Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006098

Physical Location & Seq

Genomic Coordinates Reverse (-)

169597 .. 172045

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTGCCAAGGCTTTAAAAGATTTGAAGAATCTTCCTGTCTCTGAGAGGAATATCGACTATAAAACAAAGCTTTTGGTTGGCAAAATGAATGGAACAGCTGAAGATAAACCACCACAAAACTCTGTCCCCTTTGATCACAATCATCCTAAAGGCGATGAGATTGAGAAACCTGAGGCAGAGAGAGTTATCGTAGAAATTGAGTATATAGAATCCAAAGACTTGAACAATGTAACCCAAGTTGATGCAGTTCTCAAGTCACTTGTAACCGAGCTAGACTCCAAGGATTGGGTTTTGGTCTGTGATGCTCTTAATACCATTCGTCGTCTTTCCATATTCCACAAGGAAGAAATGCTGCATATGCTGGAGAAAGTGATCCTGTTTATCGTGAAATCACTGAAGAACCCAAGAAGTGCTGTAAGTAAAACCGCATGTATGACATCTGCTGACATCTTCAGCTCATATAATGACCATACAATCGATCAATTGGATCTCTTGCTTACTCAACTCCTCCTTAAATCTTCCCAAGACAAGCGATTTGTTTGTGAAGCAGCAGAAAAAGCATTAGTAGCAATGACTGCACATGTTTCTCCTGCCTTGCTGTTGCCAAAGCTTCAACCTTTTCTCAAGAATAGGAATCCTCGGATCCGCGCAAAAGCATCCACGTGCTTCTCCCGATGTGTTCCCCGACTGGGCATTGAAGGCATTAGAGAATATGGAATTGAGAAACTAGTCCAAGCAGCATCGTCTCAGCTCAGTGACCAACTCCCAGAATCTCGGGAGGCTGCACGGGCAGTCTTACTGGAACTTCAGACAGTGTACAAGAAAACTACTAATGTCGAACCGAAGGAGGAGCATCCAGAGCCAGTCACTTGGCAAATCTTCTGCCAATCAAACCTCTCACCTCTTAGTGCACAGGCTGTGATACGTGTCACCAATGTCGCAGGTGTGGCTCGAGAGGGTCTTGTTGCGGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

326

Amino Acids

36.35

Weight (kDa)

7.62

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CEP104-like_TOG	PF21040	86 - 264	1e-06	Centrosomal protein CEP104-like, TOG domain
CLASP_N	PF12348	116 - 276	2.1e-10	CLASP N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01450 AT3G01450 AT3G18530 AT3G18530 AT3G18530 AT5G14790
fragaria_vesca	FvH4_6g50550 FvH4_6g50550
malus_domestica	MD09G1035400.v1.1 MD17G1035600.v1.1
prunus_persica	Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1
pyrus_communis	pycom111g02820
rosa_chinensis	RchiOBHm_Chr2g0171061
rosa_laevigata	RLG00000022000
rosa_multiflora	Rmu_sc0003517.1_g000003 Rmu_sc0007623.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080840
rosa_rugosa	Rorug02G0553400 Rorug02G0553400
rosa_samantha	Rh2AG626900 Rh2BG636900 Rh2CG605800 Rh2DG648500 Rh2DG654000
rosa_wichuraiana	Rw2G051890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	935
Acc36I	ACCTGC	1 cut(s)	935
AccB7I	CCANNNNNTGG	1 cut(s)	288
AccII	CGCG	1 cut(s)	651
AciI	CCGC	3 cut(s)	429, 649, 971
AclWI	GGATC	4 cut(s)	370, 498, 640, 653
AcuI	CTGAAG	4 cut(s)	123, 419, 439, 794
AcvI	CACGTG	1 cut(s)	666
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	2 cut(s)	288, 692
AflIII	ACRYGT	2 cut(s)	583, 928
AgsI	TTSAA	4 cut(s)	28, 226, 617, 701
AhlI	ACTAGT	1 cut(s)	730
AluBI	AGCT	6 cut(s)	73, 101, 274, 459, 613, 754
AluI	AGCT	6 cut(s)	73, 101, 274, 459, 613, 754
Alw21I	GWGCWC	1 cut(s)	916
Alw26I	GTCTC	2 cut(s)	46, 753
Alw44I	GTGCAC	1 cut(s)	912
AlwI	GGATC	4 cut(s)	370, 498, 640, 653
Ama87I	CYCGRG	2 cut(s)	777, 954
ApaLI	GTGCAC	1 cut(s)	912
ApeKI	GCWGC	5 cut(s)	5, 355, 551, 740, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AspLEI	GCGC	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	894, 925
AvaI	CYCGRG	2 cut(s)	777, 954
AxyI	CCTNAGG	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	916
BamHI	GGATCC	1 cut(s)	645
BbrPI	CACGTG	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	916
BbvI	GCAGC	4 cut(s)	342, 563, 752, 772
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	46, 753
BcuI	ACTAGT	1 cut(s)	730
BfaI	CTAG	2 cut(s)	275, 731
BfuAI	ACCTGC	1 cut(s)	935
BisI	GCNGC	5 cut(s)	6, 356, 552, 741, 786
BlsI	GCNGC	5 cut(s)	7, 357, 553, 742, 787
BmeT110I	CYCGRG	2 cut(s)	777, 954
BmiI	GGNNCC	1 cut(s)	647
BmrI	ACTGGG	1 cut(s)	701
BmsI	GCATC	5 cut(s)	235, 295, 668, 752, 865
BmuI	ACTGGG	1 cut(s)	701
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpmI	CTGGAG	1 cut(s)	386
BpuEI	CTTGAG	2 cut(s)	239, 611
Bsa29I	ATCGAT	1 cut(s)	480
BsaAI	YACGTR	2 cut(s)	666, 929
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	9, 282, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 692
Bse1I	ACTGG	3 cut(s)	696, 807, 866
Bse21I	CCTNAGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	579
Bse8I	GATNNNNATC	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	9, 282, 641
BseGI	GGATG	3 cut(s)	145, 659, 856
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	288, 692
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	4 cut(s)	36, 165, 764, 769
BseNI	ACTGG	3 cut(s)	696, 807, 866
BseRI	GAGGAG	2 cut(s)	500, 866
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	4 cut(s)	342, 563, 752, 772
BsgI	GTGCAG	2 cut(s)	564, 771
Bsh1236I	CGCG	1 cut(s)	651
BshVI	ATCGAT	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	916
BsiHKCI	CYCGRG	2 cut(s)	777, 954
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	288, 692
BsmAI	GTCTC	2 cut(s)	46, 753
BsmBI	CGTCTC	1 cut(s)	753
BsmFI	GGGAC	1 cut(s)	113
BsoBI	CYCGRG	2 cut(s)	777, 954
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp1407I	TGTACA	1 cut(s)	819
Bsp143I	GATC	5 cut(s)	136, 375, 481, 490, 645
BspACI	CCGC	3 cut(s)	429, 649, 971
BspCNI	CTCAG	4 cut(s)	37, 166, 763, 768
BspDI	ATCGAT	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	651
BspHI	TCATGA	1 cut(s)	977
BspLI	GGNNCC	1 cut(s)	647
BspMI	ACCTGC	1 cut(s)	935
BspPI	GGATC	4 cut(s)	370, 498, 640, 653
BsrDI	GCAATG	1 cut(s)	579
BsrGI	TGTACA	1 cut(s)	819
BsrI	ACTGG	3 cut(s)	696, 807, 866
BssECI	CCNNGG	3 cut(s)	9, 282, 641
BssMI	GATC	5 cut(s)	136, 375, 481, 490, 645
BssT1I	CCWWGG	2 cut(s)	9, 282
Bst4CI	ACNGT	1 cut(s)	817
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	819
BstBAI	YACGTR	2 cut(s)	666, 929
BstDEI	CTNAG	5 cut(s)	45, 174, 750, 755, 908
BstF5I	GGATG	3 cut(s)	145, 659, 856
BstFNI	CGCG	1 cut(s)	651
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	5 cut(s)	139, 378, 484, 493, 648
BstMAI	GTCTC	2 cut(s)	46, 753
BstMBI	GATC	5 cut(s)	136, 375, 481, 490, 645
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 361, 560, 569, 578, 702, 791, 862, 950
BstNSI	RCATGY	2 cut(s)	435, 587
BstSLI	GKGCMC	1 cut(s)	916
BstUI	CGCG	1 cut(s)	651
BstV1I	GCAGC	4 cut(s)	342, 563, 752, 772
BstX2I	RGATCY	2 cut(s)	490, 645
BstXI	CCANNNNNNTGG	1 cut(s)	873
BstYI	RGATCY	2 cut(s)	490, 645
Bsu15I	ATCGAT	1 cut(s)	480
Bsu36I	CCTNAGG	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	480
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	145, 659, 856
BtsIMutI	CAGTG	3 cut(s)	395, 763, 822
BveI	ACCTGC	1 cut(s)	935
CciI	TCATGA	1 cut(s)	977
CfoI	GCGC	1 cut(s)	653
ClaI	ATCGAT	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	820
CviAII	CATG	3 cut(s)	432, 584, 978
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	5 cut(s)	45, 174, 750, 755, 908
DpnI	GATC	5 cut(s)	138, 377, 483, 492, 647
DpnII	GATC	5 cut(s)	136, 375, 481, 490, 645
DraI	TTTAAA	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	9, 282
Eco57I	CTGAAG	4 cut(s)	123, 419, 439, 794
Eco72I	CACGTG	1 cut(s)	666
Eco81I	CCTNAGG	1 cut(s)	174
Eco88I	CYCGRG	2 cut(s)	777, 954
EcoT14I	CCWWGG	2 cut(s)	9, 282
ErhI	CCWWGG	2 cut(s)	9, 282
Esp3I	CGTCTC	1 cut(s)	753
FaeI	CATG	3 cut(s)	435, 587, 981
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	3 cut(s)	431, 583, 977
FauI	CCCGC	1 cut(s)	964
FauNDI	CATATG	1 cut(s)	360
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	5 cut(s)	6, 356, 552, 741, 786
FokI	GGATG	3 cut(s)	132, 646, 843
Fsp4HI	GCNGC	5 cut(s)	6, 356, 552, 741, 786
FspBI	CTAG	2 cut(s)	275, 731
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	5 cut(s)	6, 356, 552, 741, 786
GsuI	CTGGAG	1 cut(s)	386
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	3 cut(s)	435, 587, 981
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HindIII	AAGCTT	2 cut(s)	71, 611
HinfI	GANTC	5 cut(s)	31, 212, 278, 637, 773
HphI	GGTGA	2 cut(s)	894, 925
Hpy166II	GTNNAC	2 cut(s)	820, 914
Hpy188I	TCNGA	3 cut(s)	46, 645, 813
Hpy188III	TCNNGA	7 cut(s)	388, 628, 675, 779, 860, 956, 978
Hpy8I	GTNNAC	2 cut(s)	820, 914
Hpy99I	CGWCG	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	695, 841
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	2 cut(s)	665, 928
HpyCH4V	TGCA	5 cut(s)	248, 358, 581, 788, 914
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 361, 560, 569, 578, 702, 791, 862, 950
HpyF3I	CTNAG	5 cut(s)	45, 174, 750, 755, 908
HpySE526I	ACGT	2 cut(s)	665, 928
Hsp92II	CATG	3 cut(s)	435, 587, 981
HspAI	GCGC	1 cut(s)	651
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	5 cut(s)	136, 375, 481, 490, 645
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	4 cut(s)	342, 563, 752, 772
LweI	GCATC	5 cut(s)	235, 295, 668, 752, 865
MaeI	CTAG	2 cut(s)	275, 731
MaeII	ACGT	2 cut(s)	665, 928
MaeIII	GTNAC	6 cut(s)	232, 258, 265, 758, 868, 931
MalI	GATC	5 cut(s)	138, 377, 483, 492, 647
MboI	GATC	5 cut(s)	136, 375, 481, 490, 645
MboII	GAAGA	8 cut(s)	26, 40, 116, 359, 412, 445, 513, 874
MfeI	CAATTG	1 cut(s)	485
MflI	RGATCY	2 cut(s)	490, 645
MhlI	GDGCHC	1 cut(s)	916
MluCI	AATT	3 cut(s)	198, 485, 720
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	9 cut(s)	42, 169, 521, 651, 775, 844, 908, 915, 952
MseI	TTAA	3 cut(s)	17, 312, 516
MslI	CAYNNNNRTG	1 cut(s)	664
MspA1I	CMGCKG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	651
MwoI	GCNNNNNNNGC	9 cut(s)	11, 361, 560, 569, 578, 702, 791, 862, 950
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	5 cut(s)	136, 375, 481, 490, 645
NlaIII	CATG	3 cut(s)	435, 587, 981
NlaIV	GGNNCC	1 cut(s)	647
NmuCI	GTSAC	4 cut(s)	258, 758, 868, 931
NspI	RCATGY	2 cut(s)	435, 587
PaeR7I	CTCGAG	1 cut(s)	954
PagI	TCATGA	1 cut(s)	977
PaqCI	CACCTGC	1 cut(s)	935
PciI	ACATGT	1 cut(s)	583
PfeI	GAWTC	4 cut(s)	31, 212, 637, 773
PflMI	CCANNNNNTGG	1 cut(s)	288
PkrI	GCNGC	5 cut(s)	7, 357, 553, 742, 787
PleI	GAGTC	1 cut(s)	272
PmaCI	CACGTG	1 cut(s)	666
PmlI	CACGTG	1 cut(s)	666
PpsI	GAGTC	1 cut(s)	272
Ppu21I	YACGTR	2 cut(s)	666, 929
PscI	ACATGT	1 cut(s)	583
PspCI	CACGTG	1 cut(s)	666
PspN4I	GGNNCC	1 cut(s)	647
PsuI	RGATCY	2 cut(s)	490, 645
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	1 cut(s)	664
SaqAI	TTAA	3 cut(s)	17, 312, 516
SatI	GCNGC	5 cut(s)	6, 356, 552, 741, 786
Sau3AI	GATC	5 cut(s)	136, 375, 481, 490, 645
SchI	GAGTC	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	916
SfaNI	GCATC	5 cut(s)	235, 295, 668, 752, 865
Sfr274I	CTCGAG	1 cut(s)	954
SlaI	CTCGAG	1 cut(s)	954
SmiMI	CAYNNNNRTG	1 cut(s)	664
SmlI	CTYRAG	3 cut(s)	254, 626, 954
SmoI	CTYRAG	3 cut(s)	254, 626, 954
SpeI	ACTAGT	1 cut(s)	730
Sse9I	AATT	3 cut(s)	198, 485, 720
SsiI	CCGC	3 cut(s)	429, 649, 971
SspMI	CTAG	2 cut(s)	275, 731
StyI	CCWWGG	2 cut(s)	9, 282
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	2 cut(s)	668, 931
TaqI	TCGA	4 cut(s)	57, 480, 840, 955
TasI	AATT	3 cut(s)	198, 485, 720
TatI	WGTACW	1 cut(s)	819
TfiI	GAWTC	4 cut(s)	31, 212, 637, 773
Tru1I	TTAA	3 cut(s)	17, 312, 516
Tru9I	TTAA	3 cut(s)	17, 312, 516
TscAI	CASTG	3 cut(s)	402, 763, 822
TseFI	GTSAC	4 cut(s)	258, 758, 868, 931
TseI	GCWGC	5 cut(s)	5, 355, 551, 740, 785
Tsp45I	GTSAC	4 cut(s)	258, 758, 868, 931
TspDTI	ATGAA	2 cut(s)	104, 966
TspRI	CASTG	3 cut(s)	402, 763, 822
Van91I	CCANNNNNTGG	1 cut(s)	288
VneI	GTGCAC	1 cut(s)	912
XceI	RCATGY	2 cut(s)	435, 587
XhoI	CTCGAG	1 cut(s)	954
XspI	CTAG	2 cut(s)	275, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.