Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007623.1

Orthogroup ID

OG0006098

Physical Location & Seq

Genomic Coordinates Reverse (-)

14917 .. 17223

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007623.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgtcagctcttagagatctcaataccatacctggatctgagaggaagaatgaaagctgtagcaaaggggtcctaactaaaccctttgctgggattgctactgaaaatcatgaagagtgccagaagaaaaactctgtctctttgggtgccccttctactaatggtgccccttctactaatggtgaggaagttgtgaatgccgttgaggttgcaaatacagaagtagaatacattgagtctgagaacttgaatgatgtagaagatgttgatttgagtctcaagacactcttaactggactagagtctaaagattgggtgctgctttgtgaagcactcaatactgtccgtcggttatccatttttcacaaggaagctatgctcgatacactgggagatgtgattccacttgtagtaaggtccctgaagaatccaagaagtgctgtttgcaaaactgcaattatgacatctgcagatatcttcaacgcttacaatgacagtatagttgattcattggaccctctgctactgcaacttcttctcaagtcttcacaagacaaacgatttgtatgcgaggcagctgaaagagctttagtagcaatgactacatgggtttcccccacattgttgttaccaatgctgcaaccatatctcaagcacaaaaatcctagaattcgagcgaaggcatcaatgtgcttttgtcgtagtgttccacgactgggtgttgaaggtactaaagcatatgggattgacaaattaattcaagttgccgcctcccagcttagtgaccagcttcctgaatcaagggaggctgctcgaagcctcctccttgagttgcagactgtttatgagaaatttcagaatctctctccaacagcagtatctgaggagatgcaaccagaggtggactcttgggagaacttctgccaatcgaaactatctccgcttagcgcacaagctgttcttcgggtgaccaatatctctcgggaaggtcttgttgttggctcctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

336

Amino Acids

36.84

Weight (kDa)

5.18

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01450 AT3G01450 AT3G18530 AT3G18530 AT3G18530 AT5G14790
fragaria_vesca	FvH4_6g50550 FvH4_6g50550
malus_domestica	MD09G1035400.v1.1 MD17G1035600.v1.1
prunus_persica	Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1
pyrus_communis	pycom111g02820
rosa_chinensis	RchiOBHm_Chr2g0171061
rosa_laevigata	RLG00000022000
rosa_multiflora	Rmu_sc0003517.1_g000003 Rmu_sc0007623.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080840
rosa_rugosa	Rorug02G0553400 Rorug02G0553400
rosa_samantha	Rh2AG626900 Rh2BG636900 Rh2CG605800 Rh2DG648500 Rh2DG654000
rosa_wichuraiana	Rw2G051890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	146, 164
AciI	CCGC	2 cut(s)	768, 941
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	669, 851
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	3 cut(s)	89, 90, 716
AgsI	TTSAA	4 cut(s)	250, 481, 725, 761
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	8 cut(s)	8, 57, 374, 578, 587, 778, 790, 956
AluI	AGCT	8 cut(s)	8, 57, 374, 578, 587, 778, 790, 956
Alw26I	GTCTC	2 cut(s)	142, 281
AlwI	GGATC	1 cut(s)	43
AlwNI	CAGNNNCTG	1 cut(s)	881
Ama87I	CYCGRG	1 cut(s)	981
ApeKI	GCWGC	4 cut(s)	319, 575, 637, 809
ApoI	RAATTY	2 cut(s)	669, 851
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
AseI	ATTAAT	1 cut(s)	755
AspLEI	GCGC	1 cut(s)	950
AspS9I	GGNCC	3 cut(s)	70, 417, 514
AsuHPI	GGTGA	2 cut(s)	194, 979
AvaI	CYCGRG	1 cut(s)	981
AvaII	GGWCC	3 cut(s)	70, 417, 514
BaeGI	GKGCMC	2 cut(s)	151, 169
BaeI	ACNNNNGTAYC	2 cut(s)	861, 894
BanI	GGYRCC	2 cut(s)	146, 164
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	306, 587, 624, 796
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	142, 281
BfaI	CTAG	2 cut(s)	299, 666
BfmI	CTRYAG	2 cut(s)	58, 468
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	5 cut(s)	320, 576, 638, 768, 810
BlpI	GCTNAGC	1 cut(s)	944
BlsI	GCNGC	5 cut(s)	321, 577, 639, 769, 811
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	3 cut(s)	70, 417, 514
BmeT110I	CYCGRG	1 cut(s)	981
BmgT120I	GGNCC	3 cut(s)	70, 417, 514
BmiI	GGNNCC	6 cut(s)	71, 148, 166, 419, 516, 1003
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	2 cut(s)	398, 725
BmsI	GCATC	2 cut(s)	692, 879
BmuI	ACTGGG	2 cut(s)	398, 725
BoxI	GACNNNNGTC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	537
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
Bpu1102I	GCTNAGC	1 cut(s)	944
BpuEI	CTTGAG	4 cut(s)	263, 524, 635, 848
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 90, 716
Bse1I	ACTGG	3 cut(s)	298, 393, 720
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	3 cut(s)	89, 90, 716
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	3 cut(s)	30, 231, 873
BseNI	ACTGG	3 cut(s)	298, 393, 720
BseRI	GAGGAG	3 cut(s)	812, 899, 994
BseSI	GKGCMC	2 cut(s)	151, 169
BseXI	GCAGC	4 cut(s)	306, 587, 624, 796
BseYI	CCCAGC	2 cut(s)	89, 774
BshNI	GGYRCC	2 cut(s)	146, 164
BsiHKCI	CYCGRG	1 cut(s)	981
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	3 cut(s)	89, 90, 716
BsmAI	GTCTC	2 cut(s)	142, 281
BsmFI	GGGAC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	981
Bsp1286I	GDGCHC	2 cut(s)	151, 169
Bsp143I	GATC	2 cut(s)	16, 35
Bsp1720I	GCTNAGC	1 cut(s)	944
BspACI	CCGC	2 cut(s)	768, 941
BspCNI	CTCAG	3 cut(s)	31, 232, 874
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	6 cut(s)	71, 148, 166, 419, 516, 1003
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	2 cut(s)	146, 164
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	298, 393, 720
BssMI	GATC	2 cut(s)	16, 35
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	343, 497, 841
Bst6I	CTCTTC	1 cut(s)	108
BstDEI	CTNAG	6 cut(s)	11, 39, 240, 779, 882, 944
BstEII	GGTNACC	1 cut(s)	967
BstHHI	GCGC	1 cut(s)	950
BstKTI	GATC	2 cut(s)	19, 38
BstMAI	GTCTC	2 cut(s)	142, 281
BstMBI	GATC	2 cut(s)	16, 35
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 584, 593
BstNI	CCWGG	1 cut(s)	33
BstPAI	GACNNNNGTC	1 cut(s)	301
BstPI	GGTNACC	1 cut(s)	967
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	2 cut(s)	58, 468
BstSLI	GKGCMC	2 cut(s)	151, 169
BstV1I	GCAGC	4 cut(s)	306, 587, 624, 796
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	2 cut(s)	16, 35
BstYI	RGATCY	2 cut(s)	16, 35
BtsIMutI	CAGTG	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	881
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	950
Cfr13I	GGNCC	3 cut(s)	70, 417, 514
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	2 cut(s)	110, 606
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	6 cut(s)	11, 39, 240, 779, 882, 944
DpnI	GATC	2 cut(s)	18, 37
DpnII	GATC	2 cut(s)	16, 35
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	3 cut(s)	70, 417, 514
Eco57I	CTGAAG	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	981
Eco91I	GGTNACC	1 cut(s)	967
EcoO109I	RGGNCCY	2 cut(s)	70, 417
EcoO65I	GGTNACC	1 cut(s)	967
EcoRI	GAATTC	1 cut(s)	669
EcoRII	CCWGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	475
FaeI	CATG	2 cut(s)	113, 609
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 945, 977
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	2 cut(s)	109, 605
FauNDI	CATATG	1 cut(s)	739
Fnu4HI	GCNGC	5 cut(s)	320, 576, 638, 768, 810
Fsp4HI	GCNGC	5 cut(s)	320, 576, 638, 768, 810
FspBI	CTAG	2 cut(s)	299, 666
GlaI	GCGC	1 cut(s)	949
GluI	GCNGC	5 cut(s)	320, 576, 638, 768, 810
GsaI	CCCAGC	2 cut(s)	93, 778
HhaI	GCGC	1 cut(s)	950
Hin1II	CATG	2 cut(s)	113, 609
Hin6I	GCGC	1 cut(s)	948
HinP1I	GCGC	1 cut(s)	948
HinfI	GANTC	9 cut(s)	236, 274, 302, 400, 427, 506, 797, 859, 905
HphI	GGTGA	2 cut(s)	194, 979
Hpy166II	GTNNAC	1 cut(s)	904
Hpy188I	TCNGA	4 cut(s)	40, 241, 858, 883
Hpy188III	TCNNGA	5 cut(s)	110, 280, 794, 983, 1008
Hpy8I	GTNNAC	1 cut(s)	904
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	5 cut(s)	162, 180, 673, 719, 980
HpyCH4III	ACNGT	3 cut(s)	343, 497, 841
HpyCH4V	TGCA	8 cut(s)	212, 447, 455, 470, 529, 640, 835, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 584, 593
HpyF3I	CTNAG	6 cut(s)	11, 39, 240, 779, 882, 944
Hsp92II	CATG	2 cut(s)	113, 609
HspAI	GCGC	1 cut(s)	948
Kzo9I	GATC	2 cut(s)	16, 35
LmnI	GCTCC	1 cut(s)	1007
Lsp1109I	GCAGC	4 cut(s)	306, 587, 624, 796
LweI	GCATC	2 cut(s)	692, 879
MaeI	CTAG	2 cut(s)	299, 666
MaeIII	GTNAC	3 cut(s)	627, 782, 967
MalI	GATC	2 cut(s)	18, 37
MboI	GATC	2 cut(s)	16, 35
MboII	GAAGA	9 cut(s)	58, 125, 136, 272, 436, 469, 527, 537, 953
MflI	RGATCY	2 cut(s)	16, 35
MhlI	GDGCHC	2 cut(s)	151, 169
MluCI	AATT	5 cut(s)	456, 669, 752, 756, 851
MlyI	GAGTC	4 cut(s)	245, 283, 311, 899
MmeI	TCCRAC	1 cut(s)	893
MseI	TTAA	2 cut(s)	290, 755
MslI	CAYNNNNRTG	1 cut(s)	688
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	95, 584, 593
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	2 cut(s)	16, 35
NlaIII	CATG	2 cut(s)	113, 609
NlaIV	GGNNCC	6 cut(s)	71, 148, 166, 419, 516, 1003
NmuCI	GTSAC	2 cut(s)	782, 967
PagI	TCATGA	1 cut(s)	109
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	5 cut(s)	400, 427, 506, 797, 859
PkrI	GCNGC	5 cut(s)	321, 577, 639, 769, 811
PleI	GAGTC	4 cut(s)	244, 282, 310, 899
PpsI	GAGTC	4 cut(s)	244, 282, 310, 899
PpuMI	RGGWCCY	2 cut(s)	70, 417
PshAI	GACNNNNGTC	1 cut(s)	301
PshBI	ATTAAT	1 cut(s)	755
Psp5II	RGGWCCY	2 cut(s)	70, 417
Psp6I	CCWGG	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	967
PspFI	CCCAGC	2 cut(s)	89, 774
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	6 cut(s)	71, 148, 166, 419, 516, 1003
PspPI	GGNCC	3 cut(s)	70, 417, 514
PspPPI	RGGWCCY	2 cut(s)	70, 417
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	881
PsuI	RGATCY	2 cut(s)	16, 35
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
RseI	CAYNNNNRTG	1 cut(s)	688
SaqAI	TTAA	2 cut(s)	290, 755
SatI	GCNGC	5 cut(s)	320, 576, 638, 768, 810
Sau3AI	GATC	2 cut(s)	16, 35
Sau96I	GGNCC	3 cut(s)	70, 417, 514
SchI	GAGTC	4 cut(s)	245, 283, 311, 899
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	2 cut(s)	151, 169
SfaNI	GCATC	2 cut(s)	692, 879
SfcI	CTRYAG	2 cut(s)	58, 468
SinI	GGWCC	3 cut(s)	70, 417, 514
SmiMI	CAYNNNNRTG	1 cut(s)	688
SmlI	CTYRAG	4 cut(s)	278, 539, 650, 827
SmoI	CTYRAG	4 cut(s)	278, 539, 650, 827
Sse9I	AATT	5 cut(s)	456, 669, 752, 756, 851
SsiI	CCGC	2 cut(s)	768, 941
SspMI	CTAG	2 cut(s)	299, 666
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	343, 497, 841
TaqI	TCGA	4 cut(s)	381, 673, 814, 929
TasI	AATT	5 cut(s)	456, 669, 752, 756, 851
TauI	GCSGC	1 cut(s)	770
TfiI	GAWTC	5 cut(s)	400, 427, 506, 797, 859
Tru1I	TTAA	2 cut(s)	290, 755
Tru9I	TTAA	2 cut(s)	290, 755
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	2 cut(s)	782, 967
TseI	GCWGC	4 cut(s)	319, 575, 637, 809
Tsp45I	GTSAC	2 cut(s)	782, 967
TspDTI	ATGAA	3 cut(s)	66, 126, 498
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	3 cut(s)	70, 417, 514
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	2 cut(s)	669, 851
XspI	CTAG	2 cut(s)	299, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.