Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004917

Physical Location & Seq

Genomic Coordinates Forward (+)

77434414 .. 77439576

Gene Structure 5163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTCGACCTCGGGGACACCGCAGTTCAGGTACACGCAGACGCCGTCGAAGGTGCTCCACCTCCGCAATCTCCCCTGGGAGTGCGCCGAGGAGGAGCTCATCGAGCTCTGCAAGCATTTTGGGAAGATCGTCAATACCAAGTGCAACGTCGGCGCCAATCGCAACCAGGCCTTCGTCGAATTCGCAGACCTAAACCAGGCCATAAACATGGTTTCATATTATGCTTCATCGTCAGAGCCTGCTCAGGTCCGGGGTAAAACAGTTTACATCCAGTATTCAAATAGACACGAAATTGTGAACAACAAAAGCCCTGGAGATGTTCCTGGGAATGTGTTGCTGGTAACCATCGAGGGTGTTGAAGCTGGTGATGTGAGCATTGATGTCATTCACTTGGTGTTTTCTGCTTTTGGGTTTGTGCACAAGATTGCTACTTTCGAAAAGGCTGCAGGCTTCCAGGCATTGATTCAGTTCAGTGATGCTGACACTGCATCTGCGGCTAGGAATGCCTTGGATGGAAGAAGTATACCCAGGTACTTGCTTCCTGAGCATGTCGGTTCATGCCACTTGCGTATCTCGTATTCTGCACACACTGATCTGAACATCAAATTCCAGTCACACAGAAGCAGGGATTATACAAATCCATACCTTCCTGTAAATCCTACTGCAATAGAGGGAGTTGTGCAGCCTGCAGTAGGTCCTGATGGAAAGAAGAAAGAGATGGAGAGTAATGTGCTTCTGGCTTCCATTGAAAATATGCAGTATGCTGTCACTGTGGATGTTCTTCACACGGTATTTTCAGCGTTTGGCACAGTACAAAAAATTGCTATATTCGAGAAGAATGGTCAAACACAGGCATTAGTTCAATACCCTGATATTGCTACCGCAGCTGTTGCCAGAGAAGCTCTAGAGGGGCACTGCATATATGATGGTGGCTATTCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

314

Amino Acids

34.47

Weight (kDa)

5.99

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	21 - 70	4.7e-08	RNA recognition motif
RRM_8	PF11835	242 - 312	1.8e-07	RRM-like domain
RRM_1	PF00076	249 - 308	1e-05	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01150 AT3G01150 AT3G01150 AT3G01150
fragaria_vesca	FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200
malus_domestica	MD00G1125500.v1.1 MD00G1167800.v1.1 MD09G1053000.v1.1
prunus_persica	Prupe.3G265700_v2.0.a1 Prupe.3G265700_v2.0.a1
pyrus_communis	pycom111g04420 pycom17g04840
rosa_chinensis	RchiOBHm_Chr2g0167691
rosa_laevigata	RLG00000021746
rosa_multiflora	Rmu_sc0001970.1_g000017 Rmu_sc0002143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083330
rosa_rugosa	Rorug02G0531300 Rorug02G0531400
rosa_samantha	Rh2AG600300 Rh2BG610800 Rh2CG581200 Rh2DG623500
rosa_wichuraiana	Rw2G049830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	2 cut(s)	5, 523
AciI	CCGC	4 cut(s)	20, 64, 494, 882
AcsI	RAATTY	2 cut(s)	179, 605
AcyI	GRCGYC	2 cut(s)	41, 153
AdeI	CACNNNGTG	1 cut(s)	394
AfaI	GTAC	3 cut(s)	32, 533, 813
AfiI	CCNNNNNNNGG	2 cut(s)	196, 692
AgsI	TTSAA	4 cut(s)	279, 359, 749, 863
AjnI	CCWGG	7 cut(s)	74, 165, 195, 310, 322, 453, 527
AluBI	AGCT	5 cut(s)	97, 106, 362, 887, 902
AluI	AGCT	5 cut(s)	97, 106, 362, 887, 902
Alw21I	GWGCWC	4 cut(s)	57, 99, 108, 420
Alw44I	GTGCAC	1 cut(s)	416
AlwNI	CAGNNNCTG	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	2 cut(s)	168, 198
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	3 cut(s)	443, 682, 884
ApoI	RAATTY	2 cut(s)	179, 605
AspLEI	GCGC	2 cut(s)	86, 155
AspS9I	GGNCC	2 cut(s)	247, 695
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	377
AsuII	TTCGAA	1 cut(s)	435
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	2 cut(s)	247, 695
BaeGI	GKGCMC	2 cut(s)	420, 915
BaeI	ACNNNNGTAYC	2 cut(s)	553, 586
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	99, 108
Bbv12I	GWGCWC	4 cut(s)	57, 99, 108, 420
BbvI	GCAGC	3 cut(s)	430, 694, 896
BccI	CCATC	5 cut(s)	353, 506, 695, 712, 920
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	7 cut(s)	76, 167, 197, 312, 324, 455, 529
BcnI	CCSGG	1 cut(s)	251
BfaI	CTAG	2 cut(s)	498, 905
BfmI	CTRYAG	2 cut(s)	444, 687
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	4 cut(s)	444, 495, 683, 885
BlsI	GCNGC	4 cut(s)	445, 496, 684, 886
Bme1390I	CCNGG	8 cut(s)	76, 167, 197, 251, 312, 324, 455, 529
Bme18I	GGWCC	2 cut(s)	247, 695
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	247, 695
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	8 cut(s)	76, 167, 197, 251, 312, 324, 455, 529
BmsI	GCATC	2 cut(s)	466, 497
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	2 cut(s)	243, 543
Bpu14I	TTCGAA	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	251
BsaHI	GRCGYC	2 cut(s)	41, 153
BsaJI	CCNNGG	9 cut(s)	9, 74, 75, 87, 250, 310, 323, 507, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 692
Bse1I	ACTGG	2 cut(s)	271, 610
BseBI	CCWGG	7 cut(s)	76, 167, 197, 312, 324, 455, 529
BseDI	CCNNGG	9 cut(s)	9, 74, 75, 87, 250, 310, 323, 507, 527
BseGI	GGATG	3 cut(s)	267, 517, 781
BseLI	CCNNNNNNNGG	2 cut(s)	196, 692
BseMII	CTCAG	2 cut(s)	257, 534
BseNI	ACTGG	2 cut(s)	271, 610
BseRI	GAGGAG	2 cut(s)	104, 107
BseSI	GKGCMC	2 cut(s)	420, 915
BseXI	GCAGC	3 cut(s)	430, 694, 896
BsgI	GTGCAG	2 cut(s)	567, 701
BshFI	GGCC	2 cut(s)	170, 200
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	4 cut(s)	57, 99, 108, 420
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	196, 692
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	170, 200
BsoBI	CYCGRG	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	5 cut(s)	57, 99, 108, 420, 915
Bsp143I	GATC	2 cut(s)	126, 592
BspACI	CCGC	4 cut(s)	20, 64, 494, 882
BspANI	GGCC	2 cut(s)	170, 200
BspCNI	CTCAG	2 cut(s)	256, 535
BspLI	GGNNCC	1 cut(s)	154
BspMAI	CTGCAG	2 cut(s)	448, 691
BspT104I	TTCGAA	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	271, 610
BssECI	CCNNGG	9 cut(s)	9, 74, 75, 87, 250, 310, 323, 507, 527
BssMI	GATC	2 cut(s)	126, 592
BssNAI	GTATAC	1 cut(s)	524
BssNI	GRCGYC	2 cut(s)	41, 153
BssT1I	CCWWGG	1 cut(s)	507
Bst1107I	GTATAC	1 cut(s)	524
Bst2UI	CCWGG	7 cut(s)	76, 167, 197, 312, 324, 455, 529
Bst4CI	ACNGT	4 cut(s)	262, 772, 790, 811
BstACI	GRCGYC	2 cut(s)	41, 153
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	4 cut(s)	113, 240, 448, 687
BstDEI	CTNAG	2 cut(s)	243, 543
BstEII	GGTNACC	1 cut(s)	340
BstENI	CCTNNNNNAGG	2 cut(s)	194, 690
BstF5I	GGATG	3 cut(s)	267, 517, 781
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	86, 155
BstKTI	GATC	2 cut(s)	129, 595
BstMBI	GATC	2 cut(s)	126, 592
BstNI	CCWGG	7 cut(s)	76, 167, 197, 312, 324, 455, 529
BstNSI	RCATGY	1 cut(s)	551
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	8 cut(s)	74, 165, 195, 249, 310, 322, 453, 527
BstSFI	CTRYAG	2 cut(s)	444, 687
BstSLI	GKGCMC	2 cut(s)	420, 915
BstV1I	GCAGC	3 cut(s)	430, 694, 896
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstZ17I	GTATAC	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	170, 200
BtsCI	GGATG	3 cut(s)	267, 517, 781
BtsI	GCAGTG	2 cut(s)	483, 913
BtsIMutI	CAGTG	5 cut(s)	478, 483, 588, 768, 913
Cac8I	GCNNGC	4 cut(s)	113, 240, 448, 687
CaiI	CAGNNNCTG	1 cut(s)	239
CfoI	GCGC	2 cut(s)	86, 155
Cfr13I	GGNCC	2 cut(s)	247, 695
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	3 cut(s)	31, 532, 812
CviAII	CATG	3 cut(s)	208, 548, 558
CviQI	GTAC	3 cut(s)	31, 532, 812
DdeI	CTNAG	2 cut(s)	243, 543
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	2 cut(s)	128, 594
DpnII	GATC	2 cut(s)	126, 592
DraIII	CACNNNGTG	1 cut(s)	394
Ecl136II	GAGCTC	2 cut(s)	97, 106
Eco130I	CCWWGG	1 cut(s)	507
Eco147I	AGGCCT	1 cut(s)	170
Eco24I	GRGCYC	2 cut(s)	99, 108
Eco47I	GGWCC	2 cut(s)	247, 695
Eco53kI	GAGCTC	2 cut(s)	97, 106
Eco88I	CYCGRG	1 cut(s)	10
Eco91I	GGTNACC	1 cut(s)	340
EcoICRI	GAGCTC	2 cut(s)	97, 106
EcoNI	CCTNNNNNAGG	2 cut(s)	194, 690
EcoO109I	RGGNCCY	1 cut(s)	695
EcoO65I	GGTNACC	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	7 cut(s)	74, 165, 195, 310, 322, 453, 527
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	2 cut(s)	99, 108
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	3 cut(s)	211, 551, 561
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	3 cut(s)	207, 547, 557
FblI	GTMKAC	2 cut(s)	5, 523
Fnu4HI	GCNGC	4 cut(s)	444, 495, 683, 885
FokI	GGATG	3 cut(s)	254, 524, 788
FriOI	GRGCYC	2 cut(s)	99, 108
Fsp4HI	GCNGC	4 cut(s)	444, 495, 683, 885
FspBI	CTAG	2 cut(s)	498, 905
GlaI	GCGC	2 cut(s)	85, 154
GluI	GCNGC	4 cut(s)	444, 495, 683, 885
GsuI	CTGGAG	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	170, 200
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	86, 155
Hin1I	GRCGYC	2 cut(s)	41, 153
Hin1II	CATG	3 cut(s)	211, 551, 561
Hin6I	GCGC	2 cut(s)	84, 153
HinP1I	GCGC	2 cut(s)	84, 153
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	6 cut(s)	6, 33, 265, 298, 418, 524
Hpy188I	TCNGA	2 cut(s)	235, 597
Hpy188III	TCNNGA	4 cut(s)	542, 698, 832, 905
Hpy8I	GTNNAC	6 cut(s)	6, 33, 265, 298, 418, 524
Hpy99I	CGWCG	3 cut(s)	49, 152, 179
HpyAV	CCTTC	3 cut(s)	43, 181, 656
HpyCH4III	ACNGT	4 cut(s)	262, 772, 790, 811
HpyCH4IV	ACGT	1 cut(s)	147
HpyF3I	CTNAG	2 cut(s)	243, 543
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	41, 153
Hsp92II	CATG	3 cut(s)	211, 551, 561
HspAI	GCGC	2 cut(s)	84, 153
KasI	GGCGCC	1 cut(s)	152
Kzo9I	GATC	2 cut(s)	126, 592
LmnI	GCTCC	2 cut(s)	60, 94
Lsp1109I	GCAGC	3 cut(s)	430, 694, 896
LweI	GCATC	2 cut(s)	466, 497
MaeI	CTAG	2 cut(s)	498, 905
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	340, 612, 766
MalI	GATC	2 cut(s)	128, 594
MboI	GATC	2 cut(s)	126, 592
MboII	GAAGA	5 cut(s)	136, 528, 721, 773, 847
MhlI	GDGCHC	5 cut(s)	57, 99, 108, 420, 915
MluCI	AATT	4 cut(s)	179, 291, 605, 819
Mly113I	GGCGCC	1 cut(s)	153
MnlI	CCTC	7 cut(s)	19, 71, 82, 85, 343, 664, 901
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	887
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	8 cut(s)	76, 167, 197, 251, 312, 324, 455, 529
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	7 cut(s)	76, 167, 197, 312, 324, 455, 529
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	2 cut(s)	126, 592
NlaIII	CATG	3 cut(s)	211, 551, 561
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	612, 766
NspI	RCATGY	1 cut(s)	551
NspV	TTCGAA	1 cut(s)	435
PasI	CCCWGGG	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	463
PflFI	GACNNNGTC	1 cut(s)	43
PkrI	GCNGC	4 cut(s)	445, 496, 684, 886
PluTI	GGCGCC	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	695
Psp124BI	GAGCTC	2 cut(s)	99, 108
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	7 cut(s)	74, 165, 195, 310, 322, 453, 527
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	7 cut(s)	74, 165, 195, 310, 322, 453, 527
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	247, 695
PspPPI	RGGWCCY	1 cut(s)	695
PstI	CTGCAG	2 cut(s)	448, 691
PstNI	CAGNNNCTG	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	3 cut(s)	32, 533, 813
RsaNI	GTAC	3 cut(s)	31, 532, 812
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	2 cut(s)	99, 108
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	4 cut(s)	444, 495, 683, 885
Sau3AI	GATC	2 cut(s)	126, 592
Sau96I	GGNCC	2 cut(s)	247, 695
ScrFI	CCNGG	8 cut(s)	76, 167, 197, 251, 312, 324, 455, 529
SduI	GDGCHC	5 cut(s)	57, 99, 108, 420, 915
SfaNI	GCATC	2 cut(s)	466, 497
SfcI	CTRYAG	2 cut(s)	444, 687
SfoI	GGCGCC	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	2 cut(s)	247, 695
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	179, 291, 605, 819
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	4 cut(s)	20, 64, 494, 882
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	2 cut(s)	498, 905
SstI	GAGCTC	2 cut(s)	99, 108
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	8 cut(s)	74, 165, 195, 249, 310, 322, 453, 527
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	4 cut(s)	262, 772, 790, 811
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	7 cut(s)	5, 47, 102, 177, 348, 435, 831
TasI	AATT	4 cut(s)	179, 291, 605, 819
TatI	WGTACW	1 cut(s)	811
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	463
TscAI	CASTG	5 cut(s)	478, 490, 595, 775, 920
TseFI	GTSAC	2 cut(s)	612, 766
TseI	GCWGC	3 cut(s)	443, 682, 884
Tsp45I	GTSAC	2 cut(s)	612, 766
TspDTI	ATGAA	4 cut(s)	204, 216, 546, 927
TspRI	CASTG	5 cut(s)	478, 490, 595, 775, 920
Tth111I	GACNNNGTC	1 cut(s)	43
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	247, 695
XagI	CCTNNNNNAGG	2 cut(s)	194, 690
XapI	RAATTY	2 cut(s)	179, 605
XbaI	TCTAGA	1 cut(s)	904
XceI	RCATGY	1 cut(s)	551
XmiI	GTMKAC	2 cut(s)	5, 523
XspI	CTAG	2 cut(s)	498, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.