Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006098

Physical Location & Seq

Genomic Coordinates Forward (+)

4782909 .. 4785847

Gene Structure 2939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCCAGTAATACTTTGAAAGAGATGAATAGTCTTCATGTAACTGAGAAGATAAGTGACTGTAAAGCTAGCTTGACCAAGCCATGTGTTGGTAAAATGAATGGAAAATCTGAAGATAGACCATTACCAAACTCTGCCTCCTTGGATTCCAGTGATTCTAAAGTTGTAGAAGCAGAGAAACCCGAGCCAGAGATAGCTATTGTGGAAGTTGAATATATTGAATCTGAAAACTTGGATAATGTAGACGATGCTGATGCAGTTCTGAAGTCTGTTTTAGCTGGACTAGAGTCCAAGGACTGGATTTCACTCTGTGATGCTCTTAATAACGTTCGCCGACTTTCGATATTCCACAAGGAAGAAATGATGCATATGCTTGAAAAAGTGATACCACTTGTCGTGAAATCACTGAAAAATCCAAGAAGTGCGGTGTGTAAAACGGCATGCATGACATCTGCAGATATCTTCAGTGCATATAATAATCATATAACAGATCTGTTGGAGCCTCTGCTTACTCAACTACTCCTCAAGTCTTCCCAAGACAAACGGTTTGTTTGCGAGGCAGCAGAGAAAGCTTTAACAGCAATGACCAAATATGTTTCCCCAACCTTGCTGTTACCAAAGCTGCAACCTTGTCTCAAAAACAGGAATCCTCGGATCCGTGCCAAAGCATCATTATGCTTTTCTCGAAGTGTTCCTCGACTGGGCGTTGAAGGGATTAAAGAATATGGAATCGACAAATTAGTTCAAGCAGCCGCATCTCAGCTTAGCGATCAGCTCCCTGAATCCCGTGAGGCTGCACGGACTGTCCTACTAGAACTTCAGAGCGTATATGAAAAAGCTCATCCTCTCATCAACCCTGAGACATCATCACCAGAAGAACAGCAAATCCCGGAGGTAGAGCCAATTACTTGGGAAACTTTCTGCAAGTCAAAACTGTCGGCTCTTAGCGCACAAGCCGTGCTTCGTGTCACCAATGTTGTCACTGTTACTGCTCGGGAGGGTTTGGTTACTACAGGTTCATCATCTTCATCCCAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

346

Amino Acids

38.01

Weight (kDa)

5.73

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CEP104-like_TOG	PF21040	91 - 267	1.3e-07	Centrosomal protein CEP104-like, TOG domain
CLASP_N	PF12348	120 - 277	9.2e-11	CLASP N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01450 AT3G01450 AT3G18530 AT3G18530 AT3G18530 AT5G14790
fragaria_vesca	FvH4_6g50550 FvH4_6g50550
malus_domestica	MD09G1035400.v1.1 MD17G1035600.v1.1
prunus_persica	Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1
pyrus_communis	pycom111g02820
rosa_chinensis	RchiOBHm_Chr2g0171061
rosa_laevigata	RLG00000022000
rosa_multiflora	Rmu_sc0003517.1_g000003 Rmu_sc0007623.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080840
rosa_rugosa	Rorug02G0553400 Rorug02G0553400
rosa_samantha	Rh2AG626900 Rh2BG636900 Rh2CG605800 Rh2DG648500 Rh2DG654000
rosa_wichuraiana	Rw2G051890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1039
AccB7I	CCANNNNNTGG	2 cut(s)	89, 297
AccI	GTMKAC	1 cut(s)	243
AciI	CCGC	2 cut(s)	425, 753
AclI	AACGTT	1 cut(s)	327
AclWI	GGATC	2 cut(s)	649, 662
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	4 cut(s)	132, 284, 448, 803
AdeI	CACNNNGTG	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	89, 297, 701
AgsI	TTSAA	6 cut(s)	19, 212, 221, 377, 710, 746
AloI	GAACNNNNNNTCC	2 cut(s)	870, 902
AluBI	AGCT	9 cut(s)	68, 72, 197, 278, 572, 622, 763, 775, 839
AluI	AGCT	9 cut(s)	68, 72, 197, 278, 572, 622, 763, 775, 839
Alw26I	GTCTC	2 cut(s)	638, 854
AlwI	GGATC	2 cut(s)	649, 662
Ama87I	CYCGRG	2 cut(s)	182, 993
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	560, 622, 749, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	530, 562
AspLEI	GCGC	1 cut(s)	950
AsuC2I	CCSGG	1 cut(s)	890
AsuHPI	GGTGA	2 cut(s)	861, 961
AsuNHI	GCTAGC	1 cut(s)	68
AvaI	CYCGRG	2 cut(s)	182, 993
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	654
BbsI	GAAGAC	2 cut(s)	26, 522
BbvI	GCAGC	4 cut(s)	572, 609, 761, 781
BceAI	ACGGC	2 cut(s)	453, 941
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BcnI	CCSGG	1 cut(s)	890
BcoDI	GTCTC	2 cut(s)	638, 854
BfaI	CTAG	3 cut(s)	69, 284, 812
BfmI	CTRYAG	2 cut(s)	453, 1011
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	5 cut(s)	561, 623, 750, 753, 795
BlpI	GCTNAGC	1 cut(s)	764
BlsI	GCNGC	5 cut(s)	562, 624, 751, 754, 796
Bme1390I	CCNGG	1 cut(s)	890
BmeT110I	CYCGRG	2 cut(s)	182, 993
BmiI	GGNNCC	2 cut(s)	501, 656
BmrFI	CCNGG	1 cut(s)	890
BmrI	ACTGGG	2 cut(s)	710, 1027
BmsI	GCATC	6 cut(s)	238, 244, 304, 354, 677, 764
BmtI	GCTAGC	1 cut(s)	72
BmuI	ACTGGG	2 cut(s)	710, 1027
BoxI	GACNNNNGTC	1 cut(s)	286
BpiI	GAAGAC	2 cut(s)	26, 522
Bpu1102I	GCTNAGC	1 cut(s)	764
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	890
BsaJI	CCNNGG	3 cut(s)	141, 291, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 297, 701
Bse1I	ACTGG	5 cut(s)	6, 150, 302, 705, 1033
Bse3DI	GCAATG	1 cut(s)	588
BseDI	CCNNGG	3 cut(s)	141, 291, 650
BseGI	GGATG	2 cut(s)	841, 1028
BseLI	CCNNNNNNNGG	3 cut(s)	89, 297, 701
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	36, 773, 849
BseNI	ACTGG	5 cut(s)	6, 150, 302, 705, 1033
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	4 cut(s)	572, 609, 761, 781
BsgI	GTGCAG	1 cut(s)	780
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	2 cut(s)	182, 993
BsiSI	CCGG	1 cut(s)	890
BslI	CCNNNNNNNGG	3 cut(s)	89, 297, 701
BsmAI	GTCTC	2 cut(s)	638, 854
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	182, 993
Bsp143I	GATC	3 cut(s)	490, 654, 769
Bsp1720I	GCTNAGC	1 cut(s)	764
BspACI	CCGC	2 cut(s)	425, 753
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	37, 772, 850
BspLI	GGNNCC	2 cut(s)	501, 656
BspMAI	CTGCAG	1 cut(s)	457
BspOI	GCTAGC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	649, 662
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	5 cut(s)	6, 150, 302, 705, 1033
BssECI	CCNNGG	3 cut(s)	141, 291, 650
BssMI	GATC	3 cut(s)	490, 654, 769
BssT1I	CCWWGG	2 cut(s)	141, 291
Bst4CI	ACNGT	5 cut(s)	62, 546, 805, 936, 985
BstC8I	GCNNGC	2 cut(s)	70, 442
BstDEI	CTNAG	5 cut(s)	45, 759, 764, 858, 944
BstF5I	GGATG	2 cut(s)	841, 1028
BstHHI	GCGC	1 cut(s)	950
BstKTI	GATC	3 cut(s)	493, 657, 772
BstMAI	GTCTC	2 cut(s)	638, 854
BstMBI	GATC	3 cut(s)	490, 654, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 578, 947
BstNSI	RCATGY	1 cut(s)	444
BstPAI	GACNNNNGTC	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	888
BstSFI	CTRYAG	2 cut(s)	453, 1011
BstV1I	GCAGC	4 cut(s)	572, 609, 761, 781
BstV2I	GAAGAC	2 cut(s)	26, 522
BstX2I	RGATCY	2 cut(s)	490, 654
BstXI	CCANNNNNNTGG	1 cut(s)	909
BstYI	RGATCY	2 cut(s)	490, 654
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	841, 1028
BtsIMutI	CAGTG	4 cut(s)	157, 404, 472, 981
Cac8I	GCNNGC	2 cut(s)	70, 442
CfoI	GCGC	1 cut(s)	950
CviAII	CATG	4 cut(s)	38, 84, 441, 445
DdeI	CTNAG	5 cut(s)	45, 759, 764, 858, 944
DpnI	GATC	3 cut(s)	492, 656, 771
DpnII	GATC	3 cut(s)	490, 654, 769
DraIII	CACNNNGTG	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	141, 291
Eco32I	GATATC	1 cut(s)	460
Eco57I	CTGAAG	4 cut(s)	132, 284, 448, 803
Eco88I	CYCGRG	2 cut(s)	182, 993
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	141, 291
EcoT22I	ATGCAT	2 cut(s)	369, 446
ErhI	CCWWGG	2 cut(s)	141, 291
FaeI	CATG	4 cut(s)	41, 87, 444, 448
FalI	AAGNNNNNCTT	2 cut(s)	945, 977
FatI	CATG	4 cut(s)	37, 83, 440, 444
FauNDI	CATATG	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	5 cut(s)	561, 623, 750, 753, 795
FokI	GGATG	2 cut(s)	828, 1015
Fsp4HI	GCNGC	5 cut(s)	561, 623, 750, 753, 795
FspBI	CTAG	3 cut(s)	69, 284, 812
GlaI	GCGC	1 cut(s)	949
GluI	GCNGC	5 cut(s)	561, 623, 750, 753, 795
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	890
HhaI	GCGC	1 cut(s)	950
Hin1II	CATG	4 cut(s)	41, 87, 444, 448
Hin6I	GCGC	1 cut(s)	948
HinP1I	GCGC	1 cut(s)	948
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	7 cut(s)	146, 155, 221, 287, 646, 729, 782
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	2 cut(s)	861, 961
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	5 cut(s)	112, 226, 264, 654, 822
Hpy188III	TCNNGA	3 cut(s)	397, 684, 995
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	704
HpyCH4III	ACNGT	5 cut(s)	62, 546, 805, 936, 985
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	8 cut(s)	257, 367, 444, 455, 470, 625, 797, 924
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 578, 947
HpyF3I	CTNAG	5 cut(s)	45, 759, 764, 858, 944
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	4 cut(s)	41, 87, 444, 448
HspAI	GCGC	1 cut(s)	948
Kzo9I	GATC	3 cut(s)	490, 654, 769
LmnI	GCTCC	2 cut(s)	499, 780
Lsp1109I	GCAGC	4 cut(s)	572, 609, 761, 781
LweI	GCATC	6 cut(s)	238, 244, 304, 354, 677, 764
MaeI	CTAG	3 cut(s)	69, 284, 812
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	7 cut(s)	40, 56, 612, 967, 979, 985, 1006
MalI	GATC	3 cut(s)	492, 656, 771
MboI	GATC	3 cut(s)	490, 654, 769
MboII	GAAGA	8 cut(s)	26, 61, 125, 368, 454, 522, 887, 1017
MflI	RGATCY	2 cut(s)	490, 654
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	737, 903
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	477
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	369, 446
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	321, 575, 717
MslI	CAYNNNNRTG	1 cut(s)	673
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	890
MspR9I	CCNGG	1 cut(s)	890
MwoI	GCNNNNNNNGC	3 cut(s)	569, 578, 947
NciI	CCSGG	1 cut(s)	890
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	3 cut(s)	490, 654, 769
NheI	GCTAGC	1 cut(s)	68
NlaIII	CATG	4 cut(s)	41, 87, 444, 448
NlaIV	GGNNCC	2 cut(s)	501, 656
NmuCI	GTSAC	3 cut(s)	56, 967, 979
NsiI	ATGCAT	2 cut(s)	369, 446
NspI	RCATGY	1 cut(s)	444
PaeI	GCATGC	1 cut(s)	444
PfeI	GAWTC	6 cut(s)	146, 155, 221, 646, 729, 782
PflMI	CCANNNNNTGG	2 cut(s)	89, 297
PfoI	TCCNGGA	1 cut(s)	888
PkrI	GCNGC	5 cut(s)	562, 624, 751, 754, 796
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PshAI	GACNNNNGTC	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	1039
Psp1406I	AACGTT	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	501, 656
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	490, 654
RseI	CAYNNNNRTG	1 cut(s)	673
SaqAI	TTAA	3 cut(s)	321, 575, 717
SatI	GCNGC	5 cut(s)	561, 623, 750, 753, 795
Sau3AI	GATC	3 cut(s)	490, 654, 769
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	890
SfaNI	GCATC	6 cut(s)	238, 244, 304, 354, 677, 764
SfcI	CTRYAG	2 cut(s)	453, 1011
SmiMI	CAYNNNNRTG	1 cut(s)	673
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SphI	GCATGC	1 cut(s)	444
Sse9I	AATT	2 cut(s)	737, 903
SsiI	CCGC	2 cut(s)	425, 753
SspMI	CTAG	3 cut(s)	69, 284, 812
StyD4I	CCNGG	1 cut(s)	888
StyI	CCWWGG	2 cut(s)	141, 291
TaaI	ACNGT	5 cut(s)	62, 546, 805, 936, 985
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	4 cut(s)	341, 685, 697, 732
TasI	AATT	2 cut(s)	737, 903
TauI	GCSGC	1 cut(s)	755
TfiI	GAWTC	6 cut(s)	146, 155, 221, 646, 729, 782
Tru1I	TTAA	3 cut(s)	321, 575, 717
Tru9I	TTAA	3 cut(s)	321, 575, 717
TscAI	CASTG	4 cut(s)	157, 411, 472, 988
TseFI	GTSAC	3 cut(s)	56, 967, 979
TseI	GCWGC	4 cut(s)	560, 622, 749, 794
Tsp45I	GTSAC	3 cut(s)	56, 967, 979
TspDTI	ATGAA	6 cut(s)	26, 41, 113, 846, 1008, 1017
TspGWI	ACGGA	2 cut(s)	647, 814
TspRI	CASTG	4 cut(s)	157, 411, 472, 988
Van91I	CCANNNNNTGG	2 cut(s)	89, 297
XceI	RCATGY	1 cut(s)	444
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	3 cut(s)	69, 284, 812
Zsp2I	ATGCAT	2 cut(s)	369, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.