AT3G01360

Family of unknown function (DUF716)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008673
Physical Location & Seq
Reverse (-)
136399 .. 138799
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01360.2

Sequence Viewer

Length: 960 bp
ATGGGTATATTAAGTTACGCCGTCGCCGGCGGTGGATTTGCAGTAATCGGCGCGTGGGAGTCACTGGACTCATCGAACCTGGATCCGAATTCATCTTCTGGTACTGCTGATTCATCTTCCCCTATGGCTCAGATCAGAGCTTCGCCGCCAAAATCTGTTGGATCATCTTCCATCCCCGTAGCTTTGCTTTCGTCTCTGTTTATTGCGAACTCGTTTTTCTCCTTCTTCAGCTCAATCGGATCTCGCGATCGGGTCGGGTCAATGATCCAGTTACAGATCGTGGCAGTGGCAGTACTATTCCTATATTACGCCATTCTAACATATCTGGTCAACTCCAAAAACGCTGTCTTTGTTGCACTTCCGTCTTCGATTACAACTTTATTGCTTCTCTTTGGCTTCATTGAGGAGTTCTTAATGTTCTACCTGCAAAAGAAAGATGTTTCTGGAATCGAGAATCGTTATTACGATCTCATGCTCGTGCCCATTGCCATCTGCGTCTTCTCCACGGTTTTTGAGCTCAAATCCGACTCTAGCACGCATCGGTTTGCGAAATTAGGTCGTGGGATCGGTCTGATTCTGCAAGGAACATGGTTTCTGCAAATGGGTGTATCGTTTTTTACCGGTTTGATCACTAATAACTGTACGTTTCACGAGAAGAGCAGAGGCAATTTCACGATCAAGTGCAAAGGACACGGTGATTATCACCGAGCAAAAGCTATAGCTACTCTTCAATTTAACTGTCATTTGGCTCTAATGGTAGTTGTGGCTACTGGTTTGTTCTCTGTCATTGCTAACAAGAATGGTTATCTCCGTCAAGATCATTCTAAATATCGACCTCTCGGAGCTGAGTTGGAGAATTTAAGTACTTTCACACTTGACTCTGATGAAGAAGACGAGGTTCGAGAAGAGAGCAACGTAGCTAAAGAAGTTGGTCTCAATGGAAACAGCTCACATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716

Protein Analysis

319

Amino Acids

34.76

Weight (kDa)

6.17

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF716 PF04819 123 - 260 1.9e-38 Family of unknown function (DUF716)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 432
AccII CGCG 2 cut(s) 53, 246
AciI CCGC 2 cut(s) 30, 146
AclWI GGATC 6 cut(s) 77, 90, 169, 247, 259, 572
AcsI RAATTY 2 cut(s) 88, 856
AcuI CTGAAG 1 cut(s) 211
AfaI GTAC 4 cut(s) 103, 294, 643, 865
AgeI ACCGGT 1 cut(s) 620
AgsI TTSAA 1 cut(s) 731
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 9 cut(s) 140, 182, 231, 517, 716, 722, 845, 920, 948
AluI AGCT 9 cut(s) 140, 182, 231, 517, 716, 722, 845, 920, 948
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 2 cut(s) 198, 938
AlwI GGATC 6 cut(s) 77, 90, 169, 247, 259, 572
ApoI RAATTY 2 cut(s) 88, 856
ArsI GACNNNNNNTTYG 2 cut(s) 330, 362
AsiGI ACCGGT 1 cut(s) 620
AspLEI GCGC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 695, 707
BaeGI GKGCMC 1 cut(s) 483
BamHI GGATCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 519
BauI CACGAG 2 cut(s) 476, 650
BbsI GAAGAC 3 cut(s) 357, 490, 897
Bbv12I GWGCWC 1 cut(s) 519
BccI CCATC 2 cut(s) 179, 497
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 627
BcoDI GTCTC 2 cut(s) 198, 938
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 717
BfuAI ACCTGC 1 cut(s) 432
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmcAI AGTACT 2 cut(s) 294, 865
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 3 cut(s) 357, 490, 897
BsaI GGTCTC 1 cut(s) 938
BsaJI CCNNGG 1 cut(s) 504
BsaWI WCCGGW 1 cut(s) 620
Bse118I RCCGGY 2 cut(s) 26, 620
Bse1I ACTGG 3 cut(s) 69, 268, 775
Bse3DI GCAATG 2 cut(s) 483, 786
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 171
BseMI GCAATG 2 cut(s) 483, 786
BseMII CTCAG 2 cut(s) 143, 837
BseNI ACTGG 3 cut(s) 69, 268, 775
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 483
Bsh1236I CGCG 2 cut(s) 53, 246
Bsh1285I CGRYCG 1 cut(s) 250
BshTI ACCGGT 1 cut(s) 620
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 519
BsiSI CCGG 2 cut(s) 27, 621
BsmAI GTCTC 2 cut(s) 198, 938
BsmBI CGTCTC 1 cut(s) 198
Bso31I GGTCTC 1 cut(s) 938
Bsp1286I GDGCHC 2 cut(s) 483, 519
Bsp68I TCGCGA 1 cut(s) 246
BspACI CCGC 2 cut(s) 30, 146
BspCNI CTCAG 2 cut(s) 142, 838
BspFNI CGCG 2 cut(s) 53, 246
BspLI GGNNCC 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 432
BspPI GGATC 6 cut(s) 77, 90, 169, 247, 259, 572
BspQI GCTCTTC 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 938
BsrDI GCAATG 2 cut(s) 483, 786
BsrFI RCCGGY 2 cut(s) 26, 620
BsrI ACTGG 3 cut(s) 69, 268, 775
BssAI RCCGGY 2 cut(s) 26, 620
BssECI CCNNGG 1 cut(s) 504
BssSI CACGAG 2 cut(s) 476, 650
Bst2BI CACGAG 2 cut(s) 476, 650
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 4 cut(s) 508, 641, 695, 740
Bst6I CTCTTC 3 cut(s) 650, 732, 900
BstC8I GCNNGC 2 cut(s) 28, 536
BstDEI CTNAG 2 cut(s) 129, 846
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 2 cut(s) 53, 246
BstHHI GCGC 1 cut(s) 53
BstMAI GTCTC 2 cut(s) 198, 938
BstMCI CGRYCG 1 cut(s) 250
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 717
BstSLI GKGCMC 1 cut(s) 483
BstUI CGCG 2 cut(s) 53, 246
BstV2I GAAGAC 3 cut(s) 357, 490, 897
BstX2I RGATCY 2 cut(s) 82, 239
BstYI RGATCY 2 cut(s) 82, 239
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 1 cut(s) 171
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 62, 291
BtuMI TCGCGA 1 cut(s) 246
BveI ACCTGC 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 28, 536
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 2 cut(s) 26, 620
CseI GACGC 1 cut(s) 484
Csp6I GTAC 4 cut(s) 102, 293, 642, 864
CspAI ACCGGT 1 cut(s) 620
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 3 cut(s) 472, 588, 953
CviQI GTAC 4 cut(s) 102, 293, 642, 864
DdeI CTNAG 2 cut(s) 129, 846
Eam1104I CTCTTC 3 cut(s) 650, 732, 900
EarI CTCTTC 3 cut(s) 650, 732, 900
Ecl136II GAGCTC 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 519
Eco31I GGTCTC 1 cut(s) 938
Eco53kI GAGCTC 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 519
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 3 cut(s) 475, 591, 956
FaiI YATR 8 cut(s) 8, 125, 304, 322, 473, 589, 719, 954
FatI CATG 3 cut(s) 471, 587, 952
FbaI TGATCA 1 cut(s) 627
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 1 cut(s) 531
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 146
HapII CCGG 2 cut(s) 27, 621
HgaI GACGC 1 cut(s) 484
HhaI GCGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 475, 591, 956
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 8 cut(s) 59, 68, 110, 447, 454, 527, 574, 878
HpaII CCGG 2 cut(s) 27, 621
HphI GGTGA 2 cut(s) 695, 707
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 8 cut(s) 87, 132, 137, 239, 526, 573, 842, 883
Hpy188III TCNNGA 7 cut(s) 245, 444, 451, 650, 673, 815, 902
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 4 cut(s) 508, 641, 695, 740
HpyCH4IV ACGT 2 cut(s) 644, 915
HpyCH4V TGCA 6 cut(s) 41, 356, 427, 580, 598, 684
HpyF3I CTNAG 2 cut(s) 129, 846
HpySE526I ACGT 2 cut(s) 644, 915
Hsp92II CATG 3 cut(s) 475, 591, 956
HspAI GCGC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 627
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 1 cut(s) 842
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 531
MaeII ACGT 2 cut(s) 644, 915
MaeIII GTNAC 3 cut(s) 14, 60, 270
MflI RGATCY 2 cut(s) 82, 239
MhlI GDGCHC 2 cut(s) 483, 519
MluCI AATT 5 cut(s) 88, 551, 667, 731, 856
MlyI GAGTC 4 cut(s) 62, 68, 521, 872
MmeI TCCRAC 3 cut(s) 139, 549, 831
MnlI CCTC 4 cut(s) 397, 656, 846, 889
MreI CGCCGGCG 1 cut(s) 26
MroNI GCCGGC 1 cut(s) 26
MseI TTAA 5 cut(s) 11, 413, 735, 860, 958
MslI CAYNNNNRTG 1 cut(s) 476
MspI CCGG 2 cut(s) 27, 621
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 2 cut(s) 53, 246
NaeI GCCGGC 1 cut(s) 28
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 3 cut(s) 475, 591, 956
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 60
NruI TCGCGA 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 650
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 4 cut(s) 110, 447, 454, 574
PinAI ACCGGT 1 cut(s) 620
PkrI GCNGC 1 cut(s) 147
Ple19I CGATCG 1 cut(s) 250
PleI GAGTC 4 cut(s) 62, 67, 521, 872
PpsI GAGTC 4 cut(s) 62, 67, 521, 872
Psp124BI GAGCTC 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 84
PsuI RGATCY 2 cut(s) 82, 239
PvuI CGATCG 1 cut(s) 250
RruI TCGCGA 1 cut(s) 246
RsaI GTAC 4 cut(s) 103, 294, 643, 865
RsaNI GTAC 4 cut(s) 102, 293, 642, 864
RseI CAYNNNNRTG 1 cut(s) 476
SacI GAGCTC 1 cut(s) 519
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 5 cut(s) 11, 413, 735, 860, 958
SatI GCNGC 1 cut(s) 146
ScaI AGTACT 2 cut(s) 294, 865
SchI GAGTC 4 cut(s) 62, 68, 521, 872
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 2 cut(s) 483, 519
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 1 cut(s) 717
SgrAI CRCCGGYG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 476
Sse9I AATT 5 cut(s) 88, 551, 667, 731, 856
SsiI CCGC 2 cut(s) 30, 146
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 4 cut(s) 508, 641, 695, 740
TaiI ACGT 2 cut(s) 647, 918
TaqI TCGA 5 cut(s) 74, 368, 450, 832, 901
TaqII GACCGA 1 cut(s) 557
TasI AATT 5 cut(s) 88, 551, 667, 731, 856
TatI WGTACW 2 cut(s) 292, 863
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 4 cut(s) 110, 447, 454, 574
Tru1I TTAA 5 cut(s) 11, 413, 735, 860, 958
Tru9I TTAA 5 cut(s) 11, 413, 735, 860, 958
TscAI CASTG 2 cut(s) 69, 291
TseFI GTSAC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 4 cut(s) 81, 102, 388, 900
TspGWI ACGGA 2 cut(s) 351, 800
TspRI CASTG 2 cut(s) 69, 291
XapI RAATTY 2 cut(s) 88, 856
XspI CTAG 1 cut(s) 531
ZrmI AGTACT 2 cut(s) 294, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.