Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006098

Physical Location & Seq

Genomic Coordinates Forward (+)

37598815 .. 37602313

Gene Structure 3499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50550.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCAGCTCTTAGAGATCTCAATACCATACCTGGATCTGAGAGGAAGAATGAAAGCTGTAGCAAAGGAGTCATAACTAAACCCTTTGCTGGGAATGCTACTGTAAATCATGAAGAGTGCCAGAAGAAAATCTCTGTCTCTTTGGGTGCCCCTTCTACTAATGGTGAGGAAGTTGTGAATGCCGTTGAGGTTGCAAATACAGAAGTAGAATACATCGACTCTGAGAATTTGAATGATGTCGAAGATGTTGATTTGAGTCTCAAGACACTCTTAACTGGACTAGACTCTAAAGATTGGGTTCTGCTTTGTGAAGCACTCAATACTGTCCGCCGGTTGTCCATTTTTCACAAGGAAACTATGCTAGAGAAACTGGGAGATGTGATTCCGCTTGTAGTAAGGTCCCTGAAGAATCCAAGAAGTGCTGTTTGCAAAACTGCGATTATGACATCTGCAGATATCTTCAACGCATACAATGACAGTATAGTTGATTCCCTGGACCCTCTGCTACTACAACTTCTTCTCAAGTCTTCACAAGATAAACGATTTGTATGTGAGGCAGCTGAAAGAGCTTTAGTAGCGATGACCACATGGGTTTCCCCCACATTGTTGTTACCAATGCTGCAACCATATCTCAAGCACAAAAATCCTAGAATTCGTGCGAAGGCATCAATGTGCTTTTGTCGAAGTGTTCCACGACTGGGTGTTGAAGGTACTAAAGCTTATGGGATTGACAAATTAATCCAAGTTGCTGCCTCCCAGCTTAGCGACCAGCTTCCTGAATCAAGGGAGGCTGCTCGAAGCCTCCTCCTTGAGTTGCAGACTGTTTATGAGAAATTTCAGAATCTCTCTCCAACAGCAGTATCTGAGGAGGTGCAACCCGAGGTGGACTCTTGGGAGAACTTCTGCCAATCGAAACTCTCCCCACTTAGCGCACAAGCTGTTCTTCGGGTGACCAATATCTCTCGGGAAGGTCTTGTTGTTGGCTCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

331

Amino Acids

36.29

Weight (kDa)

5.36

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01450 AT3G01450 AT3G18530 AT3G18530 AT3G18530 AT5G14790
fragaria_vesca	FvH4_6g50550 FvH4_6g50550
malus_domestica	MD09G1035400.v1.1 MD17G1035600.v1.1
prunus_persica	Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1
pyrus_communis	pycom111g02820
rosa_chinensis	RchiOBHm_Chr2g0171061
rosa_laevigata	RLG00000022000
rosa_multiflora	Rmu_sc0003517.1_g000003 Rmu_sc0007623.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080840
rosa_rugosa	Rorug02G0553400 Rorug02G0553400
rosa_samantha	Rh2AG626900 Rh2BG636900 Rh2CG605800 Rh2DG648500 Rh2DG654000
rosa_wichuraiana	Rw2G051890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	2 cut(s)	328, 386
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	3 cut(s)	226, 651, 833
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	3 cut(s)	89, 90, 698
AgsI	TTSAA	3 cut(s)	232, 463, 707
AjnI	CCWGG	2 cut(s)	31, 492
AluBI	AGCT	8 cut(s)	8, 57, 560, 569, 719, 760, 772, 938
AluI	AGCT	8 cut(s)	8, 57, 560, 569, 719, 760, 772, 938
Alw26I	GTCTC	2 cut(s)	142, 263
AlwI	GGATC	1 cut(s)	43
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	2 cut(s)	878, 963
ApeKI	GCWGC	4 cut(s)	557, 619, 749, 791
ApoI	RAATTY	3 cut(s)	226, 651, 833
AseI	ATTAAT	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	932
AspS9I	GGNCC	2 cut(s)	399, 496
AsuHPI	GGTGA	2 cut(s)	176, 961
AvaI	CYCGRG	2 cut(s)	878, 963
AvaII	GGWCC	2 cut(s)	399, 496
BaeGI	GKGCMC	1 cut(s)	151
BaeI	ACNNNNGTAYC	2 cut(s)	843, 876
BanI	GGYRCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	519
BbvI	GCAGC	4 cut(s)	569, 606, 736, 778
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	33, 494
BcoDI	GTCTC	2 cut(s)	142, 263
BfaI	CTAG	3 cut(s)	281, 362, 648
BfmI	CTRYAG	2 cut(s)	58, 450
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	4 cut(s)	558, 620, 750, 792
BlpI	GCTNAGC	1 cut(s)	761
BlsI	GCNGC	4 cut(s)	559, 621, 751, 793
Bme1390I	CCNGG	2 cut(s)	33, 494
Bme18I	GGWCC	2 cut(s)	399, 496
BmeT110I	CYCGRG	2 cut(s)	878, 963
BmgT120I	GGNCC	2 cut(s)	399, 496
BmiI	GGNNCC	4 cut(s)	148, 401, 498, 985
BmrFI	CCNGG	2 cut(s)	33, 494
BmrI	ACTGGG	2 cut(s)	380, 707
BmsI	GCATC	1 cut(s)	674
BmuI	ACTGGG	2 cut(s)	380, 707
BpiI	GAAGAC	1 cut(s)	519
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
Bpu1102I	GCTNAGC	1 cut(s)	761
BpuEI	CTTGAG	4 cut(s)	245, 506, 617, 830
BsaJI	CCNNGG	2 cut(s)	492, 879
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 90, 698
Bse118I	RCCGGY	1 cut(s)	330
Bse1I	ACTGG	3 cut(s)	280, 375, 702
BseBI	CCWGG	2 cut(s)	33, 494
BseDI	CCNNGG	2 cut(s)	492, 879
BseLI	CCNNNNNNNGG	3 cut(s)	89, 90, 698
BseMII	CTCAG	3 cut(s)	30, 213, 855
BseNI	ACTGG	3 cut(s)	280, 375, 702
BseRI	GAGGAG	3 cut(s)	794, 881, 976
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	4 cut(s)	569, 606, 736, 778
BseYI	CCCAGC	2 cut(s)	89, 756
BshNI	GGYRCC	1 cut(s)	146
BsiHKCI	CYCGRG	2 cut(s)	878, 963
BsiSI	CCGG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	89, 90, 698
BsmAI	GTCTC	2 cut(s)	142, 263
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	2 cut(s)	100, 184
BsoBI	CYCGRG	2 cut(s)	878, 963
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	16, 35
Bsp1720I	GCTNAGC	1 cut(s)	761
BspACI	CCGC	2 cut(s)	328, 386
BspCNI	CTCAG	3 cut(s)	31, 214, 856
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	4 cut(s)	148, 401, 498, 985
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	330
BsrI	ACTGG	3 cut(s)	280, 375, 702
BssAI	RCCGGY	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	492, 879
BssMI	GATC	2 cut(s)	16, 35
Bst2UI	CCWGG	2 cut(s)	33, 494
Bst4CI	ACNGT	4 cut(s)	103, 325, 479, 823
Bst6I	CTCTTC	1 cut(s)	108
BstDEI	CTNAG	6 cut(s)	11, 39, 222, 761, 864, 926
BstEII	GGTNACC	1 cut(s)	949
BstHHI	GCGC	1 cut(s)	932
BstKTI	GATC	2 cut(s)	19, 38
BstMAI	GTCTC	2 cut(s)	142, 263
BstMBI	GATC	2 cut(s)	16, 35
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 566, 575
BstNI	CCWGG	2 cut(s)	33, 494
BstPI	GGTNACC	1 cut(s)	949
BstSCI	CCNGG	2 cut(s)	31, 492
BstSFI	CTRYAG	2 cut(s)	58, 450
BstSLI	GKGCMC	1 cut(s)	151
BstV1I	GCAGC	4 cut(s)	569, 606, 736, 778
BstV2I	GAAGAC	1 cut(s)	519
BstX2I	RGATCY	2 cut(s)	16, 35
BstYI	RGATCY	2 cut(s)	16, 35
BtgZI	GCGATG	1 cut(s)	593
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	932
Cfr10I	RCCGGY	1 cut(s)	330
Cfr13I	GGNCC	2 cut(s)	399, 496
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	2 cut(s)	110, 588
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	6 cut(s)	11, 39, 222, 761, 864, 926
DpnI	GATC	2 cut(s)	18, 37
DpnII	GATC	2 cut(s)	16, 35
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	317
Eco32I	GATATC	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	399, 496
Eco57I	CTGAAG	1 cut(s)	425
Eco88I	CYCGRG	2 cut(s)	878, 963
Eco91I	GGTNACC	1 cut(s)	949
EcoO109I	RGGNCCY	1 cut(s)	399
EcoO65I	GGTNACC	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	651
EcoRII	CCWGG	2 cut(s)	31, 492
EcoRV	GATATC	1 cut(s)	457
FaeI	CATG	2 cut(s)	113, 591
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 927, 959
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	2 cut(s)	109, 587
Fnu4HI	GCNGC	4 cut(s)	558, 620, 750, 792
Fsp4HI	GCNGC	4 cut(s)	558, 620, 750, 792
FspBI	CTAG	3 cut(s)	281, 362, 648
GlaI	GCGC	1 cut(s)	931
GluI	GCNGC	4 cut(s)	558, 620, 750, 792
GsaI	CCCAGC	2 cut(s)	93, 760
HapII	CCGG	1 cut(s)	331
HhaI	GCGC	1 cut(s)	932
Hin1II	CATG	2 cut(s)	113, 591
Hin6I	GCGC	1 cut(s)	930
HinP1I	GCGC	1 cut(s)	930
HindIII	AAGCTT	1 cut(s)	717
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	2 cut(s)	176, 961
Hpy166II	GTNNAC	1 cut(s)	886
Hpy188I	TCNGA	4 cut(s)	40, 223, 840, 865
Hpy188III	TCNNGA	4 cut(s)	110, 262, 776, 965
Hpy8I	GTNNAC	1 cut(s)	886
HpyAV	CCTTC	4 cut(s)	162, 655, 701, 962
HpyCH4III	ACNGT	4 cut(s)	103, 325, 479, 823
HpyCH4V	TGCA	6 cut(s)	194, 429, 452, 622, 817, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 566, 575
HpyF3I	CTNAG	6 cut(s)	11, 39, 222, 761, 864, 926
Hsp92II	CATG	2 cut(s)	113, 591
HspAI	GCGC	1 cut(s)	930
Kzo9I	GATC	2 cut(s)	16, 35
LmnI	GCTCC	1 cut(s)	989
Lsp1109I	GCAGC	4 cut(s)	569, 606, 736, 778
LweI	GCATC	1 cut(s)	674
MaeI	CTAG	3 cut(s)	281, 362, 648
MaeIII	GTNAC	2 cut(s)	609, 949
MalI	GATC	2 cut(s)	18, 37
MboI	GATC	2 cut(s)	16, 35
MboII	GAAGA	9 cut(s)	58, 125, 136, 254, 418, 451, 509, 519, 935
MflI	RGATCY	2 cut(s)	16, 35
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	4 cut(s)	226, 651, 734, 833
MlyI	GAGTC	5 cut(s)	78, 212, 265, 278, 881
MmeI	TCCRAC	1 cut(s)	875
MseI	TTAA	3 cut(s)	272, 737, 991
MslI	CAYNNNNRTG	1 cut(s)	670
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	2 cut(s)	33, 494
Mva1269I	GAATGC	2 cut(s)	100, 184
MvaI	CCWGG	2 cut(s)	33, 494
MwoI	GCNNNNNNNGC	3 cut(s)	95, 566, 575
NdeII	GATC	2 cut(s)	16, 35
NlaIII	CATG	2 cut(s)	113, 591
NlaIV	GGNNCC	4 cut(s)	148, 401, 498, 985
NmuCI	GTSAC	1 cut(s)	949
PagI	TCATGA	1 cut(s)	109
PctI	GAATGC	2 cut(s)	100, 184
PfeI	GAWTC	5 cut(s)	382, 409, 488, 779, 841
PkrI	GCNGC	4 cut(s)	559, 621, 751, 793
PleI	GAGTC	5 cut(s)	77, 212, 264, 278, 881
PpsI	GAGTC	5 cut(s)	77, 212, 264, 278, 881
PpuMI	RGGWCCY	1 cut(s)	399
PshBI	ATTAAT	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	31, 492
PspEI	GGTNACC	1 cut(s)	949
PspFI	CCCAGC	2 cut(s)	89, 756
PspGI	CCWGG	2 cut(s)	31, 492
PspN4I	GGNNCC	4 cut(s)	148, 401, 498, 985
PspPI	GGNCC	2 cut(s)	399, 496
PspPPI	RGGWCCY	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	2 cut(s)	16, 35
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
RseI	CAYNNNNRTG	1 cut(s)	670
SaqAI	TTAA	3 cut(s)	272, 737, 991
SatI	GCNGC	4 cut(s)	558, 620, 750, 792
Sau3AI	GATC	2 cut(s)	16, 35
Sau96I	GGNCC	2 cut(s)	399, 496
SchI	GAGTC	5 cut(s)	78, 212, 265, 278, 881
ScrFI	CCNGG	2 cut(s)	33, 494
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	1 cut(s)	674
SfcI	CTRYAG	2 cut(s)	58, 450
SinI	GGWCC	2 cut(s)	399, 496
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	4 cut(s)	260, 521, 632, 809
SmoI	CTYRAG	4 cut(s)	260, 521, 632, 809
Sse9I	AATT	4 cut(s)	226, 651, 734, 833
SsiI	CCGC	2 cut(s)	328, 386
SspMI	CTAG	3 cut(s)	281, 362, 648
StyD4I	CCNGG	2 cut(s)	31, 492
TaaI	ACNGT	4 cut(s)	103, 325, 479, 823
TaqI	TCGA	5 cut(s)	216, 240, 682, 796, 911
TasI	AATT	4 cut(s)	226, 651, 734, 833
TfiI	GAWTC	5 cut(s)	382, 409, 488, 779, 841
Tru1I	TTAA	3 cut(s)	272, 737, 991
Tru9I	TTAA	3 cut(s)	272, 737, 991
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	4 cut(s)	557, 619, 749, 791
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	2 cut(s)	66, 126
VpaK11BI	GGWCC	2 cut(s)	399, 496
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	3 cut(s)	226, 651, 833
XspI	CTAG	3 cut(s)	281, 362, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.