Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001970.1

Orthogroup ID

OG0004917

Physical Location & Seq

Genomic Coordinates Forward (+)

91252 .. 92013

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001970.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 239 bp

atgtcgacctcggggacaccgcagttcaggtacacgcagacgccgtcgaaggtgctccacctccgcaatctcccctgggagtgcgccgaggaggagctcatcgagctctgcaagcattttgggaagatcgtcaataccaagtgcaacgtcggcgccaatcgcaaccaggccttcgtcgaattcgcagacctaaaccaggccataaacatggtttcatattatgcttcatcgtcagagcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

80

Amino Acids

9.06

Weight (kDa)

6.05

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01150 AT3G01150 AT3G01150 AT3G01150
fragaria_vesca	FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200 FvH4_6g48200
malus_domestica	MD00G1125500.v1.1 MD00G1167800.v1.1 MD09G1053000.v1.1
prunus_persica	Prupe.3G265700_v2.0.a1 Prupe.3G265700_v2.0.a1
pyrus_communis	pycom111g04420 pycom17g04840
rosa_chinensis	RchiOBHm_Chr2g0167691
rosa_laevigata	RLG00000021746
rosa_multiflora	Rmu_sc0001970.1_g000017 Rmu_sc0002143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083330
rosa_rugosa	Rorug02G0531300 Rorug02G0531400
rosa_samantha	Rh2AG600300 Rh2BG610800 Rh2CG581200 Rh2DG623500
rosa_wichuraiana	Rw2G049830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	20, 64
AcsI	RAATTY	1 cut(s)	179
AcyI	GRCGYC	2 cut(s)	41, 153
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	196
AjnI	CCWGG	3 cut(s)	74, 165, 195
AluBI	AGCT	2 cut(s)	97, 106
AluI	AGCT	2 cut(s)	97, 106
Alw21I	GWGCWC	3 cut(s)	57, 99, 108
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	2 cut(s)	168, 198
ApoI	RAATTY	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	86, 155
AvaI	CYCGRG	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	99, 108
Bbv12I	GWGCWC	3 cut(s)	57, 99, 108
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	3 cut(s)	76, 167, 197
BfoI	RGCGCY	1 cut(s)	156
Bme1390I	CCNGG	3 cut(s)	76, 167, 197
BmeT110I	CYCGRG	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	3 cut(s)	76, 167, 197
BsaHI	GRCGYC	2 cut(s)	41, 153
BsaJI	CCNNGG	4 cut(s)	9, 74, 75, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	76, 167, 197
BseDI	CCNNGG	4 cut(s)	9, 74, 75, 87
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	104, 107
BshFI	GGCC	2 cut(s)	170, 200
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	3 cut(s)	57, 99, 108
BsiHKCI	CYCGRG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	170, 200
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	3 cut(s)	57, 99, 108
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	20, 64
BspANI	GGCC	2 cut(s)	170, 200
BspLI	GGNNCC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	152
BssECI	CCNNGG	4 cut(s)	9, 74, 75, 87
BssMI	GATC	1 cut(s)	126
BssNI	GRCGYC	2 cut(s)	41, 153
Bst2UI	CCWGG	3 cut(s)	76, 167, 197
BstACI	GRCGYC	2 cut(s)	41, 153
BstC8I	GCNNGC	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	86, 155
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 112, 150, 159
BstNI	CCWGG	3 cut(s)	76, 167, 197
BstSCI	CCNGG	3 cut(s)	74, 165, 195
BstXI	CCANNNNNNTGG	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	170, 200
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	2 cut(s)	86, 155
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	5 cut(s)	97, 106, 170, 200, 238
CviKI_1	RGCY	5 cut(s)	97, 106, 170, 200, 238
CviQI	GTAC	1 cut(s)	31
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Ecl136II	GAGCTC	2 cut(s)	97, 106
Eco147I	AGGCCT	1 cut(s)	170
Eco24I	GRGCYC	2 cut(s)	99, 108
Eco53kI	GAGCTC	2 cut(s)	97, 106
Eco88I	CYCGRG	1 cut(s)	10
EcoICRI	GAGCTC	2 cut(s)	97, 106
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	74, 165, 195
EcoT38I	GRGCYC	2 cut(s)	99, 108
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
FaeI	CATG	1 cut(s)	211
FaiI	YATR	4 cut(s)	203, 209, 217, 222
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	5
FriOI	GRGCYC	2 cut(s)	99, 108
GlaI	GCGC	2 cut(s)	85, 154
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	170, 200
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	86, 155
Hin1I	GRCGYC	2 cut(s)	41, 153
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	2 cut(s)	84, 153
HinP1I	GCGC	2 cut(s)	84, 153
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	6, 33
Hpy188I	TCNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	6, 33
Hpy99I	CGWCG	3 cut(s)	49, 152, 179
HpyAV	CCTTC	2 cut(s)	43, 181
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	111, 144
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 112, 150, 159
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	41, 153
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	2 cut(s)	84, 153
KasI	GGCGCC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	2 cut(s)	60, 94
LpnPI	CCDG	7 cut(s)	13, 61, 88, 152, 179, 182, 209
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	1 cut(s)	136
MhlI	GDGCHC	3 cut(s)	57, 99, 108
MluCI	AATT	1 cut(s)	179
Mly113I	GGCGCC	1 cut(s)	153
MnlI	CCTC	4 cut(s)	19, 71, 82, 85
MslI	CAYNNNNRTG	1 cut(s)	206
MspR9I	CCNGG	3 cut(s)	76, 167, 197
MvaI	CCWGG	3 cut(s)	76, 167, 197
MwoI	GCNNNNNNNGC	4 cut(s)	103, 112, 150, 159
NarI	GGCGCC	1 cut(s)	153
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	112
PasI	CCCWGGG	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	43
PluTI	GGCGCC	1 cut(s)	156
Psp124BI	GAGCTC	2 cut(s)	99, 108
Psp6I	CCWGG	3 cut(s)	74, 165, 195
PspGI	CCWGG	3 cut(s)	74, 165, 195
PspN4I	GGNNCC	1 cut(s)	154
PsyI	GACNNNGTC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	2 cut(s)	99, 108
SalI	GTCGAC	1 cut(s)	4
Sau3AI	GATC	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	76, 167, 197
SduI	GDGCHC	3 cut(s)	57, 99, 108
SetI	ASST	8 cut(s)	11, 32, 54, 63, 99, 108, 150, 192
SfoI	GGCGCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	179
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	2 cut(s)	20, 64
SspDI	GGCGCC	1 cut(s)	152
SstI	GAGCTC	2 cut(s)	99, 108
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	3 cut(s)	74, 165, 195
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	4 cut(s)	5, 47, 102, 177
TasI	AATT	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	204, 216
Tth111I	GACNNNGTC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.