Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001605.1

Orthogroup ID

OG0008673

Physical Location & Seq

Genomic Coordinates Forward (+)

12347 .. 12925

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001605.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgtacttttatcttcaaagaaaagacactgctggaatcgagaatcgatactttgatctgctgctggtgccgattttcgtctgtgtcttctccacagttcttgaattgcacaaccctaaatcggttttccccaaattggctcgcggagttggcttggttctacaaggactgtggttcctgcaaatgggtctttcgatttatacgcgttggatggctcatgggtgctcattgaaggaaaagagtagagggaattacacggttaagtgtaaggggcaccctgaatatcatagggctagcgctatcgctacgcttcagtttaactgccatttggctctgatagtggttttggtggtggggctgtgttcgattgtggcgaggaaaacaggagttgttgctgatttctcgagctataagccgcttggcgcggagatgcagcatcagattgatagtcagggacagtttactttggattcggaggatgatagtgatgaggaggttagagaagagggcaatgtggttatgaacaaggccggcggggaagtggaattgggtgtgaatggtaatgggacttataaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

192

Amino Acids

21.38

Weight (kDa)

6.59

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01360 AT3G01360
fragaria_vesca	FvH4_6g50020
malus_domestica	MD09G1040200.v1.1 MD17G1040800.v1.1
prunus_persica	Prupe.3G278200_v2.0.a1
pyrus_communis	pycom17g03660
rosa_chinensis	RchiOBHm_Chr2g0170271
rosa_laevigata	RLG00000021934 RLG00000021942
rosa_multiflora	Rmu_sc0001605.1_g000004 Rmu_sc0012468.1_g000027 Rmu_sc0012468.1_g000028
rosa_roxburghii	Rroxscaffold_2G00081480 Rroxscaffold_2G00081520
rosa_rugosa	Rorug02G0547600
rosa_samantha	Rh2AG618900 Rh2AG619200 Rh2BG630100 Rh2CG600200 Rh2DG643000
rosa_wichuraiana	Rw2G051250 Rw2G051290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AccB1I	GGYRCC	2 cut(s)	67, 273
AccII	CGCG	3 cut(s)	144, 205, 425
AciI	CCGC	4 cut(s)	144, 416, 425, 534
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	3 cut(s)	121, 136, 184
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	17, 104, 232
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw21I	GWGCWC	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	403
Aor51HI	AGCGCT	1 cut(s)	298
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	2 cut(s)	61, 433
AspLEI	GCGC	2 cut(s)	299, 425
AsuNHI	GCTAGC	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	403
BaeGI	GKGCMC	1 cut(s)	276
BanI	GGYRCC	2 cut(s)	67, 273
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	48, 445
BccI	CCATC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	3 cut(s)	62, 416, 434
BlsI	GCNGC	3 cut(s)	63, 417, 435
BmeT110I	CYCGRG	1 cut(s)	403
BmiI	GGNNCC	3 cut(s)	69, 176, 275
BmsI	GCATC	2 cut(s)	420, 445
BmtI	GCTAGC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 136, 184
Bse118I	RCCGGY	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	517
BseCI	ATCGAT	1 cut(s)	46
BseGI	GGATG	2 cut(s)	216, 484
BseLI	CCNNNNNNNGG	3 cut(s)	121, 136, 184
BseMI	GCAATG	1 cut(s)	517
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	48, 445
Bsh1236I	CGCG	3 cut(s)	144, 205, 425
BshFI	GGCC	1 cut(s)	530
BshNI	GGYRCC	2 cut(s)	67, 273
BshVI	ATCGAT	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	531
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	3 cut(s)	121, 136, 184
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	530
BsoBI	CYCGRG	1 cut(s)	403
Bsp1286I	GDGCHC	2 cut(s)	227, 276
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	4 cut(s)	144, 416, 425, 534
BspANI	GGCC	1 cut(s)	530
BspDI	ATCGAT	1 cut(s)	46
BspFNI	CGCG	3 cut(s)	144, 205, 425
BspLI	GGNNCC	3 cut(s)	69, 176, 275
BspOI	GCTAGC	1 cut(s)	297
BspT107I	GGYRCC	2 cut(s)	67, 273
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	530
BssAI	RCCGGY	1 cut(s)	530
BssMI	GATC	1 cut(s)	55
Bst4CI	ACNGT	4 cut(s)	97, 171, 259, 459
Bst6I	CTCTTC	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	142, 295, 532
BstF5I	GGATG	2 cut(s)	216, 484
BstFNI	CGCG	3 cut(s)	144, 205, 425
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	299, 425
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 150
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	3 cut(s)	144, 205, 425
BstV1I	GCAGC	2 cut(s)	48, 445
BstV2I	GAAGAC	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	530
BsuTUI	ATCGAT	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	216, 484
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	142, 295, 532
CfoI	GCGC	2 cut(s)	299, 425
Cfr10I	RCCGGY	1 cut(s)	530
ClaI	ATCGAT	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	4 cut(s)	82, 117, 152, 187
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	9 cut(s)	140, 153, 215, 293, 332, 358, 408, 415, 530
CviKI_1	RGCY	9 cut(s)	140, 153, 215, 293, 332, 358, 408, 415, 530
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco47III	AGCGCT	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	403
FaeI	CATG	1 cut(s)	221
FaiI	YATR	6 cut(s)	201, 219, 288, 411, 521, 573
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	1 cut(s)	217
FauI	CCCGC	1 cut(s)	527
Fnu4HI	GCNGC	3 cut(s)	62, 416, 434
FokI	GGATG	2 cut(s)	223, 491
Fsp4HI	GCNGC	3 cut(s)	62, 416, 434
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	2 cut(s)	298, 424
GluI	GCNGC	3 cut(s)	62, 416, 434
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	1 cut(s)	531
HhaI	GCGC	2 cut(s)	299, 425
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	2 cut(s)	297, 423
HinP1I	GCGC	2 cut(s)	297, 423
HinfI	GANTC	3 cut(s)	36, 43, 470
HpaII	CCGG	1 cut(s)	531
Hpy166II	GTNNAC	1 cut(s)	462
Hpy188I	TCNGA	3 cut(s)	336, 441, 475
Hpy188III	TCNNGA	3 cut(s)	40, 101, 403
Hpy8I	GTNNAC	1 cut(s)	462
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	4 cut(s)	97, 171, 259, 459
HpyCH4V	TGCA	3 cut(s)	109, 181, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 150
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	2 cut(s)	297, 423
KroI	GCCGGC	1 cut(s)	530
KroNI	GCCGGC	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	7 cut(s)	18, 50, 191, 291, 369, 437, 544
Lsp1109I	GCAGC	2 cut(s)	48, 445
LweI	GCATC	2 cut(s)	420, 445
MaeI	CTAG	1 cut(s)	294
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	3 cut(s)	5, 79, 515
MhlI	GDGCHC	2 cut(s)	227, 276
MluCI	AATT	4 cut(s)	104, 134, 250, 545
MluI	ACGCGT	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	6 cut(s)	239, 369, 469, 484, 487, 499
MroNI	GCCGGC	1 cut(s)	530
MseI	TTAA	2 cut(s)	261, 318
MspI	CCGG	1 cut(s)	531
MvnI	CGCG	3 cut(s)	144, 205, 425
MwoI	GCNNNNNNNGC	2 cut(s)	67, 150
NaeI	GCCGGC	1 cut(s)	532
NdeII	GATC	1 cut(s)	55
NgoMIV	GCCGGC	1 cut(s)	530
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	3 cut(s)	69, 176, 275
PaeR7I	CTCGAG	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	36, 43, 470
PkrI	GCNGC	3 cut(s)	63, 417, 435
PsiI	TTATAA	1 cut(s)	573
PspN4I	GGNNCC	3 cut(s)	69, 176, 275
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	261, 318
SatI	GCNGC	3 cut(s)	62, 416, 434
Sau3AI	GATC	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	227, 276
SetI	ASST	2 cut(s)	410, 498
SfaNI	GCATC	2 cut(s)	420, 445
Sfr274I	CTCGAG	1 cut(s)	403
SlaI	CTCGAG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	4 cut(s)	104, 134, 250, 545
SsiI	CCGC	4 cut(s)	144, 416, 425, 534
SspMI	CTAG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	97, 171, 259, 459
TaqI	TCGA	5 cut(s)	39, 46, 194, 365, 404
TasI	AATT	4 cut(s)	104, 134, 250, 545
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	3 cut(s)	36, 43, 470
Tru1I	TTAA	2 cut(s)	261, 318
Tru9I	TTAA	2 cut(s)	261, 318
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	2 cut(s)	61, 433
TspDTI	ATGAA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	403
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.