Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008673

Physical Location & Seq

Genomic Coordinates Forward (+)

4584854 .. 4585819

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGATTCTTCACCTTCGCAGCCGCAGGCGGCGGCCTGATTCTGATGGGCACATTCGAAGCCATCTCCTCCTCCACCGTCGACCCATCTCCACTGTCCACTCATCCCCAATCGAAACCGCAAACGACCCAGTCCAAATCGTCGTTCATCTACTTCCTCCTCGCATCCCTTCTCTCCTTCCTCTTCATTCTCAACTCGTTGATTTCCTTCTTCGACGCCTTAAACTCAAACGATCGGGTCGGGTCGGCCCAGCAGCTCCAGGTCATCGCGATCGCCGCCCTCTTCTTCCTCTACTCCATCACCGGCCTCCTGGTAAACTTCACCAACTCATCTTTCCCTTCTTCGCTGCTCAATTTGATCGTTCTCTTCGGTTTCGTTGAAGAATTCATGTTCTTTTATCTTCAAAGAAAAGACACTGCTGGAATCGAGAATCGATACTTTGATCTGTTGCTGGTGCCGATTTTAGTCTGTGTGTTCTCCACAGTGCTTGAATTGCACAACCCTAAATCGATTTTCCCCAAATTGGCTCGCGGAGTTGGCTTGGTTCTACAAGGACTGTGGTTCTTGCAAATGGGTCTTTCGATTTATACGCATTGGATGGCTCATGGGTGCTCATTGAAAGAAAAGAGTAGAGGGAATTACACGGTTAAGTGTAAGGGGCACCCTGAATATCACAGGGCTAGAGCTATTGCTACGCTTCAGTTTAACTGTCATTTGGCTCTGATAGTGGTTTTGGTGGTGGGGGTGTATTCAATTGTGGCGAGGAAAACAAGAGTTGTTGCTGATTTCTCGAGCTATAAGCCGCTTGGCGCGGAAATGCAGCGTCAGATTGATAGTCAGGGGCAGTTTACTTTGGATTCGGAGGATGATGGTGATGAGGAGGTTAGAGAAGAGGGCAATGTGGTTATGAAGAAGGCCGGCGGGGAAGTGGAGTTGGGTGTGAATGGTAATGGGACTTATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

321

Amino Acids

35.45

Weight (kDa)

6.66

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	115 - 250	1.2e-44	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01360 AT3G01360
fragaria_vesca	FvH4_6g50020
malus_domestica	MD09G1040200.v1.1 MD17G1040800.v1.1
prunus_persica	Prupe.3G278200_v2.0.a1
pyrus_communis	pycom17g03660
rosa_chinensis	RchiOBHm_Chr2g0170271
rosa_laevigata	RLG00000021934 RLG00000021942
rosa_multiflora	Rmu_sc0001605.1_g000004 Rmu_sc0012468.1_g000027 Rmu_sc0012468.1_g000028
rosa_roxburghii	Rroxscaffold_2G00081480 Rroxscaffold_2G00081520
rosa_rugosa	Rorug02G0547600
rosa_samantha	Rh2AG618900 Rh2AG619200 Rh2BG630100 Rh2CG600200 Rh2DG643000
rosa_wichuraiana	Rw2G051250 Rw2G051290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	960
AccB1I	GGYRCC	2 cut(s)	454, 660
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	3 cut(s)	269, 531, 812
AciI	CCGC	9 cut(s)	24, 30, 33, 119, 276, 531, 803, 812, 921
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	683
AcyI	GRCGYC	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	5 cut(s)	380, 404, 491, 619, 753
AjnI	CCWGG	2 cut(s)	258, 309
AjuI	GAANNNNNNNTTGG	4 cut(s)	128, 160, 317, 349
AluBI	AGCT	3 cut(s)	256, 686, 795
AluI	AGCT	3 cut(s)	256, 686, 795
Alw21I	GWGCWC	1 cut(s)	614
Ama87I	CYCGRG	1 cut(s)	790
AoxI	GGCC	4 cut(s)	34, 246, 304, 915
ApeKI	GCWGC	4 cut(s)	20, 253, 346, 820
ApoI	RAATTY	1 cut(s)	383
AsiSI	GCGATCGC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	812
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	4 cut(s)	4, 292, 313, 884
AsuII	TTCGAA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	790
BaeGI	GKGCMC	2 cut(s)	53, 663
BanI	GGYRCC	2 cut(s)	454, 660
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	4 cut(s)	32, 265, 333, 832
BccI	CCATC	6 cut(s)	40, 71, 94, 305, 592, 863
BciT130I	CCWGG	2 cut(s)	260, 311
BfaI	CTAG	1 cut(s)	681
BisI	GCNGC	9 cut(s)	21, 24, 31, 34, 254, 276, 347, 803, 821
BlsI	GCNGC	9 cut(s)	22, 25, 32, 35, 255, 277, 348, 804, 822
Bme1390I	CCNGG	2 cut(s)	260, 311
BmeT110I	CYCGRG	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	2 cut(s)	456, 662
BmrFI	CCNGG	2 cut(s)	260, 311
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	57
Bsa29I	ATCGAT	2 cut(s)	433, 509
BsaHI	GRCGYC	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse118I	RCCGGY	2 cut(s)	302, 917
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	904
BseBI	CCWGG	2 cut(s)	260, 311
BseCI	ATCGAT	2 cut(s)	433, 509
BseGI	GGATG	4 cut(s)	103, 164, 603, 871
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	904
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	4 cut(s)	58, 61, 149, 893
BseSI	GKGCMC	2 cut(s)	53, 663
BseXI	GCAGC	4 cut(s)	32, 265, 333, 832
BseYI	CCCAGC	1 cut(s)	249
Bsh1236I	CGCG	3 cut(s)	269, 531, 812
Bsh1285I	CGRYCG	2 cut(s)	235, 273
BshFI	GGCC	4 cut(s)	36, 248, 306, 917
BshNI	GGYRCC	2 cut(s)	454, 660
BshVI	ATCGAT	2 cut(s)	433, 509
BsiEI	CGRYCG	2 cut(s)	235, 273
BsiHKAI	GWGCWC	1 cut(s)	614
BsiHKCI	CYCGRG	1 cut(s)	790
BsiSI	CCGG	2 cut(s)	303, 918
BslI	CCNNNNNNNGG	1 cut(s)	523
BsnI	GGCC	4 cut(s)	36, 248, 306, 917
BsoBI	CYCGRG	1 cut(s)	790
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	3 cut(s)	53, 614, 663
Bsp143I	GATC	4 cut(s)	232, 270, 357, 442
Bsp68I	TCGCGA	1 cut(s)	269
BspACI	CCGC	9 cut(s)	24, 30, 33, 119, 276, 531, 803, 812, 921
BspANI	GGCC	4 cut(s)	36, 248, 306, 917
BspDI	ATCGAT	2 cut(s)	433, 509
BspFNI	CGCG	3 cut(s)	269, 531, 812
BspLI	GGNNCC	2 cut(s)	456, 662
BspT104I	TTCGAA	1 cut(s)	57
BspT107I	GGYRCC	2 cut(s)	454, 660
BsrDI	GCAATG	1 cut(s)	904
BsrFI	RCCGGY	2 cut(s)	302, 917
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	2 cut(s)	302, 917
BssMI	GATC	4 cut(s)	232, 270, 357, 442
BssNI	GRCGYC	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	260, 311
Bst4CI	ACNGT	6 cut(s)	79, 96, 484, 558, 646, 710
Bst6I	CTCTTC	4 cut(s)	188, 287, 371, 885
BstACI	GRCGYC	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	28, 529, 919
BstF5I	GGATG	4 cut(s)	103, 164, 603, 871
BstFNI	CGCG	3 cut(s)	269, 531, 812
BstHHI	GCGC	1 cut(s)	812
BstKTI	GATC	4 cut(s)	235, 273, 360, 445
BstMBI	GATC	4 cut(s)	232, 270, 357, 442
BstMCI	CGRYCG	2 cut(s)	235, 273
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 493, 537
BstNI	CCWGG	2 cut(s)	260, 311
BstSCI	CCNGG	2 cut(s)	258, 309
BstSLI	GKGCMC	2 cut(s)	53, 663
BstUI	CGCG	3 cut(s)	269, 531, 812
BstV1I	GCAGC	4 cut(s)	32, 265, 333, 832
Bsu15I	ATCGAT	2 cut(s)	433, 509
BsuRI	GGCC	4 cut(s)	36, 248, 306, 917
BsuTUI	ATCGAT	2 cut(s)	433, 509
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	4 cut(s)	103, 164, 603, 871
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	3 cut(s)	92, 414, 489
BtuMI	TCGCGA	1 cut(s)	269
Cac8I	GCNNGC	3 cut(s)	28, 529, 919
CfoI	GCGC	1 cut(s)	812
Cfr10I	RCCGGY	2 cut(s)	302, 917
Cfr13I	GGNCC	1 cut(s)	247
ClaI	ATCGAT	2 cut(s)	433, 509
CseI	GACGC	2 cut(s)	224, 812
CspCI	CAANNNNNGTGG	4 cut(s)	469, 504, 539, 574
CviAII	CATG	2 cut(s)	388, 605
DpnI	GATC	4 cut(s)	234, 272, 359, 444
DpnII	GATC	4 cut(s)	232, 270, 357, 442
Eam1104I	CTCTTC	4 cut(s)	188, 287, 371, 885
EarI	CTCTTC	4 cut(s)	188, 287, 371, 885
Eco57I	CTGAAG	1 cut(s)	683
Eco88I	CYCGRG	1 cut(s)	790
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	258, 309
FaeI	CATG	2 cut(s)	391, 608
FaiI	YATR	6 cut(s)	389, 588, 606, 798, 908, 960
FatI	CATG	2 cut(s)	387, 604
FauI	CCCGC	1 cut(s)	914
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	9 cut(s)	21, 24, 31, 34, 254, 276, 347, 803, 821
FokI	GGATG	4 cut(s)	90, 151, 610, 878
Fsp4HI	GCNGC	9 cut(s)	21, 24, 31, 34, 254, 276, 347, 803, 821
FspBI	CTAG	1 cut(s)	681
GlaI	GCGC	1 cut(s)	811
GluI	GCNGC	9 cut(s)	21, 24, 31, 34, 254, 276, 347, 803, 821
GsaI	CCCAGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	4 cut(s)	36, 248, 306, 917
HapII	CCGG	2 cut(s)	303, 918
HgaI	GACGC	2 cut(s)	224, 812
HhaI	GCGC	1 cut(s)	812
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	391, 608
Hin6I	GCGC	1 cut(s)	810
HinP1I	GCGC	1 cut(s)	810
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	5 cut(s)	6, 40, 423, 430, 857
HpaII	CCGG	2 cut(s)	303, 918
HphI	GGTGA	4 cut(s)	4, 292, 313, 884
Hpy166II	GTNNAC	4 cut(s)	82, 99, 316, 849
Hpy188I	TCNGA	4 cut(s)	45, 723, 828, 862
Hpy188III	TCNNGA	3 cut(s)	268, 427, 790
Hpy8I	GTNNAC	4 cut(s)	82, 99, 316, 849
Hpy99I	CGWCG	3 cut(s)	83, 145, 218
HpyAV	CCTTC	6 cut(s)	25, 179, 187, 217, 348, 907
HpyCH4III	ACNGT	6 cut(s)	79, 96, 484, 558, 646, 710
HpyCH4V	TGCA	3 cut(s)	496, 568, 820
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 493, 537
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	391, 608
HspAI	GCGC	1 cut(s)	810
KroI	GCCGGC	1 cut(s)	917
KroNI	GCCGGC	1 cut(s)	919
Kzo9I	GATC	4 cut(s)	232, 270, 357, 442
LmnI	GCTCC	1 cut(s)	261
Lsp1109I	GCAGC	4 cut(s)	32, 265, 333, 832
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	681
MalI	GATC	4 cut(s)	234, 272, 359, 444
MboI	GATC	4 cut(s)	232, 270, 357, 442
MfeI	CAATTG	1 cut(s)	753
MhlI	GDGCHC	3 cut(s)	53, 614, 663
MluCI	AATT	6 cut(s)	352, 383, 491, 521, 637, 753
MroNI	GCCGGC	1 cut(s)	917
MseI	TTAA	3 cut(s)	221, 648, 705
MspI	CCGG	2 cut(s)	303, 918
MspR9I	CCNGG	2 cut(s)	260, 311
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	2 cut(s)	260, 311
MvnI	CGCG	3 cut(s)	269, 531, 812
MwoI	GCNNNNNNNGC	3 cut(s)	275, 493, 537
NaeI	GCCGGC	1 cut(s)	919
NdeII	GATC	4 cut(s)	232, 270, 357, 442
NgoMIV	GCCGGC	1 cut(s)	917
NlaIII	CATG	2 cut(s)	391, 608
NlaIV	GGNNCC	2 cut(s)	456, 662
NruI	TCGCGA	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	790
PdiI	GCCGGC	1 cut(s)	919
PfeI	GAWTC	5 cut(s)	6, 40, 423, 430, 857
PflFI	GACNNNGTC	1 cut(s)	130
PkrI	GCNGC	9 cut(s)	22, 25, 32, 35, 255, 277, 348, 804, 822
Ple19I	CGATCG	2 cut(s)	235, 273
PsiI	TTATAA	1 cut(s)	960
Psp6I	CCWGG	2 cut(s)	258, 309
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	2 cut(s)	258, 309
PspN4I	GGNNCC	2 cut(s)	456, 662
PspPI	GGNCC	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	130
PvuI	CGATCG	2 cut(s)	235, 273
RgaI	GCGATCGC	1 cut(s)	273
RruI	TCGCGA	1 cut(s)	269
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	221, 648, 705
SatI	GCNGC	9 cut(s)	21, 24, 31, 34, 254, 276, 347, 803, 821
Sau3AI	GATC	4 cut(s)	232, 270, 357, 442
Sau96I	GGNCC	1 cut(s)	247
ScrFI	CCNGG	2 cut(s)	260, 311
SduI	GDGCHC	3 cut(s)	53, 614, 663
SetI	ASST	6 cut(s)	17, 258, 264, 688, 797, 885
SfaAI	GCGATCGC	1 cut(s)	273
SfaNI	GCATC	1 cut(s)	173
Sfr274I	CTCGAG	1 cut(s)	790
SfuI	TTCGAA	1 cut(s)	57
SgfI	GCGATCGC	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	790
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
Sse9I	AATT	6 cut(s)	352, 383, 491, 521, 637, 753
SsiI	CCGC	9 cut(s)	24, 30, 33, 119, 276, 531, 803, 812, 921
SspMI	CTAG	1 cut(s)	681
StyD4I	CCNGG	2 cut(s)	258, 309
TaaI	ACNGT	6 cut(s)	79, 96, 484, 558, 646, 710
TaqI	TCGA	9 cut(s)	57, 81, 113, 213, 426, 433, 509, 581, 791
TasI	AATT	6 cut(s)	352, 383, 491, 521, 637, 753
TauI	GCSGC	5 cut(s)	26, 33, 36, 278, 805
TfiI	GAWTC	5 cut(s)	6, 40, 423, 430, 857
Tru1I	TTAA	3 cut(s)	221, 648, 705
Tru9I	TTAA	3 cut(s)	221, 648, 705
TscAI	CASTG	3 cut(s)	99, 421, 489
TseI	GCWGC	4 cut(s)	20, 253, 346, 820
TspDTI	ATGAA	4 cut(s)	136, 175, 376, 923
TspRI	CASTG	3 cut(s)	99, 421, 489
Tth111I	GACNNNGTC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	383
XhoI	CTCGAG	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.