, 969
MvaI	CCWGG	8 cut(s)	89, 163, 706, 786, 861, 975, 999, 1017
NciI	CCSGG	2 cut(s)	771, 1032
NcoI	CCATGG	1 cut(s)	736
NdeII	GATC	5 cut(s)	226, 604, 805, 827, 952
NlaIII	CATG	6 cut(s)	185, 195, 740, 804, 817, 992
NlaIV	GGNNCC	5 cut(s)	686, 807, 846, 954, 1006
NmuCI	GTSAC	3 cut(s)	246, 400, 626
NsbI	TGCGCA	1 cut(s)	717
NsiI	ATGCAT	1 cut(s)	969
NspI	RCATGY	3 cut(s)	185, 817, 992
NspV	TTCGAA	1 cut(s)	69
PctI	GAATGC	3 cut(s)	142, 718, 969
PfeI	GAWTC	1 cut(s)	97
PflFI	GACNNNGTC	1 cut(s)	771
PfoI	TCCNGGA	1 cut(s)	784
PpuMI	RGGWCCY	2 cut(s)	329, 779
Psp5II	RGGWCCY	2 cut(s)	329, 779
Psp6I	CCWGG	8 cut(s)	87, 161, 704, 784, 859, 973, 997, 1015
PspGI	CCWGG	8 cut(s)	87, 161, 704, 784, 859, 973, 997, 1015
PspN4I	GGNNCC	5 cut(s)	686, 807, 846, 954, 1006
PspPI	GGNCC	4 cut(s)	329, 767, 779, 890
PspPPI	RGGWCCY	2 cut(s)	329, 779
PstI	CTGCAG	5 cut(s)	82, 325, 694, 703, 760
PstNI	CAGNNNCTG	2 cut(s)	698, 764
PsuI	RGATCY	2 cut(s)	805, 952
PsyI	GACNNNGTC	1 cut(s)	771
PvuII	CAGCTG	2 cut(s)	521, 764
RsaI	GTAC	4 cut(s)	167, 447, 686, 734
RsaNI	GTAC	4 cut(s)	166, 446, 685, 733
RseI	CAYNNNNRTG	1 cut(s)	741
Sau3AI	GATC	5 cut(s)	226, 604, 805, 827, 952
Sau96I	GGNCC	4 cut(s)	329, 767, 779, 890
SduI	GDGCHC	3 cut(s)	54, 549, 982
SexAI	ACCWGGT	1 cut(s)	997
SfaNI	GCATC	4 cut(s)	100, 131, 646, 976
SfcI	CTRYAG	5 cut(s)	78, 321, 690, 699, 756
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	4 cut(s)	329, 767, 779, 890
SmiMI	CAYNNNNRTG	1 cut(s)	741
Sse9I	AATT	2 cut(s)	453, 936
SsiI	CCGC	5 cut(s)	128, 516, 671, 920, 986
SspMI	CTAG	4 cut(s)	132, 539, 660, 849
StyI	CCWWGG	3 cut(s)	141, 736, 956
TaaI	ACNGT	5 cut(s)	406, 424, 445, 626, 752
TaqI	TCGA	3 cut(s)	69, 465, 1024
TasI	AATT	2 cut(s)	453, 936
TatI	WGTACW	1 cut(s)	445
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	97
TscAI	CASTG	8 cut(s)	112, 124, 229, 409, 554, 631, 735, 757
TseFI	GTSAC	3 cut(s)	246, 400, 626
TseI	GCWGC	9 cut(s)	77, 316, 518, 692, 701, 722, 755, 758, 761
Tsp45I	GTSAC	3 cut(s)	246, 400, 626
TspDTI	ATGAA	5 cut(s)	17, 180, 569, 759, 915
TspRI	CASTG	8 cut(s)	112, 124, 229, 409, 554, 631, 735, 757
Tth111I	GACNNNGTC	1 cut(s)	771
VneI	GTGCAC	1 cut(s)	50
VpaK11BI	GGWCC	4 cut(s)	329, 767, 779, 890
XagI	CCTNNNNNAGG	1 cut(s)	324
XbaI	TCTAGA	1 cut(s)	538
XceI	RCATGY	3 cut(s)	185, 817, 992
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	4 cut(s)	132, 539, 660, 849
Zsp2I	ATGCAT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.