Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002143.1

Orthogroup ID

OG0004917

Physical Location & Seq

Genomic Coordinates Forward (+)

50 .. 3427

Gene Structure 3378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002143.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggtttcatattatgcttcatcgtcagagcctgctcaggtccggggtaaaacagtttacatccagtattcaaatagacacgaaattgtgaacaacaaaagccctggagatgttcctgggaatgtgttgctggtaaccatcgagggtgttgaagctggtgatgtgagcattgatgtcattcacttggtgttttctgcttttgggtttgtgcacaagattgctactttcgaaaaggctgcaggcttccaggcattgattcagttcagtgatgctgacactgcatctgcggctaggaatgccttggatggaagaagtatacccaggtacttgcttcctgagcatgtcggttcatgccacttgcgtatctcgtattctgcacacactgatctgaacatcaagttccagtcacacagaagcagggattatacaaatccataccttcctgtaaatcctactgcaatagagggagttgtgcagcctgcagtaggtcctgatggaaagaagaaagagatggagagtaatgtgcttctggcttccattgaaaatatgcagtatgctgtcactgtggatgttcttcacacggtattttcagcgtttggcacagtacaaaaaattgctatattcgagaagaatggtcaaacacaggcattagttcaataccctgatattgctaccgcagctgttgccagagaagctctagaggggcactgcatatatgatggtggctattgtaagcttcatctatcatactctcgtcatactgatctcaatgtaaaggcttacagtgacaaaagtagagattatacaatcccagatgctagtttgcttgcggtgcaatctgggtaccctgcagctcctgcagcctggcagaatgcgcaggctgctccagtgtaccatggaaatgaatacagtgctgcagcagctggaccgggtcaaggtcctcctggacaagtgccatcatgggatccaaacatgcaagcaggccgatcatcctttgtttcggttcctagcacctttcctggtcagacatttcctacatcatcaggtggtccggtatattcctctgcaccaatgcctgcgggttcatcacctccaattacttcaggtgtggatccaaggggaatgcatcagccaggtgctccaccgcatgtgcgaccaggtggtgcttcacccccaggcgttcgacctcctggtgcttcaccttcttattacggccaatcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

407

Amino Acids

43.17

Weight (kDa)

6.38

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01150 AT3G01150 AT3G01150 AT3G01150
fragaria_vesca	FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200
malus_domestica	MD00G1125500.v1.1 MD00G1167800.v1.1 MD09G1053000.v1.1
prunus_persica	Prupe.3G265700_v2.0.a1 Prupe.3G265700_v2.0.a1
pyrus_communis	pycom111g04420 pycom17g04840
rosa_chinensis	RchiOBHm_Chr2g0167691
rosa_laevigata	RLG00000021746
rosa_multiflora	Rmu_sc0001970.1_g000017 Rmu_sc0002143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083330
rosa_rugosa	Rorug02G0531300 Rorug02G0531400
rosa_samantha	Rh2AG600300 Rh2BG610800 Rh2CG581200 Rh2DG623500
rosa_wichuraiana	Rw2G049830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	876
Acc65I	GGTACC	1 cut(s)	843
AccB1I	GGYRCC	1 cut(s)	843
AccI	GTMKAC	1 cut(s)	316
AciI	CCGC	5 cut(s)	287, 675, 830, 1079, 1145
AclWI	GGATC	4 cut(s)	959, 972, 1106, 1119
AcoI	YGGCCR	1 cut(s)	1213
AcuI	CTGAAG	1 cut(s)	1086
AdeI	CACNNNGTG	1 cut(s)	187
AfaI	GTAC	4 cut(s)	326, 606, 845, 893
AfiI	CCNNNNNNNGG	2 cut(s)	485, 935
AgsI	TTSAA	4 cut(s)	72, 152, 542, 656
AluBI	AGCT	6 cut(s)	155, 680, 695, 736, 854, 923
AluI	AGCT	6 cut(s)	155, 680, 695, 736, 854, 923
Alw21I	GWGCWC	2 cut(s)	213, 1141
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	4 cut(s)	959, 972, 1106, 1119
AlwNI	CAGNNNCTG	3 cut(s)	32, 857, 923
AoxI	GGCC	2 cut(s)	982, 1213
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	9 cut(s)	236, 475, 677, 851, 860, 881, 914, 917, 920
Asp718I	GGTACC	1 cut(s)	843
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	5 cut(s)	40, 488, 926, 938, 1049
AsuC2I	CCSGG	2 cut(s)	44, 930
AsuHPI	GGTGA	4 cut(s)	170, 1080, 1161, 1191
AsuII	TTCGAA	1 cut(s)	228
AvaII	GGWCC	5 cut(s)	40, 488, 926, 938, 1049
BaeGI	GKGCMC	2 cut(s)	213, 708
BaeI	ACNNNNGTAYC	2 cut(s)	346, 379
BamHI	GGATCC	2 cut(s)	964, 1111
BanI	GGYRCC	1 cut(s)	843
Bbv12I	GWGCWC	2 cut(s)	213, 1141
BbvI	GCAGC	9 cut(s)	223, 487, 689, 863, 868, 872, 901, 929, 932
BccI	CCATC	6 cut(s)	146, 299, 488, 505, 713, 964
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BcnI	CCSGG	2 cut(s)	44, 930
BfaI	CTAG	4 cut(s)	291, 698, 819, 1008
BfmI	CTRYAG	5 cut(s)	237, 480, 849, 858, 915
Bme18I	GGWCC	5 cut(s)	40, 488, 926, 938, 1049
BmgT120I	GGNCC	5 cut(s)	40, 488, 926, 938, 1049
BmiI	GGNNCC	4 cut(s)	845, 966, 1005, 1113
BmsI	GCATC	4 cut(s)	259, 290, 805, 1135
BpmI	CTGGAG	2 cut(s)	126, 870
Bpu10I	CCTNAGC	2 cut(s)	36, 336
Bpu14I	TTCGAA	1 cut(s)	228
BpuMI	CCSGG	2 cut(s)	44, 930
BsaJI	CCNNGG	8 cut(s)	43, 103, 116, 300, 320, 895, 1115, 1174
BsaWI	WCCGGW	1 cut(s)	1051
Bsc4I	CCNNNNNNNGG	2 cut(s)	485, 935
Bse1I	ACTGG	3 cut(s)	64, 403, 887
BseDI	CCNNGG	8 cut(s)	43, 103, 116, 300, 320, 895, 1115, 1174
BseGI	GGATG	4 cut(s)	60, 310, 574, 989
BseLI	CCNNNNNNNGG	2 cut(s)	485, 935
BseMII	CTCAG	2 cut(s)	50, 327
BseNI	ACTGG	3 cut(s)	64, 403, 887
BseSI	GKGCMC	2 cut(s)	213, 708
BseXI	GCAGC	9 cut(s)	223, 487, 689, 863, 868, 872, 901, 929, 932
BsgI	GTGCAG	3 cut(s)	360, 494, 1050
BshFI	GGCC	2 cut(s)	984, 1215
BshNI	GGYRCC	1 cut(s)	843
BsiHKAI	GWGCWC	2 cut(s)	213, 1141
BsiSI	CCGG	3 cut(s)	43, 929, 1052
BslI	CCNNNNNNNGG	2 cut(s)	485, 935
BsmI	GAATGC	3 cut(s)	301, 877, 1128
BsnI	GGCC	2 cut(s)	984, 1215
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	213, 708, 1141
Bsp143I	GATC	5 cut(s)	385, 763, 964, 986, 1111
Bsp19I	CCATGG	1 cut(s)	895
BspACI	CCGC	5 cut(s)	287, 675, 830, 1079, 1145
BspANI	GGCC	2 cut(s)	984, 1215
BspCNI	CTCAG	2 cut(s)	49, 328
BspLI	GGNNCC	4 cut(s)	845, 966, 1005, 1113
BspMAI	CTGCAG	5 cut(s)	241, 484, 853, 862, 919
BspPI	GGATC	4 cut(s)	959, 972, 1106, 1119
BspT104I	TTCGAA	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	843
BsrI	ACTGG	3 cut(s)	64, 403, 887
BssECI	CCNNGG	8 cut(s)	43, 103, 116, 300, 320, 895, 1115, 1174
BssMI	GATC	5 cut(s)	385, 763, 964, 986, 1111
BssNAI	GTATAC	1 cut(s)	317
BssT1I	CCWWGG	3 cut(s)	300, 895, 1115
Bst1107I	GTATAC	1 cut(s)	317
Bst4CI	ACNGT	6 cut(s)	55, 565, 583, 604, 785, 911
BstAPI	GCANNNNNTGC	2 cut(s)	683, 857
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	8 cut(s)	33, 241, 480, 828, 879, 978, 982, 1077
BstDEI	CTNAG	2 cut(s)	36, 336
BstDSI	CCRYGG	1 cut(s)	895
BstEII	GGTNACC	1 cut(s)	133
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	4 cut(s)	60, 310, 574, 989
BstHHI	GCGC	1 cut(s)	877
BstKTI	GATC	5 cut(s)	388, 766, 967, 989, 1114
BstMBI	GATC	5 cut(s)	385, 763, 964, 986, 1111
BstNSI	RCATGY	3 cut(s)	344, 976, 1151
BstPI	GGTNACC	1 cut(s)	133
BstSFI	CTRYAG	5 cut(s)	237, 480, 849, 858, 915
BstSLI	GKGCMC	2 cut(s)	213, 708
BstV1I	GCAGC	9 cut(s)	223, 487, 689, 863, 868, 872, 901, 929, 932
BstX2I	RGATCY	2 cut(s)	964, 1111
BstYI	RGATCY	2 cut(s)	964, 1111
BstZ17I	GTATAC	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	984, 1215
BtgI	CCRYGG	1 cut(s)	895
BtsCI	GGATG	4 cut(s)	60, 310, 574, 989
BtsI	GCAGTG	2 cut(s)	276, 706
BtsIMutI	CAGTG	8 cut(s)	271, 276, 381, 561, 706, 790, 894, 916
Cac8I	GCNNGC	8 cut(s)	33, 241, 480, 828, 879, 978, 982, 1077
CaiI	CAGNNNCTG	3 cut(s)	32, 857, 923
CfoI	GCGC	1 cut(s)	877
Cfr13I	GGNCC	5 cut(s)	40, 488, 926, 938, 1049
CsiI	ACCWGGT	1 cut(s)	1156
Csp6I	GTAC	4 cut(s)	325, 605, 844, 892
CviAII	CATG	6 cut(s)	341, 351, 896, 960, 973, 1148
CviQI	GTAC	4 cut(s)	325, 605, 844, 892
DdeI	CTNAG	2 cut(s)	36, 336
DpnI	GATC	5 cut(s)	387, 765, 966, 988, 1113
DpnII	GATC	5 cut(s)	385, 763, 964, 986, 1111
DraIII	CACNNNGTG	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	1213
Eco130I	CCWWGG	3 cut(s)	300, 895, 1115
Eco47I	GGWCC	5 cut(s)	40, 488, 926, 938, 1049
Eco57I	CTGAAG	1 cut(s)	1086
Eco91I	GGTNACC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoO109I	RGGNCCY	2 cut(s)	488, 938
EcoO65I	GGTNACC	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	300, 895, 1115
EcoT22I	ATGCAT	1 cut(s)	1128
ErhI	CCWWGG	3 cut(s)	300, 895, 1115
FaeI	CATG	6 cut(s)	344, 354, 899, 963, 976, 1151
FatI	CATG	6 cut(s)	340, 350, 895, 959, 972, 1147
FauI	CCCGC	1 cut(s)	1072
FblI	GTMKAC	1 cut(s)	316
FokI	GGATG	4 cut(s)	47, 317, 581, 976
FspBI	CTAG	4 cut(s)	291, 698, 819, 1008
FspI	TGCGCA	1 cut(s)	876
GlaI	GCGC	1 cut(s)	876
GsuI	CTGGAG	2 cut(s)	126, 870
HaeIII	GGCC	2 cut(s)	984, 1215
HapII	CCGG	3 cut(s)	43, 929, 1052
HhaI	GCGC	1 cut(s)	877
Hin1II	CATG	6 cut(s)	344, 354, 899, 963, 976, 1151
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	3 cut(s)	43, 929, 1052
HphI	GGTGA	4 cut(s)	170, 1080, 1161, 1191
Hpy166II	GTNNAC	5 cut(s)	58, 91, 211, 317, 892
Hpy188I	TCNGA	3 cut(s)	28, 390, 1026
Hpy188III	TCNNGA	4 cut(s)	335, 491, 625, 698
Hpy8I	GTNNAC	5 cut(s)	58, 91, 211, 317, 892
HpyAV	CCTTC	2 cut(s)	449, 1212
HpyCH4III	ACNGT	6 cut(s)	55, 565, 583, 604, 785, 911
HpyF3I	CTNAG	2 cut(s)	36, 336
Hsp92II	CATG	6 cut(s)	344, 354, 899, 963, 976, 1151
HspAI	GCGC	1 cut(s)	875
KpnI	GGTACC	1 cut(s)	847
Kzo9I	GATC	5 cut(s)	385, 763, 964, 986, 1111
LmnI	GCTCC	3 cut(s)	859, 889, 1144
Lsp1109I	GCAGC	9 cut(s)	223, 487, 689, 863, 868, 872, 901, 929, 932
LweI	GCATC	4 cut(s)	259, 290, 805, 1135
MabI	ACCWGGT	1 cut(s)	1156
MaeI	CTAG	4 cut(s)	291, 698, 819, 1008
MaeIII	GTNAC	4 cut(s)	133, 405, 559, 785
MalI	GATC	5 cut(s)	387, 765, 966, 988, 1113
MboI	GATC	5 cut(s)	385, 763, 964, 986, 1111
MboII	GAAGA	4 cut(s)	321, 514, 566, 640
MflI	RGATCY	2 cut(s)	964, 1111
MhlI	GDGCHC	3 cut(s)	213, 708, 1141
MluCI	AATT	3 cut(s)	84, 612, 1095
MnlI	CCTC	7 cut(s)	136, 457, 694, 951, 1072, 1101, 1197
Mph1103I	ATGCAT	1 cut(s)	1128
MslI	CAYNNNNRTG	1 cut(s)	900
MspA1I	CMGCKG	2 cut(s)	680, 923
MspI	CCGG	3 cut(s)	43, 929, 1052
Mva1269I	GAATGC	3 cut(s)	301, 877, 1128
NciI	CCSGG	2 cut(s)	44, 930
NcoI	CCATGG	1 cut(s)	895
NdeII	GATC	5 cut(s)	385, 763, 964, 986, 1111
NlaIII	CATG	6 cut(s)	344, 354, 899, 963, 976, 1151
NlaIV	GGNNCC	4 cut(s)	845, 966, 1005, 1113
NmuCI	GTSAC	3 cut(s)	405, 559, 785
NsbI	TGCGCA	1 cut(s)	876
NsiI	ATGCAT	1 cut(s)	1128
NspI	RCATGY	3 cut(s)	344, 976, 1151
NspV	TTCGAA	1 cut(s)	228
PctI	GAATGC	3 cut(s)	301, 877, 1128
PfeI	GAWTC	1 cut(s)	256
PflFI	GACNNNGTC	1 cut(s)	930
PfoI	TCCNGGA	1 cut(s)	943
PpuMI	RGGWCCY	2 cut(s)	488, 938
Psp5II	RGGWCCY	2 cut(s)	488, 938
PspEI	GGTNACC	1 cut(s)	133
PspN4I	GGNNCC	4 cut(s)	845, 966, 1005, 1113
PspPI	GGNCC	5 cut(s)	40, 488, 926, 938, 1049
PspPPI	RGGWCCY	2 cut(s)	488, 938
PstI	CTGCAG	5 cut(s)	241, 484, 853, 862, 919
PstNI	CAGNNNCTG	3 cut(s)	32, 857, 923
PsuI	RGATCY	2 cut(s)	964, 1111
PsyI	GACNNNGTC	1 cut(s)	930
PvuII	CAGCTG	2 cut(s)	680, 923
RsaI	GTAC	4 cut(s)	326, 606, 845, 893
RsaNI	GTAC	4 cut(s)	325, 605, 844, 892
RseI	CAYNNNNRTG	1 cut(s)	900
Sau3AI	GATC	5 cut(s)	385, 763, 964, 986, 1111
Sau96I	GGNCC	5 cut(s)	40, 488, 926, 938, 1049
SduI	GDGCHC	3 cut(s)	213, 708, 1141
SexAI	ACCWGGT	1 cut(s)	1156
SfaNI	GCATC	4 cut(s)	259, 290, 805, 1135
SfcI	CTRYAG	5 cut(s)	237, 480, 849, 858, 915
SfuI	TTCGAA	1 cut(s)	228
SinI	GGWCC	5 cut(s)	40, 488, 926, 938, 1049
SmiMI	CAYNNNNRTG	1 cut(s)	900
Sse9I	AATT	3 cut(s)	84, 612, 1095
SsiI	CCGC	5 cut(s)	287, 675, 830, 1079, 1145
SspMI	CTAG	4 cut(s)	291, 698, 819, 1008
StyI	CCWWGG	3 cut(s)	300, 895, 1115
TaaI	ACNGT	6 cut(s)	55, 565, 583, 604, 785, 911
TaqI	TCGA	4 cut(s)	141, 228, 624, 1183
TasI	AATT	3 cut(s)	84, 612, 1095
TatI	WGTACW	1 cut(s)	604
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	8 cut(s)	271, 283, 388, 568, 713, 790, 894, 916
TseFI	GTSAC	3 cut(s)	405, 559, 785
TseI	GCWGC	9 cut(s)	236, 475, 677, 851, 860, 881, 914, 917, 920
Tsp45I	GTSAC	3 cut(s)	405, 559, 785
TspDTI	ATGAA	5 cut(s)	9, 339, 728, 918, 1074
TspRI	CASTG	8 cut(s)	271, 283, 388, 568, 713, 790, 894, 916
Tth111I	GACNNNGTC	1 cut(s)	930
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	5 cut(s)	40, 488, 926, 938, 1049
XagI	CCTNNNNNAGG	1 cut(s)	483
XbaI	TCTAGA	1 cut(s)	697
XceI	RCATGY	3 cut(s)	344, 976, 1151
XmiI	GTMKAC	1 cut(s)	316
XspI	CTAG	4 cut(s)	291, 698, 819, 1008
Zsp2I	ATGCAT	1 cut(s)	1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.