Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008673

Physical Location & Seq

Genomic Coordinates Reverse (-)

25525216 .. 25526269

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G278200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGGGTTTCTTACTTTTGCAGCAGCAGGCGGCGGCCTTATTCTGATGGGTGCATACGAAGCCATTTCTACCTCAATCCAAATCCCAGACCAAGATTCAACTCCGTCGTCACCTCCATCTTCACAATCCTCAAATTCAAGAACGCAGACGAGCATCCAACCTCGCACGTCGTCGATTTATTATCTCGCTGCCTCTGTCATCTCGTTACTTTTCGTTCTAAATTCTTTGGTTTCATTCTTTGACGCAAACGACGCGAATGACCGAGTCGGCTCAGCCCTCCAATTGCAAGTGATTGCAATTGCCTCGCTCTTCTTGCTCTACGCAATCACGGGTCTCCTGGTAAACTTCACAAATTCCACTATGCCTTGTTCGTTGCTCAGTTTGGTTGGTCTTTTCGCTTTCATTGAAGAATTTTTACTGTTTTACCTTCGAAAAAAAGACAATAGTGGGATTGAAAATCGGTACTTTGATATGTTGCTTGTGCCAATTGCCGTTTGTATATTTTCCACAATGCTTGAATTCAACAACCCAAAATCGAATTACCCTAAATTGGCTCGTGGGGTTGGGTTACTTCTGCAAGGAACTTGGTTTTTGCAAATGGGTATTTCTTTGTACACCAATTTGATAGCTCACGGGTGTTCTTTGCACGAAAAGAGCAGAGGGAATTACACTGTGAAGTGTAAGGGGCACCCTGAATATCACAGGGCTAGAGCCATTGTCACACTTCAGTTCAATTGCCACCTTGCTCTTCTAGTGATTTTGGTTGTGGGAGTGTACTCAATTATTGGTAAGAAAACTGGAGGCAGGGGTGATGTTTCAAGCTATAAGCCCCTTGGCGCCGAGAGGCATCAATTTGATAATCAGAGCCAGTTTACTTTGGATTCTGAAGATGATGATGTTGATGAAGAGATTAAAGAAGAGGGAAACTTGGCAATACAGAAGGCCGGTGAAGTCGAATTGGGGATGAATGGTTATGGTTCTCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

330

Amino Acids

35.98

Weight (kDa)

5.81

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01360 AT3G01360
fragaria_vesca	FvH4_6g50020
malus_domestica	MD09G1040200.v1.1 MD17G1040800.v1.1
prunus_persica	Prupe.3G278200_v2.0.a1
pyrus_communis	pycom17g03660
rosa_chinensis	RchiOBHm_Chr2g0170271
rosa_laevigata	RLG00000021934 RLG00000021942
rosa_multiflora	Rmu_sc0001605.1_g000004 Rmu_sc0012468.1_g000027 Rmu_sc0012468.1_g000028
rosa_roxburghii	Rroxscaffold_2G00081480 Rroxscaffold_2G00081520
rosa_rugosa	Rorug02G0547600
rosa_samantha	Rh2AG618900 Rh2AG619200 Rh2BG630100 Rh2CG600200 Rh2DG643000
rosa_wichuraiana	Rw2G051250 Rw2G051290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	687, 836
AccII	CGCG	1 cut(s)	254
AciI	CCGC	2 cut(s)	30, 33
AcsI	RAATTY	5 cut(s)	133, 220, 352, 410, 518
AcuI	CTGAAG	2 cut(s)	710, 906
AcyI	GRCGYC	1 cut(s)	837
AfaI	GTAC	3 cut(s)	464, 614, 776
AfiI	CCNNNNNNNGG	1 cut(s)	550
AgsI	TTSAA	8 cut(s)	99, 138, 407, 455, 518, 523, 733, 819
AjiI	CACGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	2 cut(s)	629, 822
AluI	AGCT	2 cut(s)	629, 822
Alw26I	GTCTC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	34, 942
ApeKI	GCWGC	3 cut(s)	20, 23, 188
ApoI	RAATTY	5 cut(s)	133, 220, 352, 410, 518
AspLEI	GCGC	1 cut(s)	839
AsuHPI	GGTGA	3 cut(s)	102, 821, 959
AsuII	TTCGAA	1 cut(s)	430
BaeGI	GKGCMC	1 cut(s)	690
BanI	GGYRCC	2 cut(s)	687, 836
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
BauI	CACGAG	1 cut(s)	555
BbvI	GCAGC	3 cut(s)	32, 35, 175
BccI	CCATC	2 cut(s)	40, 124
BceAI	ACGGC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	2 cut(s)	708, 752
BfoI	RGCGCY	1 cut(s)	840
BisI	GCNGC	5 cut(s)	21, 24, 31, 34, 189
BlpI	GCTNAGC	1 cut(s)	271
BlsI	GCNGC	5 cut(s)	22, 25, 32, 35, 190
Bme1390I	CCNGG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	689, 838
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	2 cut(s)	162, 856
BpmI	CTGGAG	1 cut(s)	819
Bpu1102I	GCTNAGC	1 cut(s)	271
Bpu14I	TTCGAA	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	837
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse118I	RCCGGY	1 cut(s)	944
Bse1I	ACTGG	2 cut(s)	802, 868
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	832
BseGI	GGATG	2 cut(s)	153, 969
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMII	CTCAG	2 cut(s)	285, 391
BseNI	ACTGG	2 cut(s)	802, 868
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	3 cut(s)	32, 35, 175
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	36, 944
BshNI	GGYRCC	2 cut(s)	687, 836
BsiSI	CCGG	1 cut(s)	945
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	36, 944
Bso31I	GGTCTC	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp1407I	TGTACA	1 cut(s)	612
Bsp1720I	GCTNAGC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	30, 33
BspANI	GGCC	2 cut(s)	36, 944
BspCNI	CTCAG	2 cut(s)	284, 390
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	689, 838
BspQI	GCTCTTC	2 cut(s)	314, 753
BspT104I	TTCGAA	1 cut(s)	430
BspT107I	GGYRCC	2 cut(s)	687, 836
BspTNI	GGTCTC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	944
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	802, 868
BssAI	RCCGGY	1 cut(s)	944
BssECI	CCNNGG	1 cut(s)	832
BssNI	GRCGYC	1 cut(s)	837
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	832
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	420, 673
Bst6I	CTCTTC	4 cut(s)	314, 753, 900, 912
BstACI	GRCGYC	1 cut(s)	837
BstAUI	TGTACA	1 cut(s)	612
BstBI	TTCGAA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	271, 377
BstF5I	GGATG	2 cut(s)	153, 969
BstFNI	CGCG	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	840
BstHHI	GCGC	1 cut(s)	839
BstMAI	GTCTC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 251, 313
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	3 cut(s)	32, 35, 175
BsuRI	GGCC	2 cut(s)	36, 944
BtrI	CACGTC	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	153, 969
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	839
Cfr10I	RCCGGY	1 cut(s)	944
CseI	GACGC	2 cut(s)	251, 260
Csp6I	GTAC	3 cut(s)	463, 613, 775
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviQI	GTAC	3 cut(s)	463, 613, 775
DdeI	CTNAG	2 cut(s)	271, 377
DinI	GGCGCC	1 cut(s)	838
Eam1104I	CTCTTC	4 cut(s)	314, 753, 900, 912
EarI	CTCTTC	4 cut(s)	314, 753, 900, 912
Eco130I	CCWWGG	1 cut(s)	832
Eco31I	GGTCTC	1 cut(s)	338
Eco57I	CTGAAG	2 cut(s)	710, 906
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	832
EgeI	GGCGCC	1 cut(s)	838
EheI	GGCGCC	1 cut(s)	838
ErhI	CCWWGG	1 cut(s)	832
FaiI	YATR	6 cut(s)	55, 362, 473, 500, 825, 975
Fnu4HI	GCNGC	5 cut(s)	21, 24, 31, 34, 189
FokI	GGATG	2 cut(s)	140, 976
Fsp4HI	GCNGC	5 cut(s)	21, 24, 31, 34, 189
FspBI	CTAG	2 cut(s)	708, 752
GlaI	GCGC	1 cut(s)	838
GluI	GCNGC	5 cut(s)	21, 24, 31, 34, 189
GsuI	CTGGAG	1 cut(s)	819
HaeII	RGCGCY	1 cut(s)	840
HaeIII	GGCC	2 cut(s)	36, 944
HapII	CCGG	1 cut(s)	945
HgaI	GACGC	2 cut(s)	251, 260
HhaI	GCGC	1 cut(s)	839
Hin1I	GRCGYC	1 cut(s)	837
Hin6I	GCGC	1 cut(s)	837
HinP1I	GCGC	1 cut(s)	837
HinfI	GANTC	3 cut(s)	95, 264, 881
HpaII	CCGG	1 cut(s)	945
HphI	GGTGA	3 cut(s)	102, 821, 959
Hpy166II	GTNNAC	4 cut(s)	343, 615, 775, 873
Hpy188I	TCNGA	3 cut(s)	45, 864, 886
Hpy188III	TCNNGA	1 cut(s)	138
Hpy8I	GTNNAC	4 cut(s)	343, 615, 775, 873
Hpy99I	CGWCG	4 cut(s)	109, 172, 175, 254
HpyAV	CCTTC	2 cut(s)	437, 934
HpyCH4III	ACNGT	2 cut(s)	420, 673
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	7 cut(s)	20, 53, 286, 296, 577, 595, 646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 251, 313
HpyF3I	CTNAG	2 cut(s)	271, 377
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	837
HspAI	GCGC	1 cut(s)	837
KasI	GGCGCC	1 cut(s)	836
LguI	GCTCTTC	2 cut(s)	314, 753
Lsp1109I	GCAGC	3 cut(s)	32, 35, 175
LweI	GCATC	2 cut(s)	162, 856
MaeI	CTAG	2 cut(s)	708, 752
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	4 cut(s)	108, 204, 567, 718
MboII	GAAGA	7 cut(s)	111, 301, 419, 740, 899, 917, 929
MfeI	CAATTG	4 cut(s)	281, 297, 486, 733
MhlI	GDGCHC	1 cut(s)	690
Mly113I	GGCGCC	1 cut(s)	837
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	181
MseI	TTAA	1 cut(s)	912
MspI	CCGG	1 cut(s)	945
MspR9I	CCNGG	1 cut(s)	338
MunI	CAATTG	4 cut(s)	281, 297, 486, 733
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	59, 251, 313
NarI	GGCGCC	1 cut(s)	837
NlaIV	GGNNCC	2 cut(s)	689, 838
NmeAIII	GCCGAG	1 cut(s)	865
NmuCI	GTSAC	2 cut(s)	108, 718
NspV	TTCGAA	1 cut(s)	430
PciSI	GCTCTTC	2 cut(s)	314, 753
PfeI	GAWTC	2 cut(s)	95, 881
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	5 cut(s)	22, 25, 32, 35, 190
PleI	GAGTC	1 cut(s)	272
PluTI	GGCGCC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	689, 838
PsyI	GACNNNGTC	1 cut(s)	263
RsaI	GTAC	3 cut(s)	464, 614, 776
RsaNI	GTAC	3 cut(s)	463, 613, 775
SapI	GCTCTTC	2 cut(s)	314, 753
SaqAI	TTAA	1 cut(s)	912
SatI	GCNGC	5 cut(s)	21, 24, 31, 34, 189
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	690
SetI	ASST	8 cut(s)	74, 115, 163, 170, 429, 631, 744, 824
SfaNI	GCATC	2 cut(s)	162, 856
SfoI	GGCGCC	1 cut(s)	838
SfuI	TTCGAA	1 cut(s)	430
SsiI	CCGC	2 cut(s)	30, 33
SspDI	GGCGCC	1 cut(s)	836
SspMI	CTAG	2 cut(s)	708, 752
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	832
TaaI	ACNGT	2 cut(s)	420, 673
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	4 cut(s)	173, 430, 536, 954
TaqII	GACCGA	1 cut(s)	276
TatI	WGTACW	2 cut(s)	612, 774
TauI	GCSGC	2 cut(s)	33, 36
TfiI	GAWTC	2 cut(s)	95, 881
Tru1I	TTAA	1 cut(s)	912
Tru9I	TTAA	1 cut(s)	912
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	2 cut(s)	108, 718
TseI	GCWGC	3 cut(s)	20, 23, 188
Tsp45I	GTSAC	2 cut(s)	108, 718
TspDTI	ATGAA	4 cut(s)	222, 391, 918, 980
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	676
Tth111I	GACNNNGTC	1 cut(s)	263
XapI	RAATTY	5 cut(s)	133, 220, 352, 410, 518
XspI	CTAG	2 cut(s)	708, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.