Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0004917

Physical Location & Seq

Genomic Coordinates Reverse (-)

2669170 .. 2670938

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCGACATCGGGTACGCCGCAGTTCCGGTACACGCAGACGCCGTCGAAGGTGCTCCACCTCCGCAACCTACCGTGGGAGTGCGCCGAGGAGGAGCTCATCGAGCTCTGCAAACCTTTCGGCAAGATCGTCAACACCAAGTGTAATGTCGGCGCCAATCGCAATCAGGCCTTCGTCGAATTCGCAGACCTAAACCAGGCCATAAATATGGTTTCGTATTATGCTTCATCCTCGGAGCCTGCGCAGGTCCGTGGTAAAACCGTTTACATTCAGTATTCAAATAGACATGAAATTGTCAACAACAAAAGTCCGGGAGACGTACCCGGAAATGTCTTGTTGGTAACCATTGAGGGTGTTGAAGCCGGCGATGTGAGCATTGATGTTATTCACTTGGTGTTCTCTGCTTTTGGCTTTGTTCACAAGATTGCTACTTTTGAAAAAGCAGCGGGCTTCCAGGCATTGATTCAGTTCAGTGACGCTGGCACTGCATCTATGGCAAGGAATGCGTTGGATGGAAGAAGCATACCCAGGTACTTGCTTCCAGAGCATGTCGGTTCCTGCCACTTACGTATTTCTTATTCGGCACACACTGATCTGAACATCAAGTTCCAGTCTCACCGAAGCAGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

211

Amino Acids

23.26

Weight (kDa)

7.09

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01150 AT3G01150 AT3G01150 AT3G01150
fragaria_vesca	FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200
malus_domestica	MD00G1125500.v1.1 MD00G1167800.v1.1 MD09G1053000.v1.1
prunus_persica	Prupe.3G265700_v2.0.a1 Prupe.3G265700_v2.0.a1
pyrus_communis	pycom111g04420 pycom17g04840
rosa_chinensis	RchiOBHm_Chr2g0167691
rosa_laevigata	RLG00000021746
rosa_multiflora	Rmu_sc0001970.1_g000017 Rmu_sc0002143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083330
rosa_rugosa	Rorug02G0531300 Rorug02G0531400
rosa_samantha	Rh2AG600300 Rh2BG610800 Rh2CG581200 Rh2DG623500
rosa_wichuraiana	Rw2G049830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	20, 64, 446
AcsI	RAATTY	1 cut(s)	179
AcyI	GRCGYC	2 cut(s)	41, 153
AdeI	CACNNNGTG	2 cut(s)	141, 394
AfaI	GTAC	4 cut(s)	16, 32, 321, 533
AfiI	CCNNNNNNNGG	3 cut(s)	76, 196, 625
AgsI	TTSAA	3 cut(s)	279, 359, 437
AjnI	CCWGG	3 cut(s)	195, 453, 527
AluBI	AGCT	2 cut(s)	97, 106
AluI	AGCT	2 cut(s)	97, 106
Alw21I	GWGCWC	3 cut(s)	57, 99, 108
Alw26I	GTCTC	2 cut(s)	309, 618
AoxI	GGCC	2 cut(s)	168, 198
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	179
AspLEI	GCGC	3 cut(s)	86, 155, 244
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	2 cut(s)	312, 324
AsuHPI	GGTGA	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	99, 108
Bbv12I	GWGCWC	3 cut(s)	57, 99, 108
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	3 cut(s)	197, 455, 529
BcnI	CCSGG	2 cut(s)	312, 324
BcoDI	GTCTC	2 cut(s)	309, 618
BfoI	RGCGCY	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	20, 444
BlsI	GCNGC	2 cut(s)	21, 445
Bme1390I	CCNGG	5 cut(s)	197, 312, 324, 455, 529
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	3 cut(s)	154, 237, 556
BmrFI	CCNGG	5 cut(s)	197, 312, 324, 455, 529
BmsI	GCATC	1 cut(s)	497
BpuMI	CCSGG	2 cut(s)	312, 324
BsaAI	YACGTR	1 cut(s)	569
BsaHI	GRCGYC	2 cut(s)	41, 153
BsaJI	CCNNGG	5 cut(s)	74, 87, 231, 250, 527
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 196, 625
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	610
BseBI	CCWGG	3 cut(s)	197, 455, 529
BseDI	CCNNGG	5 cut(s)	74, 87, 231, 250, 527
BseGI	GGATG	2 cut(s)	227, 517
BseLI	CCNNNNNNNGG	3 cut(s)	76, 196, 625
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	2 cut(s)	104, 107
BseXI	GCAGC	1 cut(s)	455
BshFI	GGCC	2 cut(s)	170, 200
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	3 cut(s)	57, 99, 108
BsiSI	CCGG	4 cut(s)	28, 311, 324, 363
BslI	CCNNNNNNNGG	3 cut(s)	76, 196, 625
BsmAI	GTCTC	2 cut(s)	309, 618
BsmBI	CGTCTC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	170, 200
Bsp1286I	GDGCHC	3 cut(s)	57, 99, 108
Bsp143I	GATC	2 cut(s)	126, 592
BspACI	CCGC	3 cut(s)	20, 64, 446
BspANI	GGCC	2 cut(s)	170, 200
BspLI	GGNNCC	3 cut(s)	154, 237, 556
BspMI	ACCTGC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	5 cut(s)	74, 87, 231, 250, 527
BssMI	GATC	2 cut(s)	126, 592
BssNI	GRCGYC	2 cut(s)	41, 153
Bst2UI	CCWGG	3 cut(s)	197, 455, 529
Bst4CI	ACNGT	2 cut(s)	75, 262
BstACI	GRCGYC	2 cut(s)	41, 153
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	569
BstC8I	GCNNGC	4 cut(s)	240, 364, 448, 481
BstDSI	CCRYGG	2 cut(s)	74, 250
BstEII	GGTNACC	1 cut(s)	340
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	227, 517
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	3 cut(s)	86, 155, 244
BstKTI	GATC	2 cut(s)	129, 595
BstMAI	GTCTC	2 cut(s)	309, 618
BstMBI	GATC	2 cut(s)	126, 592
BstMWI	GCNNNNNNNGC	7 cut(s)	103, 159, 372, 485, 494, 503, 544
BstNI	CCWGG	3 cut(s)	197, 455, 529
BstNSI	RCATGY	1 cut(s)	551
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	5 cut(s)	195, 310, 322, 453, 527
BstSNI	TACGTA	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	455
BstXI	CCANNNNNNTGG	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	170, 200
BtgI	CCRYGG	2 cut(s)	74, 250
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	227, 517
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	478, 483, 588
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	4 cut(s)	240, 364, 448, 481
CfoI	GCGC	3 cut(s)	86, 155, 244
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	2 cut(s)	49, 485
Csp6I	GTAC	4 cut(s)	15, 31, 320, 532
CviAII	CATG	2 cut(s)	287, 548
CviJI	RGCY	8 cut(s)	97, 106, 170, 200, 238, 362, 411, 450
CviKI_1	RGCY	8 cut(s)	97, 106, 170, 200, 238, 362, 411, 450
CviQI	GTAC	4 cut(s)	15, 31, 320, 532
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	2 cut(s)	128, 594
DpnII	GATC	2 cut(s)	126, 592
DraIII	CACNNNGTG	2 cut(s)	141, 394
Ecl136II	GAGCTC	2 cut(s)	97, 106
Eco105I	TACGTA	1 cut(s)	569
Eco147I	AGGCCT	1 cut(s)	170
Eco24I	GRGCYC	2 cut(s)	99, 108
Eco47I	GGWCC	1 cut(s)	247
Eco53kI	GAGCTC	2 cut(s)	97, 106
Eco91I	GGTNACC	1 cut(s)	340
EcoICRI	GAGCTC	2 cut(s)	97, 106
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoO65I	GGTNACC	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	195, 453, 527
EcoT38I	GRGCYC	2 cut(s)	99, 108
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	2 cut(s)	290, 551
FaiI	YATR	7 cut(s)	203, 209, 222, 288, 494, 524, 549
FatI	CATG	2 cut(s)	286, 547
FauI	CCCGC	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	20, 444
FokI	GGATG	2 cut(s)	214, 524
FriOI	GRGCYC	2 cut(s)	99, 108
Fsp4HI	GCNGC	2 cut(s)	20, 444
FspI	TGCGCA	1 cut(s)	243
GlaI	GCGC	3 cut(s)	85, 154, 243
GluI	GCNGC	2 cut(s)	20, 444
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	170, 200
HapII	CCGG	4 cut(s)	28, 311, 324, 363
HgaI	GACGC	2 cut(s)	49, 485
HhaI	GCGC	3 cut(s)	86, 155, 244
Hin1I	GRCGYC	2 cut(s)	41, 153
Hin1II	CATG	2 cut(s)	290, 551
Hin6I	GCGC	3 cut(s)	84, 153, 242
HinP1I	GCGC	3 cut(s)	84, 153, 242
HincII	GTYRAC	3 cut(s)	6, 133, 298
HindII	GTYRAC	3 cut(s)	6, 133, 298
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	4 cut(s)	28, 311, 324, 363
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	6 cut(s)	6, 33, 133, 265, 298, 418
Hpy188I	TCNGA	2 cut(s)	235, 597
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	6 cut(s)	6, 33, 133, 265, 298, 418
Hpy99I	CGWCG	2 cut(s)	49, 179
HpyAV	CCTTC	2 cut(s)	43, 181
HpyCH4III	ACNGT	2 cut(s)	75, 262
HpyCH4IV	ACGT	2 cut(s)	318, 568
HpyCH4V	TGCA	2 cut(s)	111, 488
HpyF10VI	GCNNNNNNNGC	7 cut(s)	103, 159, 372, 485, 494, 503, 544
HpySE526I	ACGT	2 cut(s)	318, 568
Hsp92I	GRCGYC	2 cut(s)	41, 153
Hsp92II	CATG	2 cut(s)	290, 551
HspAI	GCGC	3 cut(s)	84, 153, 242
KasI	GGCGCC	1 cut(s)	152
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	126, 592
LmnI	GCTCC	3 cut(s)	60, 94, 235
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	497
MaeII	ACGT	2 cut(s)	318, 568
MaeIII	GTNAC	2 cut(s)	340, 473
MalI	GATC	2 cut(s)	128, 594
MboI	GATC	2 cut(s)	126, 592
MboII	GAAGA	1 cut(s)	528
MhlI	GDGCHC	3 cut(s)	57, 99, 108
MluCI	AATT	2 cut(s)	179, 291
Mly113I	GGCGCC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	5 cut(s)	71, 82, 85, 241, 343
MroNI	GCCGGC	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	4 cut(s)	28, 311, 324, 363
MspR9I	CCNGG	5 cut(s)	197, 312, 324, 455, 529
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	3 cut(s)	197, 455, 529
MwoI	GCNNNNNNNGC	7 cut(s)	103, 159, 372, 485, 494, 503, 544
NaeI	GCCGGC	1 cut(s)	364
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	2 cut(s)	312, 324
NdeII	GATC	2 cut(s)	126, 592
NgoMIV	GCCGGC	1 cut(s)	362
NlaIII	CATG	2 cut(s)	290, 551
NlaIV	GGNNCC	3 cut(s)	154, 237, 556
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	473
NsbI	TGCGCA	1 cut(s)	243
NspI	RCATGY	1 cut(s)	551
PceI	AGGCCT	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 126
PctI	GAATGC	1 cut(s)	508
PdiI	GCCGGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	463
PflFI	GACNNNGTC	1 cut(s)	43
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	21, 445
PluTI	GGCGCC	1 cut(s)	156
Ppu21I	YACGTR	1 cut(s)	569
Psp124BI	GAGCTC	2 cut(s)	99, 108
Psp6I	CCWGG	3 cut(s)	195, 453, 527
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	3 cut(s)	195, 453, 527
PspN4I	GGNNCC	3 cut(s)	154, 237, 556
PspPI	GGNCC	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	43
RsaI	GTAC	4 cut(s)	16, 32, 321, 533
RsaNI	GTAC	4 cut(s)	15, 31, 320, 532
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	2 cut(s)	99, 108
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	20, 444
Sau3AI	GATC	2 cut(s)	126, 592
Sau96I	GGNCC	1 cut(s)	247
ScrFI	CCNGG	5 cut(s)	197, 312, 324, 455, 529
SduI	GDGCHC	3 cut(s)	57, 99, 108
SfaNI	GCATC	1 cut(s)	497
SfoI	GGCGCC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	206
SnaBI	TACGTA	1 cut(s)	569
Sse9I	AATT	2 cut(s)	179, 291
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	3 cut(s)	20, 64, 446
SspDI	GGCGCC	1 cut(s)	152
SstI	GAGCTC	2 cut(s)	99, 108
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	5 cut(s)	195, 310, 322, 453, 527
TaaI	ACNGT	2 cut(s)	75, 262
TaiI	ACGT	2 cut(s)	321, 571
TaqI	TCGA	4 cut(s)	5, 47, 102, 177
TasI	AATT	2 cut(s)	179, 291
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	463
TscAI	CASTG	3 cut(s)	478, 490, 595
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	216, 303
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	3 cut(s)	478, 490, 595
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	247
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.