Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0006098

Physical Location & Seq

Genomic Coordinates Forward (+)

1696071 .. 1697724

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02820.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCTTGATATGCTGGGAGATGTAATATTGCTTGTGGTAAAGTCACTTAAGAATCCAAGAAGTGCTGTTTGCAAAACTGCAATTATGACTTCTGCTGATATTTTCAATGCATATACTGATCTTGTGATTGATTCATTGGACCCTATGCTTACACAACTTCTTCTAAAGTCTTCGCAAGACAAACGATTTGTATGTGAGGCAGCTGAGAGAGCTTTAGTAGCGATGACCACTTGGGTTTCCCCTACATTGTTGTTACCCAAGTTGCAACCATATCTGAAGAACAGAAATCCTAGAGTTCGAGCAAAGGCATCAACGTGCTTTTGTCGAAGTGTTCCACGACTGGGTGTTGAAGGTATTAAAGCATATGGGATTGACAAATTAATTCAAATTGCTGCATCCCAGCTTAGTGACCAGCTTCCTGAGTCGAGGGAGGCTGCTCGGATCCTCCTCCTGGAGCTGCAGACTGTTTACGAGAAATTTGATTATCCCCCACCAGCAGCTGTGTCTGAACATCCAGAAACGAGCTCAGCACCAGCGCCTGAGCTCTCAGAAACGAGCTCATGGGAGAACTTTTGTCTGTCAAAGCTCTCGCCTCTCAGTGCACAAGCTGTTCTTCGGGTTACCAGTATATCTCGGGAAGGTCTTGTGGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

219

Amino Acids

23.91

Weight (kDa)

7.58

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01450 AT3G01450 AT3G18530 AT3G18530 AT3G18530 AT5G14790
fragaria_vesca	FvH4_6g50550 FvH4_6g50550
malus_domestica	MD09G1035400.v1.1 MD17G1035600.v1.1
prunus_persica	Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1
pyrus_communis	pycom111g02820
rosa_chinensis	RchiOBHm_Chr2g0171061
rosa_laevigata	RLG00000022000
rosa_multiflora	Rmu_sc0003517.1_g000003 Rmu_sc0007623.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080840
rosa_rugosa	Rorug02G0553400 Rorug02G0553400
rosa_samantha	Rh2AG626900 Rh2BG636900 Rh2CG605800 Rh2DG648500 Rh2DG654000
rosa_wichuraiana	Rw2G051890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	436, 449
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	341, 451
AflII	CTTAAG	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	106, 350, 386
AjnI	CCWGG	1 cut(s)	450
Alw21I	GWGCWC	4 cut(s)	527, 546, 560, 604
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	2 cut(s)	436, 449
AlwNI	CAGNNNCTG	2 cut(s)	500, 539
Ama87I	CYCGRG	1 cut(s)	633
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	5 cut(s)	200, 392, 434, 457, 497
ApoI	RAATTY	1 cut(s)	476
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AseI	ATTAAT	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	604
BamHI	GGATCC	1 cut(s)	441
BanII	GRGCYC	4 cut(s)	527, 546, 560, 653
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	4 cut(s)	527, 546, 560, 604
BbvI	GCAGC	5 cut(s)	212, 379, 421, 444, 509
BciT130I	CCWGG	1 cut(s)	452
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	539
BfrI	CTTAAG	1 cut(s)	47
BisI	GCNGC	5 cut(s)	201, 393, 435, 458, 498
BlpI	GCTNAGC	1 cut(s)	526
BlsI	GCNGC	5 cut(s)	202, 394, 436, 459, 499
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	141, 443
BmrFI	CCNGG	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	317, 404
BmuI	ACTGGG	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 451
Bse1I	ACTGG	2 cut(s)	345, 624
BseBI	CCWGG	1 cut(s)	452
BseGI	GGATG	2 cut(s)	395, 511
BseLI	CCNNNNNNNGG	2 cut(s)	341, 451
BseMII	CTCAG	6 cut(s)	195, 411, 531, 540, 561, 610
BseNI	ACTGG	2 cut(s)	345, 624
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	5 cut(s)	212, 379, 421, 444, 509
BseYI	CCCAGC	2 cut(s)	13, 399
BsiHKAI	GWGCWC	4 cut(s)	527, 546, 560, 604
BsiHKCI	CYCGRG	1 cut(s)	633
BslI	CCNNNNNNNGG	2 cut(s)	341, 451
BsoBI	CYCGRG	1 cut(s)	633
Bsp1286I	GDGCHC	5 cut(s)	527, 546, 560, 604, 653
Bsp143I	GATC	2 cut(s)	118, 441
Bsp1720I	GCTNAGC	1 cut(s)	526
BspCNI	CTCAG	6 cut(s)	196, 412, 532, 539, 560, 609
BspLI	GGNNCC	2 cut(s)	141, 443
BspMAI	CTGCAG	1 cut(s)	462
BspPI	GGATC	2 cut(s)	436, 449
BspTI	CTTAAG	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	345, 624
BssMI	GATC	2 cut(s)	118, 441
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	1 cut(s)	466
BstAFI	CTTAAG	1 cut(s)	47
BstDEI	CTNAG	7 cut(s)	204, 404, 420, 526, 540, 547, 596
BstEII	GGTNACC	1 cut(s)	619
BstF5I	GGATG	2 cut(s)	395, 511
BstH2I	RGCGCY	1 cut(s)	539
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	2 cut(s)	121, 444
BstMBI	GATC	2 cut(s)	118, 441
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 209, 218
BstNI	CCWGG	1 cut(s)	452
BstPI	GGTNACC	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	450
BstSFI	CTRYAG	1 cut(s)	458
BstSLI	GKGCMC	1 cut(s)	604
BstV1I	GCAGC	5 cut(s)	212, 379, 421, 444, 509
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	2 cut(s)	395, 511
BtsIMutI	CAGTG	1 cut(s)	604
CaiI	CAGNNNCTG	2 cut(s)	500, 539
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	139
CviAII	CATG	1 cut(s)	561
DdeI	CTNAG	7 cut(s)	204, 404, 420, 526, 540, 547, 596
DpnI	GATC	2 cut(s)	120, 443
DpnII	GATC	2 cut(s)	118, 441
Ecl136II	GAGCTC	3 cut(s)	525, 544, 558
Eco24I	GRGCYC	4 cut(s)	527, 546, 560, 653
Eco47I	GGWCC	1 cut(s)	139
Eco53kI	GAGCTC	3 cut(s)	525, 544, 558
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	633
Eco91I	GGTNACC	1 cut(s)	619
EcoICRI	GAGCTC	3 cut(s)	525, 544, 558
EcoO65I	GGTNACC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	112
EcoT38I	GRGCYC	4 cut(s)	527, 546, 560, 653
FaeI	CATG	1 cut(s)	564
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FatI	CATG	1 cut(s)	560
FauNDI	CATATG	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	201, 393, 435, 458, 498
FokI	GGATG	2 cut(s)	382, 498
FriOI	GRGCYC	4 cut(s)	527, 546, 560, 653
Fsp4HI	GCNGC	5 cut(s)	201, 393, 435, 458, 498
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	5 cut(s)	201, 393, 435, 458, 498
GsaI	CCCAGC	2 cut(s)	17, 403
GsuI	CTGGAG	1 cut(s)	473
HaeII	RGCGCY	1 cut(s)	539
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	1 cut(s)	564
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HinfI	GANTC	3 cut(s)	52, 131, 422
Hpy166II	GTNNAC	2 cut(s)	469, 602
Hpy188I	TCNGA	4 cut(s)	276, 441, 508, 550
Hpy188III	TCNNGA	4 cut(s)	419, 515, 635, 654
Hpy8I	GTNNAC	2 cut(s)	469, 602
HpyAV	CCTTC	2 cut(s)	344, 632
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	7 cut(s)	72, 80, 110, 265, 395, 460, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 209, 218
HpyF3I	CTNAG	7 cut(s)	204, 404, 420, 526, 540, 547, 596
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	564
HspAI	GCGC	1 cut(s)	536
Kzo9I	GATC	2 cut(s)	118, 441
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	5 cut(s)	212, 379, 421, 444, 509
LweI	GCATC	2 cut(s)	317, 404
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	4 cut(s)	42, 252, 407, 619
MalI	GATC	2 cut(s)	120, 443
MboI	GATC	2 cut(s)	118, 441
MboII	GAAGA	4 cut(s)	152, 162, 289, 605
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	5 cut(s)	527, 546, 560, 604, 653
MluCI	AATT	5 cut(s)	81, 377, 381, 387, 476
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	6 cut(s)	190, 420, 424, 455, 458, 603
Mph1103I	ATGCAT	1 cut(s)	112
MseI	TTAA	3 cut(s)	48, 357, 380
MslI	CAYNNNNRTG	1 cut(s)	313
MspA1I	CMGCKG	2 cut(s)	203, 500
MspCI	CTTAAG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	10, 209, 218
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	2 cut(s)	118, 441
NlaIII	CATG	1 cut(s)	564
NlaIV	GGNNCC	2 cut(s)	141, 443
NmuCI	GTSAC	2 cut(s)	42, 407
NsiI	ATGCAT	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	52, 131
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	5 cut(s)	202, 394, 436, 459, 499
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PshBI	ATTAAT	1 cut(s)	380
Psp124BI	GAGCTC	3 cut(s)	527, 546, 560
Psp6I	CCWGG	1 cut(s)	450
PspEI	GGTNACC	1 cut(s)	619
PspFI	CCCAGC	2 cut(s)	13, 399
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	141, 443
PspPI	GGNCC	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	462
PstNI	CAGNNNCTG	2 cut(s)	500, 539
PsuI	RGATCY	1 cut(s)	441
PvuII	CAGCTG	2 cut(s)	203, 500
RseI	CAYNNNNRTG	1 cut(s)	313
SacI	GAGCTC	3 cut(s)	527, 546, 560
SaqAI	TTAA	3 cut(s)	48, 357, 380
SatI	GCNGC	5 cut(s)	201, 393, 435, 458, 498
Sau3AI	GATC	2 cut(s)	118, 441
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	5 cut(s)	527, 546, 560, 604, 653
SfaNI	GCATC	2 cut(s)	317, 404
SfcI	CTRYAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	5 cut(s)	81, 377, 381, 387, 476
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	3 cut(s)	527, 546, 560
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	3 cut(s)	298, 325, 425
TasI	AATT	5 cut(s)	81, 377, 381, 387, 476
TfiI	GAWTC	2 cut(s)	52, 131
Tru1I	TTAA	3 cut(s)	48, 357, 380
Tru9I	TTAA	3 cut(s)	48, 357, 380
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	2 cut(s)	42, 407
TseI	GCWGC	5 cut(s)	200, 392, 434, 457, 497
Tsp45I	GTSAC	2 cut(s)	42, 407
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	604
Vha464I	CTTAAG	1 cut(s)	47
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	139
VspI	ATTAAT	1 cut(s)	380
XapI	RAATTY	1 cut(s)	476
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.