Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006098

Physical Location & Seq

Genomic Coordinates Forward (+)

78173870 .. 78178565

Gene Structure 4696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG605800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCAGCTCTTAGAGATCTCAATACCATACCTGGATCTGAGAGGAAGAATGAAAGCTGTAGCAAAGGGGTCCTAACTAAACCCTTTGCTGGGATTGCTACAGAAAATCATGAAGAGTGCCAGAAGAAAAACTCTGTCTCTTTGGGTGCCCCTTCTTTTAATGGTGCCCCTTCTACTAATGGTGAGGAAGTTGTGAATGCCGTTGAGGTTGCAAATACAGAAGTAGAATACATTGAGTCTGAGAACTTGAATGATGTAGAAGATGTTGATTTGAGTCTCAAGACACTCTTAACTGGACTAGAGTCTAAAGATTGGGTGCTGCTTTGTGAAGCACTCAATACTGTCCGTCGGTTAGCCATTTTTCACAAGGAAGCTATGCTCGATACACTGGGAGATGTGATTCCACTTGTAGTAAGGTCCCTGAAGAATCCAAGAAGTGCTGTTTGCAAAACTGCAATTATGACATCTGCAGATATCTTCAACGCTTACAATGACAGTATAGTTGATTCATTGGACCCTCTGCTACTGCAACTTCTTCTCAAGTCTTCACAAGACAAACGATTTGTATGCGAGGCAGCTGAAAGAGCTTTAGTAGCAATGACTACATGGGTTTCCCCCACATTGTTGTTACCAATGCTGCAACCATATCTCAAGCACAAAAATCCTAGAATTCGAGCGAAGGCATCAATGTGCTTTTGTCGAAGTGTTCCACGACTGGTAAGAGAAGAGAAATCAGATATATTCATTTGTCTCACTTTGTCTTTTGAAATTTGTCGTGTATTTGCAAGTGACAGATTCCTATTTTCCTTTCTGAGTAACGAAAAACATTTTATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

279

Amino Acids

31.14

Weight (kDa)

5.71

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01450 AT3G01450 AT3G18530 AT3G18530 AT3G18530 AT5G14790
fragaria_vesca	FvH4_6g50550 FvH4_6g50550
malus_domestica	MD09G1035400.v1.1 MD17G1035600.v1.1
prunus_persica	Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1
pyrus_communis	pycom111g02820
rosa_chinensis	RchiOBHm_Chr2g0171061
rosa_laevigata	RLG00000022000
rosa_multiflora	Rmu_sc0003517.1_g000003 Rmu_sc0007623.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080840
rosa_rugosa	Rorug02G0553400 Rorug02G0553400
rosa_samantha	Rh2AG626900 Rh2BG636900 Rh2CG605800 Rh2DG648500 Rh2DG654000
rosa_wichuraiana	Rw2G051890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	146, 164
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	669, 768
AcuI	CTGAAG	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	89, 90
AgsI	TTSAA	3 cut(s)	250, 481, 767
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	5 cut(s)	8, 57, 374, 578, 587
AluI	AGCT	5 cut(s)	8, 57, 374, 578, 587
Alw26I	GTCTC	3 cut(s)	142, 281, 755
AlwI	GGATC	1 cut(s)	43
ApeKI	GCWGC	3 cut(s)	319, 575, 637
ApoI	RAATTY	2 cut(s)	669, 768
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
AspS9I	GGNCC	3 cut(s)	70, 417, 514
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	3 cut(s)	70, 417, 514
BaeGI	GKGCMC	2 cut(s)	151, 169
BanI	GGYRCC	2 cut(s)	146, 164
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	306, 587, 624
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	3 cut(s)	142, 281, 755
BfaI	CTAG	2 cut(s)	299, 666
BfmI	CTRYAG	3 cut(s)	58, 99, 468
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	3 cut(s)	320, 576, 638
BlsI	GCNGC	3 cut(s)	321, 577, 639
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	3 cut(s)	70, 417, 514
BmgT120I	GGNCC	3 cut(s)	70, 417, 514
BmiI	GGNNCC	5 cut(s)	71, 148, 166, 419, 516
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	398
BmsI	GCATC	1 cut(s)	692
BmuI	ACTGGG	1 cut(s)	398
BoxI	GACNNNNGTC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	537
BpuEI	CTTGAG	3 cut(s)	263, 524, 635
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 90
Bse1I	ACTGG	3 cut(s)	298, 393, 720
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	89, 90
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	3 cut(s)	30, 231, 803
BseNI	ACTGG	3 cut(s)	298, 393, 720
BseSI	GKGCMC	2 cut(s)	151, 169
BseXI	GCAGC	3 cut(s)	306, 587, 624
BseYI	CCCAGC	1 cut(s)	89
BshNI	GGYRCC	2 cut(s)	146, 164
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	2 cut(s)	89, 90
BsmAI	GTCTC	3 cut(s)	142, 281, 755
BsmFI	GGGAC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	151, 169
Bsp143I	GATC	2 cut(s)	16, 35
BspCNI	CTCAG	3 cut(s)	31, 232, 804
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	5 cut(s)	71, 148, 166, 419, 516
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	2 cut(s)	146, 164
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	298, 393, 720
BssMI	GATC	2 cut(s)	16, 35
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	343, 497
Bst6I	CTCTTC	2 cut(s)	108, 720
BstDEI	CTNAG	4 cut(s)	11, 39, 240, 812
BstKTI	GATC	2 cut(s)	19, 38
BstMAI	GTCTC	3 cut(s)	142, 281, 755
BstMBI	GATC	2 cut(s)	16, 35
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 584, 593
BstNI	CCWGG	1 cut(s)	33
BstPAI	GACNNNNGTC	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	3 cut(s)	58, 99, 468
BstSLI	GKGCMC	2 cut(s)	151, 169
BstV1I	GCAGC	3 cut(s)	306, 587, 624
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	2 cut(s)	16, 35
BstYI	RGATCY	2 cut(s)	16, 35
BtsIMutI	CAGTG	1 cut(s)	386
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	70, 417, 514
CviAII	CATG	2 cut(s)	110, 606
CviJI	RGCY	6 cut(s)	8, 57, 356, 374, 578, 587
CviKI_1	RGCY	6 cut(s)	8, 57, 356, 374, 578, 587
DdeI	CTNAG	4 cut(s)	11, 39, 240, 812
DpnI	GATC	2 cut(s)	18, 37
DpnII	GATC	2 cut(s)	16, 35
Eam1104I	CTCTTC	2 cut(s)	108, 720
EarI	CTCTTC	2 cut(s)	108, 720
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	3 cut(s)	70, 417, 514
Eco57I	CTGAAG	1 cut(s)	443
EcoO109I	RGGNCCY	2 cut(s)	70, 417
EcoRI	GAATTC	1 cut(s)	669
EcoRII	CCWGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	475
FaeI	CATG	2 cut(s)	113, 609
FaiI	YATR	9 cut(s)	29, 111, 377, 461, 500, 568, 607, 646, 740
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	2 cut(s)	109, 605
Fnu4HI	GCNGC	3 cut(s)	320, 576, 638
Fsp4HI	GCNGC	3 cut(s)	320, 576, 638
FspBI	CTAG	2 cut(s)	299, 666
GluI	GCNGC	3 cut(s)	320, 576, 638
GsaI	CCCAGC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	113, 609
HinfI	GANTC	7 cut(s)	236, 274, 302, 400, 427, 506, 795
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	4 cut(s)	40, 241, 736, 813
Hpy188III	TCNNGA	2 cut(s)	110, 280
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	3 cut(s)	162, 180, 673
HpyCH4III	ACNGT	2 cut(s)	343, 497
HpyCH4V	TGCA	7 cut(s)	212, 447, 455, 470, 529, 640, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 584, 593
HpyF3I	CTNAG	4 cut(s)	11, 39, 240, 812
Hsp92II	CATG	2 cut(s)	113, 609
Kzo9I	GATC	2 cut(s)	16, 35
LpnPI	CCDG	8 cut(s)	18, 45, 75, 134, 279, 374, 434, 701
Lsp1109I	GCAGC	3 cut(s)	306, 587, 624
LweI	GCATC	1 cut(s)	692
MaeI	CTAG	2 cut(s)	299, 666
MaeIII	GTNAC	3 cut(s)	627, 788, 815
MalI	GATC	2 cut(s)	18, 37
MboI	GATC	2 cut(s)	16, 35
MboII	GAAGA	9 cut(s)	58, 125, 136, 272, 436, 469, 527, 537, 737
MflI	RGATCY	2 cut(s)	16, 35
MhlI	GDGCHC	2 cut(s)	151, 169
MluCI	AATT	3 cut(s)	456, 669, 768
MlyI	GAGTC	3 cut(s)	245, 283, 311
MnlI	CCTC	5 cut(s)	36, 178, 199, 528, 565
MseI	TTAA	2 cut(s)	159, 290
MslI	CAYNNNNRTG	1 cut(s)	688
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	95, 584, 593
NdeII	GATC	2 cut(s)	16, 35
NlaIII	CATG	2 cut(s)	113, 609
NlaIV	GGNNCC	5 cut(s)	71, 148, 166, 419, 516
NmuCI	GTSAC	1 cut(s)	788
PagI	TCATGA	1 cut(s)	109
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	4 cut(s)	400, 427, 506, 795
PkrI	GCNGC	3 cut(s)	321, 577, 639
PleI	GAGTC	3 cut(s)	244, 282, 310
PpsI	GAGTC	3 cut(s)	244, 282, 310
PpuMI	RGGWCCY	2 cut(s)	70, 417
PshAI	GACNNNNGTC	1 cut(s)	301
Psp5II	RGGWCCY	2 cut(s)	70, 417
Psp6I	CCWGG	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	5 cut(s)	71, 148, 166, 419, 516
PspPI	GGNCC	3 cut(s)	70, 417, 514
PspPPI	RGGWCCY	2 cut(s)	70, 417
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	2 cut(s)	16, 35
PvuII	CAGCTG	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	688
SaqAI	TTAA	2 cut(s)	159, 290
SatI	GCNGC	3 cut(s)	320, 576, 638
Sau3AI	GATC	2 cut(s)	16, 35
Sau96I	GGNCC	3 cut(s)	70, 417, 514
SchI	GAGTC	3 cut(s)	245, 283, 311
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	2 cut(s)	151, 169
SetI	ASST	8 cut(s)	10, 34, 59, 210, 376, 419, 580, 589
SfaNI	GCATC	1 cut(s)	692
SfcI	CTRYAG	3 cut(s)	58, 99, 468
SinI	GGWCC	3 cut(s)	70, 417, 514
SmiMI	CAYNNNNRTG	1 cut(s)	688
SmlI	CTYRAG	3 cut(s)	278, 539, 650
SmoI	CTYRAG	3 cut(s)	278, 539, 650
Sse9I	AATT	3 cut(s)	456, 669, 768
SspMI	CTAG	2 cut(s)	299, 666
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	343, 497
TaqI	TCGA	3 cut(s)	381, 673, 700
TasI	AATT	3 cut(s)	456, 669, 768
TfiI	GAWTC	4 cut(s)	400, 427, 506, 795
Tru1I	TTAA	2 cut(s)	159, 290
Tru9I	TTAA	2 cut(s)	159, 290
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	3 cut(s)	319, 575, 637
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	4 cut(s)	66, 126, 498, 733
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	3 cut(s)	70, 417, 514
XapI	RAATTY	2 cut(s)	669, 768
XspI	CTAG	2 cut(s)	299, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.