Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004917

Physical Location & Seq

Genomic Coordinates Forward (+)

66136984 .. 66139503

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0531400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCTTTCAATTTTATACCAAAGCTGACCCCTCATCTTTCTCCAGTGTTTCTGCTCGTTCTATCCATGACTCTATTTTTAGCCCAAGCTGCACCTGTTGAGCAATCTGGGTCTGAAAAAGAATTTGAGATGAAGTACTACATCATGGAAATCCAGTCCGGTCCCAATGCCACAGTGGTACCTGTTGCAGGTATAGCCGGAAAGCTTTGGTCCCCGACCAACTGGGGAACAATTCTCGTCGGTGATAGCCCGTTGGTTGAAGACCCAAGCCCATACTCACGAAAAGTTGGCCAAGTCCGGGGCTTGGAGAGAGTTGCATCGGTCGATCATTCCGAAGACGATGACAACGAGGAAGAGGATGAGAAAAAAGAAAATGGAGGTGTAAACCCAGACCGTTGCAAAATGTTTGAGCTTACCCATGTCCACGATAATGAAAAACCTGATGAACCGAATTCTAAAGCTATTGCCTTGATGAAGGACAAGATTGACAAGATGAAGACTACAAAGAGGGCATCCCAACTTCCAGAGGTTCTTAATGATTTTGAAATCAATGAAGTATATGTGGCTGTGCTTGGAAAAGAGACACGTGGAGGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

199

Amino Acids

22.09

Weight (kDa)

4.87

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	44 - 108	3.1e-09	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01150 AT3G01150 AT3G01150 AT3G01150
fragaria_vesca	FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200
malus_domestica	MD00G1125500.v1.1 MD00G1167800.v1.1 MD09G1053000.v1.1
prunus_persica	Prupe.3G265700_v2.0.a1 Prupe.3G265700_v2.0.a1
pyrus_communis	pycom111g04420 pycom17g04840
rosa_chinensis	RchiOBHm_Chr2g0167691
rosa_laevigata	RLG00000021746
rosa_multiflora	Rmu_sc0001970.1_g000017 Rmu_sc0002143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083330
rosa_rugosa	Rorug02G0531300 Rorug02G0531400
rosa_samantha	Rh2AG600300 Rh2BG610800 Rh2CG581200 Rh2DG623500
rosa_wichuraiana	Rw2G049830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	179
Acc65I	GGTACC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	122, 451
AcvI	CACGTG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	137, 180
AfiI	CCNNNNNNNGG	3 cut(s)	188, 298, 304
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	10, 260, 545
AluBI	AGCT	5 cut(s)	25, 89, 205, 412, 461
AluI	AGCT	5 cut(s)	25, 89, 205, 412, 461
Alw26I	GTCTC	1 cut(s)	575
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	122, 451
Asp718I	GGTACC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	161, 210
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	161, 210
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BalI	TGGCCA	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	178
BbrPI	CACGTG	1 cut(s)	587
BbsI	GAAGAC	3 cut(s)	267, 342, 503
BbvI	GCAGC	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	2 cut(s)	161, 210
BmgT120I	GGNCC	2 cut(s)	161, 210
BmiI	GGNNCC	3 cut(s)	163, 180, 212
BmrFI	CCNGG	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	326, 521
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	3 cut(s)	267, 342, 503
BpmI	CTGGAG	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	299
BsaAI	YACGTR	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 298, 304
Bse1I	ACTGG	3 cut(s)	44, 154, 227
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	364, 512
BseLI	CCNNNNNNNGG	3 cut(s)	188, 298, 304
BseNI	ACTGG	3 cut(s)	44, 154, 227
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	291
BshNI	GGYRCC	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	324
BsiSI	CCGG	3 cut(s)	159, 198, 298
BslFI	GGGAC	2 cut(s)	147, 196
BslI	CCNNNNNNNGG	3 cut(s)	188, 298, 304
BsmAI	GTCTC	1 cut(s)	575
BsmFI	GGGAC	2 cut(s)	147, 196
BsnI	GGCC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	163, 180, 212
BspMI	ACCTGC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	44, 154, 227
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	175, 395
Bst6I	CTCTTC	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	587
BstENI	CCTNNNNNAGG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	364, 512
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	1 cut(s)	325
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 194
BstSCI	CCNGG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	3 cut(s)	267, 342, 503
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	364, 512
BtsIMutI	CAGTG	2 cut(s)	51, 180
BveI	ACCTGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	161, 210
Csp6I	GTAC	2 cut(s)	136, 179
CviAII	CATG	3 cut(s)	67, 145, 419
CviQI	GTAC	2 cut(s)	136, 179
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	161, 210
Eco72I	CACGTG	1 cut(s)	587
EcoNI	CCTNNNNNAGG	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	451
FaeI	CATG	3 cut(s)	70, 148, 422
FaiI	YATR	8 cut(s)	17, 68, 146, 194, 274, 420, 559, 561
FaqI	GGGAC	2 cut(s)	147, 196
FatI	CATG	3 cut(s)	66, 144, 418
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	371, 499
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	3 cut(s)	159, 198, 298
Hin1II	CATG	3 cut(s)	70, 148, 422
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	3 cut(s)	159, 198, 298
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	385, 424
Hpy188I	TCNGA	2 cut(s)	115, 334
Hpy188III	TCNNGA	2 cut(s)	279, 524
Hpy8I	GTNNAC	2 cut(s)	385, 424
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	2 cut(s)	175, 395
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	4 cut(s)	92, 188, 317, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 194
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	3 cut(s)	70, 148, 422
KpnI	GGTACC	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	325
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	326, 521
MaeII	ACGT	1 cut(s)	586
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	272, 347, 365, 508
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	4 cut(s)	10, 122, 231, 451
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	7 cut(s)	42, 343, 349, 371, 501, 520, 584
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	429
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	3 cut(s)	159, 198, 298
MspR9I	CCNGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	89, 194
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	70, 148, 422
NlaIV	GGNNCC	3 cut(s)	163, 180, 212
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 345
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	64
PmaCI	CACGTG	1 cut(s)	587
PmlI	CACGTG	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	587
PspCI	CACGTG	1 cut(s)	587
PspN4I	GGNNCC	3 cut(s)	163, 180, 212
PspPI	GGNCC	2 cut(s)	161, 210
RsaI	GTAC	2 cut(s)	137, 180
RsaNI	GTAC	2 cut(s)	136, 179
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	2 cut(s)	161, 210
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	299
SfaNI	GCATC	2 cut(s)	326, 521
SinI	GGWCC	2 cut(s)	161, 210
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	4 cut(s)	10, 122, 231, 451
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	175, 395
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	1 cut(s)	324
TaqII	GACCGA	1 cut(s)	310
TasI	AATT	4 cut(s)	10, 122, 231, 451
TatI	WGTACW	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	2 cut(s)	51, 180
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	6 cut(s)	146, 447, 459, 488, 509, 567
TspRI	CASTG	2 cut(s)	51, 180
VpaK11BI	GGWCC	2 cut(s)	161, 210
XagI	CCTNNNNNAGG	1 cut(s)	186
XapI	RAATTY	2 cut(s)	122, 451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.