Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003517.1

Orthogroup ID

OG0006098

Physical Location & Seq

Genomic Coordinates Forward (+)

9383 .. 11648

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003517.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgtcagctcttagagatctcaataccatacctggatctgagaggaagaatgaaagctgtagcaaaggggtcctaactaaaccctttgctgggattgctactgaaaatcatgaagagtgccagaagaaaaactctgtctctttgggtgccccttctactaatggtgaggaagttgtgaatgccgttgaggttgcaaatacagaagtagaatacattgagtctgagaatttgaatgatgtagaagatgttgatttgagtctcaagacactcttaactggactagactctaaagattgggtgctgctttgtgaagcactcaatactgtccgtcggttatccatttttcacaaggaagctatgcttgatacactgggagatgtgattccacttgtggtaaggtccctgaagaatccaagaagtgctgtttgcaaaactgcaattatgacatctgcagatatcttcaacgcttacaatgacagtatagttgattcattggaccctctgctactgcaacttcttctcaagtcttcacaagacaaacgatttgtatgcgaggcagctgaaagagctttagtagcaatgactacatgggtttcccccacattgttgttaccaatgctgcaaccatatctcaagcacaaaaatcctagaattcgagcgaaggcatcaatgtgcttttgtcgaagtgttccacgactgggtgttgaaggtactaaagcatatgggattgacaaattaattcaagttgccgcctcccagcttagtgaccagcttcctgaatcaagggaggctgctcgaagcctcctccttgagttgcagactgtttatgagaaatttcagaatctctctccaacagcagtatctgaggagatgcatctcgaggtggactcttgggagaacttctgccaatcgaaactctctccgcttagcgcacaagctgttcttcgggtgaccaatatctctcgggaaggtcttgttgttggctcctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

330

Amino Acids

36.32

Weight (kDa)

5.25

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01450 AT3G01450 AT3G18530 AT3G18530 AT3G18530 AT5G14790
fragaria_vesca	FvH4_6g50550 FvH4_6g50550
malus_domestica	MD09G1035400.v1.1 MD17G1035600.v1.1
prunus_persica	Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1
pyrus_communis	pycom111g02820
rosa_chinensis	RchiOBHm_Chr2g0171061
rosa_laevigata	RLG00000022000
rosa_multiflora	Rmu_sc0003517.1_g000003 Rmu_sc0007623.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080840
rosa_rugosa	Rorug02G0553400 Rorug02G0553400
rosa_samantha	Rh2AG626900 Rh2BG636900 Rh2CG605800 Rh2DG648500 Rh2DG654000
rosa_wichuraiana	Rw2G051890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	2 cut(s)	750, 923
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	3 cut(s)	226, 651, 833
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	3 cut(s)	89, 90, 698
AgsI	TTSAA	4 cut(s)	232, 463, 707, 743
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	8 cut(s)	8, 57, 356, 560, 569, 760, 772, 938
AluI	AGCT	8 cut(s)	8, 57, 356, 560, 569, 760, 772, 938
Alw26I	GTCTC	2 cut(s)	142, 263
AlwI	GGATC	1 cut(s)	43
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	2 cut(s)	878, 963
ApeKI	GCWGC	4 cut(s)	301, 557, 619, 791
ApoI	RAATTY	3 cut(s)	226, 651, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
AseI	ATTAAT	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	932
AspS9I	GGNCC	3 cut(s)	70, 399, 496
AsuHPI	GGTGA	2 cut(s)	176, 961
AvaI	CYCGRG	2 cut(s)	878, 963
AvaII	GGWCC	3 cut(s)	70, 399, 496
BaeGI	GKGCMC	1 cut(s)	151
BaeI	ACNNNNGTAYC	2 cut(s)	843, 876
BanI	GGYRCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	519
BbvI	GCAGC	4 cut(s)	288, 569, 606, 778
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	142, 263
BfaI	CTAG	2 cut(s)	281, 648
BfmI	CTRYAG	2 cut(s)	58, 450
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	5 cut(s)	302, 558, 620, 750, 792
BlpI	GCTNAGC	1 cut(s)	926
BlsI	GCNGC	5 cut(s)	303, 559, 621, 751, 793
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	3 cut(s)	70, 399, 496
BmeT110I	CYCGRG	2 cut(s)	878, 963
BmgT120I	GGNCC	3 cut(s)	70, 399, 496
BmiI	GGNNCC	5 cut(s)	71, 148, 401, 498, 985
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	2 cut(s)	380, 707
BmsI	GCATC	3 cut(s)	674, 861, 883
BmuI	ACTGGG	2 cut(s)	380, 707
BpiI	GAAGAC	1 cut(s)	519
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
Bpu1102I	GCTNAGC	1 cut(s)	926
BpuEI	CTTGAG	4 cut(s)	245, 506, 617, 830
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 90, 698
Bse1I	ACTGG	3 cut(s)	280, 375, 702
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	3 cut(s)	89, 90, 698
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	3 cut(s)	30, 213, 855
BseNI	ACTGG	3 cut(s)	280, 375, 702
BseRI	GAGGAG	3 cut(s)	794, 881, 976
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	4 cut(s)	288, 569, 606, 778
BseYI	CCCAGC	2 cut(s)	89, 756
BshNI	GGYRCC	1 cut(s)	146
BsiHKCI	CYCGRG	2 cut(s)	878, 963
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	89, 90, 698
BsmAI	GTCTC	2 cut(s)	142, 263
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	1 cut(s)	184
BsoBI	CYCGRG	2 cut(s)	878, 963
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	16, 35
Bsp1720I	GCTNAGC	1 cut(s)	926
BspACI	CCGC	2 cut(s)	750, 923
BspCNI	CTCAG	3 cut(s)	31, 214, 856
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	5 cut(s)	71, 148, 401, 498, 985
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	3 cut(s)	280, 375, 702
BssMI	GATC	2 cut(s)	16, 35
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	325, 479, 823
Bst6I	CTCTTC	1 cut(s)	108
BstDEI	CTNAG	6 cut(s)	11, 39, 222, 761, 864, 926
BstEII	GGTNACC	1 cut(s)	949
BstHHI	GCGC	1 cut(s)	932
BstKTI	GATC	2 cut(s)	19, 38
BstMAI	GTCTC	2 cut(s)	142, 263
BstMBI	GATC	2 cut(s)	16, 35
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 566, 575
BstNI	CCWGG	1 cut(s)	33
BstPI	GGTNACC	1 cut(s)	949
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	2 cut(s)	58, 450
BstSLI	GKGCMC	1 cut(s)	151
BstV1I	GCAGC	4 cut(s)	288, 569, 606, 778
BstV2I	GAAGAC	1 cut(s)	519
BstX2I	RGATCY	2 cut(s)	16, 35
BstYI	RGATCY	2 cut(s)	16, 35
BtsIMutI	CAGTG	1 cut(s)	368
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	932
Cfr13I	GGNCC	3 cut(s)	70, 399, 496
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	2 cut(s)	110, 588
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	6 cut(s)	11, 39, 222, 761, 864, 926
DpnI	GATC	2 cut(s)	18, 37
DpnII	GATC	2 cut(s)	16, 35
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	457
Eco47I	GGWCC	3 cut(s)	70, 399, 496
Eco57I	CTGAAG	1 cut(s)	425
Eco88I	CYCGRG	2 cut(s)	878, 963
Eco91I	GGTNACC	1 cut(s)	949
EcoO109I	RGGNCCY	2 cut(s)	70, 399
EcoO65I	GGTNACC	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	651
EcoRII	CCWGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	876
FaeI	CATG	2 cut(s)	113, 591
FalI	AAGNNNNNCTT	6 cut(s)	254, 286, 345, 377, 927, 959
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	2 cut(s)	109, 587
FauNDI	CATATG	1 cut(s)	721
Fnu4HI	GCNGC	5 cut(s)	302, 558, 620, 750, 792
Fsp4HI	GCNGC	5 cut(s)	302, 558, 620, 750, 792
FspBI	CTAG	2 cut(s)	281, 648
GlaI	GCGC	1 cut(s)	931
GluI	GCNGC	5 cut(s)	302, 558, 620, 750, 792
GsaI	CCCAGC	2 cut(s)	93, 760
HhaI	GCGC	1 cut(s)	932
Hin1II	CATG	2 cut(s)	113, 591
Hin6I	GCGC	1 cut(s)	930
HinP1I	GCGC	1 cut(s)	930
HinfI	GANTC	9 cut(s)	218, 256, 284, 382, 409, 488, 779, 841, 887
HphI	GGTGA	2 cut(s)	176, 961
Hpy166II	GTNNAC	1 cut(s)	886
Hpy188I	TCNGA	4 cut(s)	40, 223, 840, 865
Hpy188III	TCNNGA	6 cut(s)	110, 262, 776, 878, 965, 990
Hpy8I	GTNNAC	1 cut(s)	886
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	4 cut(s)	162, 655, 701, 962
HpyCH4III	ACNGT	3 cut(s)	325, 479, 823
HpyCH4V	TGCA	8 cut(s)	194, 429, 437, 452, 511, 622, 817, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 566, 575
HpyF3I	CTNAG	6 cut(s)	11, 39, 222, 761, 864, 926
Hsp92II	CATG	2 cut(s)	113, 591
HspAI	GCGC	1 cut(s)	930
Kzo9I	GATC	2 cut(s)	16, 35
LmnI	GCTCC	1 cut(s)	989
Lsp1109I	GCAGC	4 cut(s)	288, 569, 606, 778
LweI	GCATC	3 cut(s)	674, 861, 883
MaeI	CTAG	2 cut(s)	281, 648
MaeIII	GTNAC	3 cut(s)	609, 764, 949
MalI	GATC	2 cut(s)	18, 37
MboI	GATC	2 cut(s)	16, 35
MboII	GAAGA	9 cut(s)	58, 125, 136, 254, 418, 451, 509, 519, 935
MflI	RGATCY	2 cut(s)	16, 35
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	6 cut(s)	226, 438, 651, 734, 738, 833
MlyI	GAGTC	4 cut(s)	227, 265, 278, 881
MmeI	TCCRAC	1 cut(s)	875
Mph1103I	ATGCAT	1 cut(s)	876
MseI	TTAA	2 cut(s)	272, 737
MslI	CAYNNNNRTG	1 cut(s)	670
MspA1I	CMGCKG	1 cut(s)	560
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	95, 566, 575
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	2 cut(s)	16, 35
NlaIII	CATG	2 cut(s)	113, 591
NlaIV	GGNNCC	5 cut(s)	71, 148, 401, 498, 985
NmuCI	GTSAC	2 cut(s)	764, 949
NsiI	ATGCAT	1 cut(s)	876
PaeR7I	CTCGAG	1 cut(s)	878
PagI	TCATGA	1 cut(s)	109
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	5 cut(s)	382, 409, 488, 779, 841
PkrI	GCNGC	5 cut(s)	303, 559, 621, 751, 793
PleI	GAGTC	4 cut(s)	226, 264, 278, 881
PpsI	GAGTC	4 cut(s)	226, 264, 278, 881
PpuMI	RGGWCCY	2 cut(s)	70, 399
PshBI	ATTAAT	1 cut(s)	737
Psp5II	RGGWCCY	2 cut(s)	70, 399
Psp6I	CCWGG	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	949
PspFI	CCCAGC	2 cut(s)	89, 756
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	5 cut(s)	71, 148, 401, 498, 985
PspPI	GGNCC	3 cut(s)	70, 399, 496
PspPPI	RGGWCCY	2 cut(s)	70, 399
PstI	CTGCAG	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	2 cut(s)	16, 35
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
RseI	CAYNNNNRTG	1 cut(s)	670
SaqAI	TTAA	2 cut(s)	272, 737
SatI	GCNGC	5 cut(s)	302, 558, 620, 750, 792
Sau3AI	GATC	2 cut(s)	16, 35
Sau96I	GGNCC	3 cut(s)	70, 399, 496
SchI	GAGTC	4 cut(s)	227, 265, 278, 881
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	3 cut(s)	674, 861, 883
SfcI	CTRYAG	2 cut(s)	58, 450
Sfr274I	CTCGAG	1 cut(s)	878
SinI	GGWCC	3 cut(s)	70, 399, 496
SlaI	CTCGAG	1 cut(s)	878
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	5 cut(s)	260, 521, 632, 809, 878
SmoI	CTYRAG	5 cut(s)	260, 521, 632, 809, 878
Sse9I	AATT	6 cut(s)	226, 438, 651, 734, 738, 833
SsiI	CCGC	2 cut(s)	750, 923
SspMI	CTAG	2 cut(s)	281, 648
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	325, 479, 823
TaqI	TCGA	5 cut(s)	655, 682, 796, 879, 911
TasI	AATT	6 cut(s)	226, 438, 651, 734, 738, 833
TauI	GCSGC	1 cut(s)	752
TfiI	GAWTC	5 cut(s)	382, 409, 488, 779, 841
Tru1I	TTAA	2 cut(s)	272, 737
Tru9I	TTAA	2 cut(s)	272, 737
TscAI	CASTG	1 cut(s)	375
TseFI	GTSAC	2 cut(s)	764, 949
TseI	GCWGC	4 cut(s)	301, 557, 619, 791
Tsp45I	GTSAC	2 cut(s)	764, 949
TspDTI	ATGAA	3 cut(s)	66, 126, 480
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	375
VpaK11BI	GGWCC	3 cut(s)	70, 399, 496
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	3 cut(s)	226, 651, 833
XhoI	CTCGAG	1 cut(s)	878
XspI	CTAG	2 cut(s)	281, 648
Zsp2I	ATGCAT	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.