Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008673

Physical Location & Seq

Genomic Coordinates Reverse (-)

37314157 .. 37317015

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGATTCCTCACCTTCGCTGCCGCAGGCTTCGGCCTCATCCTCATGGGCACATTCGAAGCCATCGCTTCCACCACCACCTCATCTCCACCCTCCAATCTCCCCCAATCCAAACCCCAAACGACGCCGTCCAGATCCTCCTTCATCTACTTCCTCTCCGCTTCCCTCCTCTCCTTCCTCTTCATCCTCAACTCCCTCATCTCCTTCTTCGACGCCGTCAACTCCCACGACCGGGTCGGGTCGGCCCAGCAGCTCCAGGTCGCCGCGATCGCCGCCCTCTTCCTCCTCTACTCCCTCACCGGCCTCCTCACCCTCAACAACTCCTCCTTCCCTTCCTCCCTCCTCAACCTGATCGGCCTTTTCGCGTTCGTCGAAGAGTTCATGTACTTTTATCTCCGGAGAAAAGACACCGTCGGAATCGAGAACCGCTACTTCGACATGCTGCTGGTGCCGATCTTCGTCTGCTTGTTCGGCACGCTTCTTCAATTGCGCAACAACTCTAGTTCGGTAATCCCCAACTTGGTTCGAGGAGTGGGGCTGGTGCTGCAGGGGCTGTGGTTCTTTCAAATGGGGCTTTCGATTTACACGCGTTGGATGGCGCACGGGTGCGTGTTGAAGGAGAAGAGCAGGGGGAATTATACGGTCAAGTGTAAGGGCCATCCGGAGTATCATAGGGCGAGAGCTATCGCGACGCTGCAGTTTAACTGCCATTTGGCTCTGATTGTGGTTTTGGTTGTTGGGGTGTATTCGGTTGTGGTGAGGAAGACAGGAGGTGGTGGTGGTGGGGGTGATATTTCGAGGTATAAGCCGCTTGGGGCGGAAATGCAGCATCAGATTGATAGTCAGGGGCAGTTTACTTTGGATTCTGATGAGGAGGAGGAGGAGGTTAGAGAAGAGGGTAAAGTGGTTAGGAACAAGGCTGGCGGGGAAGTGGAATTGGATGTGAATGGTAATGGTGCGCATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

323

Amino Acids

35.31

Weight (kDa)

7.05

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	113 - 249	1.5e-41	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01360 AT3G01360
fragaria_vesca	FvH4_6g50020
malus_domestica	MD09G1040200.v1.1 MD17G1040800.v1.1
prunus_persica	Prupe.3G278200_v2.0.a1
pyrus_communis	pycom17g03660
rosa_chinensis	RchiOBHm_Chr2g0170271
rosa_laevigata	RLG00000021934 RLG00000021942
rosa_multiflora	Rmu_sc0001605.1_g000004 Rmu_sc0012468.1_g000027 Rmu_sc0012468.1_g000028
rosa_roxburghii	Rroxscaffold_2G00081480 Rroxscaffold_2G00081520
rosa_rugosa	Rorug02G0547600
rosa_samantha	Rh2AG618900 Rh2AG619200 Rh2BG630100 Rh2CG600200 Rh2DG643000
rosa_wichuraiana	Rw2G051250 Rw2G051290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	491, 960
AccB1I	GGYRCC	1 cut(s)	448
AccII	CGCG	4 cut(s)	266, 365, 589, 689
AccIII	TCCGGA	2 cut(s)	396, 661
AciI	CCGC	8 cut(s)	24, 159, 264, 273, 427, 809, 818, 924
AclWI	GGATC	1 cut(s)	129
AcyI	GRCGYC	2 cut(s)	125, 213
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	3 cut(s)	231, 232, 520
AflIII	ACRYGT	1 cut(s)	587
AgsI	TTSAA	3 cut(s)	485, 566, 616
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	2 cut(s)	253, 683
AluI	AGCT	2 cut(s)	253, 683
AlwI	GGATC	1 cut(s)	129
AlwNI	CAGNNNCTG	1 cut(s)	553
Aor13HI	TCCGGA	2 cut(s)	396, 661
AoxI	GGCC	5 cut(s)	34, 243, 301, 355, 655
ApeKI	GCWGC	6 cut(s)	20, 250, 442, 544, 694, 826
AsiSI	GCGATCGC	1 cut(s)	270
AspLEI	GCGC	3 cut(s)	492, 601, 961
AspS9I	GGNCC	2 cut(s)	244, 655
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	5 cut(s)	4, 289, 301, 769, 800
AsuII	TTCGAA	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	770
BbvI	GCAGC	6 cut(s)	7, 262, 429, 531, 681, 838
BccI	CCATC	3 cut(s)	71, 589, 666
BceAI	ACGGC	2 cut(s)	112, 200
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	2 cut(s)	545, 695
Bme1390I	CCNGG	2 cut(s)	233, 257
BmgT120I	GGNCC	2 cut(s)	244, 655
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	233, 257
BmsI	GCATC	1 cut(s)	838
BpiI	GAAGAC	1 cut(s)	770
BpmI	CTGGAG	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	233
BsaHI	GRCGYC	2 cut(s)	125, 213
BsaWI	WCCGGW	2 cut(s)	396, 661
BsaXI	ACNNNNNCTCC	6 cut(s)	70, 100, 140, 170, 308, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 232, 520
Bse118I	RCCGGY	1 cut(s)	299
BseAI	TCCGGA	2 cut(s)	396, 661
BseBI	CCWGG	1 cut(s)	257
BseGI	GGATG	5 cut(s)	39, 183, 600, 658, 946
BseLI	CCNNNNNNNGG	3 cut(s)	231, 232, 520
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	6 cut(s)	7, 262, 429, 531, 681, 838
BseYI	CCCAGC	1 cut(s)	246
Bsh1236I	CGCG	4 cut(s)	266, 365, 589, 689
Bsh1285I	CGRYCG	2 cut(s)	232, 270
BshFI	GGCC	5 cut(s)	36, 245, 303, 357, 657
BshNI	GGYRCC	1 cut(s)	448
BsiEI	CGRYCG	2 cut(s)	232, 270
BsiSI	CCGG	4 cut(s)	232, 300, 397, 662
BslI	CCNNNNNNNGG	3 cut(s)	231, 232, 520
BsnI	GGCC	5 cut(s)	36, 245, 303, 357, 657
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	2 cut(s)	396, 661
Bsp143I	GATC	4 cut(s)	134, 267, 351, 453
Bsp68I	TCGCGA	1 cut(s)	689
BspACI	CCGC	8 cut(s)	24, 159, 264, 273, 427, 809, 818, 924
BspANI	GGCC	5 cut(s)	36, 245, 303, 357, 657
BspEI	TCCGGA	2 cut(s)	396, 661
BspFNI	CGCG	4 cut(s)	266, 365, 589, 689
BspLI	GGNNCC	1 cut(s)	450
BspMAI	CTGCAG	2 cut(s)	549, 699
BspPI	GGATC	1 cut(s)	129
BspQI	GCTCTTC	1 cut(s)	617
BspT104I	TTCGAA	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	448
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssMI	GATC	4 cut(s)	134, 267, 351, 453
BssNI	GRCGYC	2 cut(s)	125, 213
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	412, 643
Bst6I	CTCTTC	5 cut(s)	185, 284, 369, 617, 888
BstACI	GRCGYC	2 cut(s)	125, 213
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	28, 476, 922
BstF5I	GGATG	5 cut(s)	39, 183, 600, 658, 946
BstFNI	CGCG	4 cut(s)	266, 365, 589, 689
BstHHI	GCGC	3 cut(s)	492, 601, 961
BstKTI	GATC	4 cut(s)	137, 270, 354, 456
BstMBI	GATC	4 cut(s)	134, 267, 351, 453
BstMCI	CGRYCG	2 cut(s)	232, 270
BstMWI	GCNNNNNNNGC	6 cut(s)	269, 272, 448, 471, 544, 550
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	231, 255
BstSFI	CTRYAG	2 cut(s)	545, 695
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	4 cut(s)	266, 365, 589, 689
BstV1I	GCAGC	6 cut(s)	7, 262, 429, 531, 681, 838
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	5 cut(s)	36, 245, 303, 357, 657
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	5 cut(s)	39, 183, 600, 658, 946
BtuMI	TCGCGA	1 cut(s)	689
Cac8I	GCNNGC	3 cut(s)	28, 476, 922
CaiI	CAGNNNCTG	1 cut(s)	553
CfoI	GCGC	3 cut(s)	492, 601, 961
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	244, 655
CseI	GACGC	3 cut(s)	133, 221, 700
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	4 cut(s)	46, 382, 439, 966
CviQI	GTAC	1 cut(s)	385
DpnI	GATC	4 cut(s)	136, 269, 353, 455
DpnII	GATC	4 cut(s)	134, 267, 351, 453
Eam1104I	CTCTTC	5 cut(s)	185, 284, 369, 617, 888
EarI	CTCTTC	5 cut(s)	185, 284, 369, 617, 888
EciI	GGCGGA	1 cut(s)	833
EcoRII	CCWGG	1 cut(s)	255
FaeI	CATG	4 cut(s)	49, 385, 442, 969
FaiI	YATR	8 cut(s)	47, 383, 440, 639, 672, 804, 963, 967
FatI	CATG	4 cut(s)	45, 381, 438, 965
FauI	CCCGC	1 cut(s)	917
FokI	GGATG	5 cut(s)	26, 170, 607, 645, 953
FspAI	RTGCGCAY	1 cut(s)	960
FspBI	CTAG	1 cut(s)	501
FspI	TGCGCA	2 cut(s)	491, 960
GlaI	GCGC	3 cut(s)	491, 600, 960
GsaI	CCCAGC	1 cut(s)	250
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	5 cut(s)	36, 245, 303, 357, 657
HapII	CCGG	4 cut(s)	232, 300, 397, 662
HgaI	GACGC	3 cut(s)	133, 221, 700
HhaI	GCGC	3 cut(s)	492, 601, 961
Hin1I	GRCGYC	2 cut(s)	125, 213
Hin1II	CATG	4 cut(s)	49, 385, 442, 969
Hin6I	GCGC	3 cut(s)	490, 599, 959
HinP1I	GCGC	3 cut(s)	490, 599, 959
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	3 cut(s)	6, 417, 863
HpaII	CCGG	4 cut(s)	232, 300, 397, 662
HphI	GGTGA	5 cut(s)	4, 289, 301, 769, 800
Hpy166II	GTNNAC	2 cut(s)	220, 855
Hpy188I	TCNGA	4 cut(s)	416, 720, 834, 868
Hpy188III	TCNNGA	5 cut(s)	132, 397, 421, 662, 688
Hpy8I	GTNNAC	2 cut(s)	220, 855
Hpy99I	CGWCG	5 cut(s)	127, 215, 374, 416, 694
HpyAV	CCTTC	7 cut(s)	25, 151, 184, 214, 337, 342, 610
HpyCH4III	ACNGT	2 cut(s)	412, 643
HpyCH4V	TGCA	3 cut(s)	547, 697, 826
HpyF10VI	GCNNNNNNNGC	6 cut(s)	269, 272, 448, 471, 544, 550
Hsp92I	GRCGYC	2 cut(s)	125, 213
Hsp92II	CATG	4 cut(s)	49, 385, 442, 969
HspAI	GCGC	3 cut(s)	490, 599, 959
Kpn2I	TCCGGA	2 cut(s)	396, 661
Kzo9I	GATC	4 cut(s)	134, 267, 351, 453
LguI	GCTCTTC	1 cut(s)	617
LmnI	GCTCC	1 cut(s)	258
Lsp1109I	GCAGC	6 cut(s)	7, 262, 429, 531, 681, 838
LweI	GCATC	1 cut(s)	838
MaeI	CTAG	1 cut(s)	501
MalI	GATC	4 cut(s)	136, 269, 353, 455
MboI	GATC	4 cut(s)	134, 267, 351, 453
MboII	GAAGA	9 cut(s)	172, 199, 271, 386, 448, 473, 634, 775, 905
MfeI	CAATTG	1 cut(s)	485
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	3 cut(s)	485, 634, 935
MluI	ACGCGT	1 cut(s)	587
MmeI	TCCRAC	2 cut(s)	394, 572
MroI	TCCGGA	2 cut(s)	396, 661
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	4 cut(s)	232, 300, 397, 662
MspR9I	CCNGG	2 cut(s)	233, 257
MunI	CAATTG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	4 cut(s)	266, 365, 589, 689
MwoI	GCNNNNNNNGC	6 cut(s)	269, 272, 448, 471, 544, 550
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	4 cut(s)	134, 267, 351, 453
NlaIII	CATG	4 cut(s)	49, 385, 442, 969
NlaIV	GGNNCC	1 cut(s)	450
NruI	TCGCGA	1 cut(s)	689
NsbI	TGCGCA	2 cut(s)	491, 960
NspI	RCATGY	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	617
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	6, 417, 863
PflFI	GACNNNGTC	4 cut(s)	127, 215, 233, 410
Ple19I	CGATCG	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	2 cut(s)	244, 655
PstI	CTGCAG	2 cut(s)	549, 699
PstNI	CAGNNNCTG	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	134
PsyI	GACNNNGTC	4 cut(s)	127, 215, 233, 410
PvuI	CGATCG	1 cut(s)	270
RgaI	GCGATCGC	1 cut(s)	270
RruI	TCGCGA	1 cut(s)	689
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	617
SaqAI	TTAA	1 cut(s)	702
Sau3AI	GATC	4 cut(s)	134, 267, 351, 453
Sau96I	GGNCC	2 cut(s)	244, 655
ScrFI	CCNGG	2 cut(s)	233, 257
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	9 cut(s)	17, 83, 255, 261, 351, 685, 775, 803, 888
SfaAI	GCGATCGC	1 cut(s)	270
SfaNI	GCATC	1 cut(s)	838
SfcI	CTRYAG	2 cut(s)	545, 695
SfuI	TTCGAA	1 cut(s)	57
SgfI	GCGATCGC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	485, 634, 935
SsiI	CCGC	8 cut(s)	24, 159, 264, 273, 427, 809, 818, 924
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	231, 255
TaaI	ACNGT	2 cut(s)	412, 643
TaqI	TCGA	8 cut(s)	57, 210, 372, 420, 435, 526, 578, 797
TasI	AATT	3 cut(s)	485, 634, 935
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	4 cut(s)	26, 266, 275, 811
TfiI	GAWTC	3 cut(s)	6, 417, 863
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TseI	GCWGC	6 cut(s)	20, 250, 442, 544, 694, 826
TspDTI	ATGAA	3 cut(s)	133, 172, 370
Tth111I	GACNNNGTC	4 cut(s)	127, 215, 233, 410
XceI	RCATGY	1 cut(s)	442
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.