Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004917

Physical Location & Seq

Genomic Coordinates Reverse (-)

26727495 .. 26731944

Gene Structure 4450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1125500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGTCGACATCGGGGACGCCGCAGTTCCGGTACACGCAGACGCCGTCGAAGGTGCTCCACCTCCGTAACCTCCCGTGGGAGTGCGCCGAGGAGGAGCTGATCGAGCTCTGCAAACCTTTCGGCAAGATCGTCAACACCAAGTGTAATGTCGGCGCCAATCGCAATCAGGCCTTCGTCGAATTCTCGGACCTAAACCAGGCCATCAATATGGTTTCGTATTATGCTTCATCCTCGGAGCCTGCGCAGGTCCGTGGTAAAACCGTGTACATTCAGTATTCAAATAGACACGAAATTGTTAACAACAAAAGTCCGGGAGATGTGCCCGGAAATGTCTTGTTGGTAACCATTGAGGGTGTTGAAGCTGGCGATGTGAGCATTGATGTTATTCACTTGGTGTTCTCTGCTTTCGGCTTTGTGCACAAGATTGCTACTTTTGAAAAAGCAGCAGGCTTCCAGGCATTGATTCAGTTCAGTGATGCTGTCACCGCATCTATGGCAAGGAATGCATTGGATGGAAGAAGTATACCCAGGTACTTGCTTCCAGAGAACGTCGGTTCATGCAACTTACGTATTTCATATTCCGCACACACCGATCTGAACATCAAGTTCCAGTCTCACCGAAGCAGGGACTATACAAATCCGCTCCTTCCTGTAAATCCTACTGCAATAGAGGGAATTATGCAGCCTACTGTAGGTCCTGATGGAAAGAGGAAAGAGCTGGAGAGTAACGTGCTTCTTGCTTCAATTGAAAATATGCAGTATGCTGTCACTGTGGATGTTATTCACACGGTGTTCTCTGCGTTTGGCACTGTCCAAAAAATTGCTATATTTGAGAAGAATGGCCAAACACAAGCATTAGTTCAATACCCTGATCTCAATACCGCAGCAGTTGCCAGAGAAGCTCTAGAGGGACACTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCGTATAGCGACAAAAGTAGGGACTACACTATCCCAGATGCTAGTTTGCTTGCGGCCCAACAAGTTTCTGGTTACCCTCCTCCAGGAGCTTGGCAGAATCCTCAGGCTGCTCCGATGTACCATGGCAATGAGTACAGTGGTGCAGCTTCTGTGCAGGCCCAAGCTCCTCCAGGTCCTCCAGGACAATCCCCATCATGGGATCCAGCCATGCAGGCAGGCATATCCACCTTTGGTTCGGCTCCTAGTACCTTTCCTGGTCAACCATACCAAGCATCGTCTGGTCCTGTATATGCCTCTGCAGCAATGCCAGTGGGTTCTTCGCCTCTCCAATCAGGCCCAACTTCTTCGGGTATGGGTTCCTGGGGAATGTCTCAGCCAGGCGTTCCACCCAATGTGCGACCTGGTGGTGGTGCTTCATCTCCCGGGGTTCGGCCTCCTGGTGCCTCACCATCCTACTACGGCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

484

Amino Acids

51.67

Weight (kDa)

6.26

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	21 - 70	1.3e-07	RNA recognition motif
RRM_5	PF13893	230 - 326	4.1e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_8	PF11835	242 - 320	1.8e-07	RRM-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01150 AT3G01150 AT3G01150 AT3G01150
fragaria_vesca	FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200
malus_domestica	MD00G1125500.v1.1 MD00G1167800.v1.1 MD09G1053000.v1.1
prunus_persica	Prupe.3G265700_v2.0.a1 Prupe.3G265700_v2.0.a1
pyrus_communis	pycom111g04420 pycom17g04840
rosa_chinensis	RchiOBHm_Chr2g0167691
rosa_laevigata	RLG00000021746
rosa_multiflora	Rmu_sc0001970.1_g000017 Rmu_sc0002143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083330
rosa_rugosa	Rorug02G0531300 Rorug02G0531400
rosa_samantha	Rh2AG600300 Rh2BG610800 Rh2CG581200 Rh2DG623500
rosa_wichuraiana	Rw2G049830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	2 cut(s)	152, 1424
AccBSI	CCGCTC	1 cut(s)	643
AccI	GTMKAC	2 cut(s)	5, 523
AciI	CCGC	6 cut(s)	20, 486, 582, 641, 882, 1037
AclWI	GGATC	2 cut(s)	1178, 1191
AcoI	YGGCCR	2 cut(s)	841, 1444
AcsI	RAATTY	1 cut(s)	179
AcyI	GRCGYC	3 cut(s)	17, 41, 153
AdeI	CACNNNGTG	3 cut(s)	141, 394, 790
AfaI	GTAC	6 cut(s)	32, 266, 533, 1103, 1118, 1231
AfiI	CCNNNNNNNGG	9 cut(s)	76, 196, 625, 692, 1067, 1179, 1180, 1391, 1413
AgsI	TTSAA	6 cut(s)	279, 359, 437, 744, 749, 863
AluBI	AGCT	9 cut(s)	97, 106, 362, 718, 902, 943, 1073, 1130, 1148
AluI	AGCT	9 cut(s)	97, 106, 362, 718, 902, 943, 1073, 1130, 1148
Alw21I	GWGCWC	3 cut(s)	57, 108, 420
Alw26I	GTCTC	2 cut(s)	618, 1359
Alw44I	GTGCAC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	1178, 1191
AlwNI	CAGNNNCTG	1 cut(s)	1133
Ama87I	CYCGRG	1 cut(s)	1406
AoxI	GGCC	8 cut(s)	168, 198, 841, 1038, 1140, 1318, 1415, 1444
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	6 cut(s)	443, 682, 884, 1091, 1127, 1283
ApoI	RAATTY	1 cut(s)	179
AspLEI	GCGC	3 cut(s)	86, 155, 244
AspS9I	GGNCC	8 cut(s)	187, 247, 695, 1039, 1141, 1157, 1265, 1319
AsuC2I	CCSGG	4 cut(s)	312, 324, 1407, 1408
AsuHPI	GGTGA	3 cut(s)	475, 608, 1422
AvaI	CYCGRG	1 cut(s)	1406
AvaII	GGWCC	5 cut(s)	187, 247, 695, 1157, 1265
AxyI	CCTNAGG	1 cut(s)	1086
BaeGI	GKGCMC	2 cut(s)	324, 420
BalI	TGGCCA	1 cut(s)	843
BamHI	GGATCC	1 cut(s)	1183
BanI	GGYRCC	2 cut(s)	152, 1424
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	3 cut(s)	57, 108, 420
BbvI	GCAGC	6 cut(s)	455, 694, 896, 1078, 1139, 1295
BccI	CCATC	6 cut(s)	209, 506, 695, 920, 1183, 1441
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BcnI	CCSGG	4 cut(s)	312, 324, 1407, 1408
BcoDI	GTCTC	2 cut(s)	618, 1359
BfaI	CTAG	3 cut(s)	905, 1026, 1227
BfmI	CTRYAG	2 cut(s)	690, 1281
BfoI	RGCGCY	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	235
BglI	GCCNNNNNGGC	1 cut(s)	1196
BisI	GCNGC	8 cut(s)	20, 444, 683, 885, 1038, 1092, 1128, 1284
BlsI	GCNGC	8 cut(s)	21, 445, 684, 886, 1039, 1093, 1129, 1285
Bme18I	GGWCC	5 cut(s)	187, 247, 695, 1157, 1265
BmeT110I	CYCGRG	1 cut(s)	1406
BmgT120I	GGNCC	8 cut(s)	187, 247, 695, 1039, 1141, 1157, 1265, 1319
BmiI	GGNNCC	6 cut(s)	154, 237, 1185, 1224, 1342, 1426
BmsI	GCATC	4 cut(s)	466, 497, 1012, 1265
BpmI	CTGGAG	4 cut(s)	740, 1050, 1137, 1146
BpuMI	CCSGG	4 cut(s)	312, 324, 1407, 1408
BsaAI	YACGTR	1 cut(s)	569
BsaHI	GRCGYC	3 cut(s)	17, 41, 153
BsaJI	CCNNGG	9 cut(s)	74, 87, 231, 250, 527, 1105, 1344, 1406, 1407
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	9 cut(s)	76, 196, 625, 692, 1067, 1179, 1180, 1391, 1413
Bse1I	ACTGG	2 cut(s)	610, 1292
Bse21I	CCTNAGG	1 cut(s)	1086
Bse3DI	GCAATG	2 cut(s)	1117, 1293
BseDI	CCNNGG	9 cut(s)	74, 87, 231, 250, 527, 1105, 1344, 1406, 1407
BseGI	GGATG	4 cut(s)	227, 517, 781, 1433
BseLI	CCNNNNNNNGG	9 cut(s)	76, 196, 625, 692, 1067, 1179, 1180, 1391, 1413
BseMI	GCAATG	2 cut(s)	1117, 1293
BseMII	CTCAG	2 cut(s)	1100, 1370
BseNI	ACTGG	2 cut(s)	610, 1292
BseRI	GAGGAG	4 cut(s)	104, 107, 1053, 1140
BseSI	GKGCMC	2 cut(s)	324, 420
BseXI	GCAGC	6 cut(s)	455, 694, 896, 1078, 1139, 1295
BsgI	GTGCAG	2 cut(s)	1146, 1157
BshFI	GGCC	8 cut(s)	170, 200, 843, 1040, 1142, 1320, 1417, 1446
BshNI	GGYRCC	2 cut(s)	152, 1424
BsiHKAI	GWGCWC	3 cut(s)	57, 108, 420
BsiHKCI	CYCGRG	1 cut(s)	1406
BsiSI	CCGG	4 cut(s)	28, 311, 324, 1407
BslFI	GGGAC	4 cut(s)	28, 641, 924, 1019
BslI	CCNNNNNNNGG	9 cut(s)	76, 196, 625, 692, 1067, 1179, 1180, 1391, 1413
BsmAI	GTCTC	2 cut(s)	618, 1359
BsmFI	GGGAC	4 cut(s)	28, 641, 924, 1019
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	8 cut(s)	170, 200, 843, 1040, 1142, 1320, 1417, 1446
BsoBI	CYCGRG	1 cut(s)	1406
Bsp1286I	GDGCHC	4 cut(s)	57, 108, 324, 420
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	6 cut(s)	99, 126, 592, 871, 970, 1183
Bsp19I	CCATGG	1 cut(s)	1105
BspACI	CCGC	6 cut(s)	20, 486, 582, 641, 882, 1037
BspANI	GGCC	8 cut(s)	170, 200, 843, 1040, 1142, 1320, 1417, 1446
BspCNI	CTCAG	2 cut(s)	1099, 1369
BspLI	GGNNCC	6 cut(s)	154, 237, 1185, 1224, 1342, 1426
BspMAI	CTGCAG	1 cut(s)	1285
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	1178, 1191
BspT107I	GGYRCC	2 cut(s)	152, 1424
BsrBI	CCGCTC	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	1117, 1293
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	610, 1292
BssECI	CCNNGG	9 cut(s)	74, 87, 231, 250, 527, 1105, 1344, 1406, 1407
BssMI	GATC	6 cut(s)	99, 126, 592, 871, 970, 1183
BssNAI	GTATAC	1 cut(s)	524
BssNI	GRCGYC	3 cut(s)	17, 41, 153
BssT1I	CCWWGG	1 cut(s)	1105
Bst1107I	GTATAC	1 cut(s)	524
Bst4CI	ACNGT	6 cut(s)	262, 691, 772, 790, 811, 1121
BstACI	GRCGYC	3 cut(s)	17, 41, 153
BstAPI	GCANNNNNTGC	2 cut(s)	503, 890
BstAUI	TGTACA	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	569
BstC8I	GCNNGC	7 cut(s)	240, 364, 448, 1035, 1140, 1197, 1201
BstDEI	CTNAG	2 cut(s)	1086, 1356
BstDSI	CCRYGG	3 cut(s)	74, 250, 1105
BstEII	GGTNACC	2 cut(s)	340, 1055
BstENI	CCTNNNNNAGG	3 cut(s)	194, 690, 1065
BstF5I	GGATG	4 cut(s)	227, 517, 781, 1433
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	3 cut(s)	86, 155, 244
BstKTI	GATC	6 cut(s)	102, 129, 595, 874, 973, 1186
BstMAI	GTCTC	2 cut(s)	618, 1359
BstMBI	GATC	6 cut(s)	99, 126, 592, 871, 970, 1183
BstPI	GGTNACC	2 cut(s)	340, 1055
BstSFI	CTRYAG	2 cut(s)	690, 1281
BstSLI	GKGCMC	2 cut(s)	324, 420
BstSNI	TACGTA	1 cut(s)	569
BstV1I	GCAGC	6 cut(s)	455, 694, 896, 1078, 1139, 1295
BstX2I	RGATCY	1 cut(s)	1183
BstXI	CCANNNNNNTGG	2 cut(s)	208, 1074
BstYI	RGATCY	1 cut(s)	1183
BstZ17I	GTATAC	1 cut(s)	524
Bsu36I	CCTNAGG	1 cut(s)	1086
BsuRI	GGCC	8 cut(s)	170, 200, 843, 1040, 1142, 1320, 1417, 1446
BtgI	CCRYGG	3 cut(s)	74, 250, 1105
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	4 cut(s)	227, 517, 781, 1433
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	6 cut(s)	478, 768, 807, 913, 1126, 1299
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	7 cut(s)	240, 364, 448, 1035, 1140, 1197, 1201
CaiI	CAGNNNCTG	1 cut(s)	1133
CfoI	GCGC	3 cut(s)	86, 155, 244
Cfr13I	GGNCC	8 cut(s)	187, 247, 695, 1039, 1141, 1157, 1265, 1319
Cfr9I	CCCGGG	1 cut(s)	1406
CseI	GACGC	2 cut(s)	25, 49
CsiI	ACCWGGT	1 cut(s)	1384
Csp6I	GTAC	6 cut(s)	31, 265, 532, 1102, 1117, 1230
CspCI	CAANNNNNGTGG	2 cut(s)	1275, 1310
CviAII	CATG	4 cut(s)	558, 1106, 1179, 1192
CviQI	GTAC	6 cut(s)	31, 265, 532, 1102, 1117, 1230
DdeI	CTNAG	2 cut(s)	1086, 1356
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	6 cut(s)	101, 128, 594, 873, 972, 1185
DpnII	GATC	6 cut(s)	99, 126, 592, 871, 970, 1183
DraIII	CACNNNGTG	3 cut(s)	141, 394, 790
EaeI	YGGCCR	2 cut(s)	841, 1444
Ecl136II	GAGCTC	1 cut(s)	106
Eco105I	TACGTA	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	1105
Eco147I	AGGCCT	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	5 cut(s)	187, 247, 695, 1157, 1265
Eco53kI	GAGCTC	1 cut(s)	106
Eco81I	CCTNAGG	1 cut(s)	1086
Eco88I	CYCGRG	1 cut(s)	1406
Eco91I	GGTNACC	2 cut(s)	340, 1055
EcoICRI	GAGCTC	1 cut(s)	106
EcoNI	CCTNNNNNAGG	3 cut(s)	194, 690, 1065
EcoO109I	RGGNCCY	2 cut(s)	695, 1157
EcoO65I	GGTNACC	2 cut(s)	340, 1055
EcoRI	GAATTC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	1105
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	1105
FaeI	CATG	4 cut(s)	561, 1109, 1182, 1195
FaqI	GGGAC	4 cut(s)	28, 641, 924, 1019
FatI	CATG	4 cut(s)	557, 1105, 1178, 1191
FblI	GTMKAC	2 cut(s)	5, 523
Fnu4HI	GCNGC	8 cut(s)	20, 444, 683, 885, 1038, 1092, 1128, 1284
FokI	GGATG	4 cut(s)	214, 524, 788, 1420
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	8 cut(s)	20, 444, 683, 885, 1038, 1092, 1128, 1284
FspBI	CTAG	3 cut(s)	905, 1026, 1227
FspI	TGCGCA	1 cut(s)	243
GlaI	GCGC	3 cut(s)	85, 154, 243
GluI	GCNGC	8 cut(s)	20, 444, 683, 885, 1038, 1092, 1128, 1284
GsuI	CTGGAG	4 cut(s)	740, 1050, 1137, 1146
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	8 cut(s)	170, 200, 843, 1040, 1142, 1320, 1417, 1446
HapII	CCGG	4 cut(s)	28, 311, 324, 1407
HgaI	GACGC	2 cut(s)	25, 49
HhaI	GCGC	3 cut(s)	86, 155, 244
Hin1I	GRCGYC	3 cut(s)	17, 41, 153
Hin1II	CATG	4 cut(s)	561, 1109, 1182, 1195
Hin6I	GCGC	3 cut(s)	84, 153, 242
HinP1I	GCGC	3 cut(s)	84, 153, 242
HincII	GTYRAC	4 cut(s)	6, 133, 298, 1244
HindII	GTYRAC	4 cut(s)	6, 133, 298, 1244
HindIII	AAGCTT	1 cut(s)	941
HinfI	GANTC	2 cut(s)	463, 1081
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	4 cut(s)	28, 311, 324, 1407
HphI	GGTGA	3 cut(s)	475, 608, 1422
Hpy166II	GTNNAC	8 cut(s)	6, 33, 133, 265, 298, 418, 524, 1244
Hpy188I	TCNGA	4 cut(s)	187, 235, 597, 1098
Hpy188III	TCNNGA	3 cut(s)	542, 698, 905
Hpy8I	GTNNAC	8 cut(s)	6, 33, 133, 265, 298, 418, 524, 1244
Hpy99I	CGWCG	3 cut(s)	49, 179, 554
HpyAV	CCTTC	3 cut(s)	43, 181, 656
HpyCH4III	ACNGT	6 cut(s)	262, 691, 772, 790, 811, 1121
HpyCH4IV	ACGT	3 cut(s)	549, 568, 729
HpyF3I	CTNAG	2 cut(s)	1086, 1356
HpySE526I	ACGT	3 cut(s)	549, 568, 729
Hsp92I	GRCGYC	3 cut(s)	17, 41, 153
Hsp92II	CATG	4 cut(s)	561, 1109, 1182, 1195
HspAI	GCGC	3 cut(s)	84, 153, 242
KasI	GGCGCC	1 cut(s)	152
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	6 cut(s)	99, 126, 592, 871, 970, 1183
LmnI	GCTCC	8 cut(s)	60, 94, 235, 648, 1070, 1099, 1153, 1228
Lsp1109I	GCAGC	6 cut(s)	455, 694, 896, 1078, 1139, 1295
LweI	GCATC	4 cut(s)	466, 497, 1012, 1265
MabI	ACCWGGT	1 cut(s)	1384
MaeI	CTAG	3 cut(s)	905, 1026, 1227
MaeII	ACGT	3 cut(s)	549, 568, 729
MaeIII	GTNAC	6 cut(s)	65, 340, 481, 725, 766, 1055
MalI	GATC	6 cut(s)	101, 128, 594, 873, 972, 1185
MbiI	CCGCTC	1 cut(s)	643
MboI	GATC	6 cut(s)	99, 126, 592, 871, 970, 1183
MboII	GAAGA	4 cut(s)	528, 847, 1293, 1320
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	1183
MhlI	GDGCHC	4 cut(s)	57, 108, 324, 420
MlsI	TGGCCA	1 cut(s)	843
MluCI	AATT	5 cut(s)	179, 291, 675, 744, 819
MluNI	TGGCCA	1 cut(s)	843
Mly113I	GGCGCC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	843
Mph1103I	ATGCAT	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	843
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	2 cut(s)	206, 1110
Msp20I	TGGCCA	1 cut(s)	843
MspI	CCGG	4 cut(s)	28, 311, 324, 1407
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	508
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	4 cut(s)	312, 324, 1407, 1408
NcoI	CCATGG	1 cut(s)	1105
NdeII	GATC	6 cut(s)	99, 126, 592, 871, 970, 1183
NlaIII	CATG	4 cut(s)	561, 1109, 1182, 1195
NlaIV	GGNNCC	6 cut(s)	154, 237, 1185, 1224, 1342, 1426
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	481, 766
NsbI	TGCGCA	1 cut(s)	243
NsiI	ATGCAT	1 cut(s)	508
PceI	AGGCCT	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 126
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	463, 1081
PflFI	GACNNNGTC	1 cut(s)	43
PfoI	TCCNGGA	3 cut(s)	310, 1066, 1162
PkrI	GCNGC	8 cut(s)	21, 445, 684, 886, 1039, 1093, 1129, 1285
PluTI	GGCGCC	1 cut(s)	156
Ppu21I	YACGTR	1 cut(s)	569
PpuMI	RGGWCCY	2 cut(s)	695, 1157
Psp124BI	GAGCTC	1 cut(s)	108
Psp5II	RGGWCCY	2 cut(s)	695, 1157
PspEI	GGTNACC	2 cut(s)	340, 1055
PspN4I	GGNNCC	6 cut(s)	154, 237, 1185, 1224, 1342, 1426
PspPI	GGNCC	8 cut(s)	187, 247, 695, 1039, 1141, 1157, 1265, 1319
PspPPI	RGGWCCY	2 cut(s)	695, 1157
PstI	CTGCAG	1 cut(s)	1285
PstNI	CAGNNNCTG	1 cut(s)	1133
PsuI	RGATCY	1 cut(s)	1183
PsyI	GACNNNGTC	1 cut(s)	43
RsaI	GTAC	6 cut(s)	32, 266, 533, 1103, 1118, 1231
RsaNI	GTAC	6 cut(s)	31, 265, 532, 1102, 1117, 1230
RseI	CAYNNNNRTG	2 cut(s)	206, 1110
SacI	GAGCTC	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	8 cut(s)	20, 444, 683, 885, 1038, 1092, 1128, 1284
Sau3AI	GATC	6 cut(s)	99, 126, 592, 871, 970, 1183
Sau96I	GGNCC	8 cut(s)	187, 247, 695, 1039, 1141, 1157, 1265, 1319
SduI	GDGCHC	4 cut(s)	57, 108, 324, 420
SexAI	ACCWGGT	1 cut(s)	1384
SfaNI	GCATC	4 cut(s)	466, 497, 1012, 1265
SfcI	CTRYAG	2 cut(s)	690, 1281
SfoI	GGCGCC	1 cut(s)	154
SinI	GGWCC	5 cut(s)	187, 247, 695, 1157, 1265
SmaI	CCCGGG	1 cut(s)	1408
SmiMI	CAYNNNNRTG	2 cut(s)	206, 1110
SnaBI	TACGTA	1 cut(s)	569
Sse9I	AATT	5 cut(s)	179, 291, 675, 744, 819
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	6 cut(s)	20, 486, 582, 641, 882, 1037
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	3 cut(s)	905, 1026, 1227
SstI	GAGCTC	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	1105
TaaI	ACNGT	6 cut(s)	262, 691, 772, 790, 811, 1121
TaiI	ACGT	3 cut(s)	552, 571, 732
TaqI	TCGA	4 cut(s)	5, 47, 102, 177
TasI	AATT	5 cut(s)	179, 291, 675, 744, 819
TatI	WGTACW	2 cut(s)	264, 1116
TauI	GCSGC	2 cut(s)	22, 1040
TfiI	GAWTC	2 cut(s)	463, 1081
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	6 cut(s)	478, 775, 814, 920, 1126, 1299
TseFI	GTSAC	2 cut(s)	481, 766
TseI	GCWGC	6 cut(s)	443, 682, 884, 1091, 1127, 1283
Tsp45I	GTSAC	2 cut(s)	481, 766
TspDTI	ATGAA	5 cut(s)	216, 546, 564, 935, 1389
TspGWI	ACGGA	2 cut(s)	53, 239
TspMI	CCCGGG	1 cut(s)	1406
TspRI	CASTG	6 cut(s)	478, 775, 814, 920, 1126, 1299
Tth111I	GACNNNGTC	1 cut(s)	43
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	5 cut(s)	187, 247, 695, 1157, 1265
XagI	CCTNNNNNAGG	3 cut(s)	194, 690, 1065
XapI	RAATTY	1 cut(s)	179
XbaI	TCTAGA	1 cut(s)	904
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1049, 1259
XmaI	CCCGGG	1 cut(s)	1406
XmiI	GTMKAC	2 cut(s)	5, 523
XspI	CTAG	3 cut(s)	905, 1026, 1227
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.