AT3G18530
ERF Family

BEST Arabidopsis thaliana protein match is ARM repeat superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006098
Physical Location & Seq
Reverse (-)
6373525 .. 6375723
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18530.1

Sequence Viewer

Length: 1086 bp
ATGGCTGCTAAGGCTTTAAAAGATTTGAAGAATCTTCCTGTCTCTGAGAGGAATATTGACTGTAAAAAAAATCCTTGTGCTGGCAAAATGAATGGAAAAGCTGAAGATAGACCACCACAAAACTCTGTCCCCTTGGATCACAATCATCCTACAGGCGATGAGATAGAGAAACCTGAGGCAGAAAGAGTTATCGTAGAACTTGAGTATATCAAATCCAAAGACTTGAACAATGTAGCTGAAGTTGATGCAGTTCTCAAGGTATCAATTGTTCTTTCCTGGTATTATACTATGCTTTACTGTGACTTCTCATTTTCACTTGACCGTTCGTCGTCTTTCCATTTTCCACAAGGAAGAAATGCTGCATTTGCTAAAGTGATCCTGTTTGTCGTGAAATCATTGAAGAACCCAAGAAGTGCTGTAAGTAAAACCGCATGTATGACATCTGAAGACATCTTCAGCTCATATAATGACCATATATTCGATCAATTGGATCGCCTGCTTACTCAACTCCTCCTTAAATCTTCCCAAGACAAGCGATTTGTTTGTGAAGCAGCGGAAAGAGCATTAGTAGCAATGACTACACATGTTTCTCCTGCCTTGCTGTTGCCAAAGCTTCGACCTTGTCTCAAGAATAAGAGTCCTCGGATCCGCGCAAAAGCATCTGCGTGCTTCTCCGGATGTGTTCCCCGACTGGGCATTGAAGGCATGAGAGAATATGGAATTGAGACCAACTCCCAGAATCTCAGGAGGCTGCACGGACAGTCTTCCTGGAACTTGAGACAGTGTATAAGAAAACTACTCCTGTCGAACCCGAGGAGGAGAATCCAGAGGCAGCCACTTGGCCAATCTTCTGCCAATCAAACCTCTCACCTCTTAGTGCACAGGCTGTGCTTCGTGTCACCAATGTCACTGGTGAGGCTCGAGAGGGTCTTGTTACGGGTTCATGACACGAGCCCTCATTACGTCCCTTGTTCATTATATAAGTTATCTAGAGACCAGTACTTCTATACATATTGGGTTGTGATTCTGTTTACTCCTAAGAATAAATATGGAATGTTTTTTGTACCAAGGCAAAAAGTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

361

Amino Acids

41.34

Weight (kDa)

9.64

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLASP_N PF12348 124 - 220 3.1e-06 CLASP N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 651
AccIII TCCGGA 1 cut(s) 674
AciI CCGC 3 cut(s) 429, 554, 649
AclWI GGATC 5 cut(s) 144, 370, 498, 640, 653
AcoI YGGCCR 1 cut(s) 841
AcuI CTGAAG 4 cut(s) 123, 258, 439, 465
AfaI GTAC 2 cut(s) 1001, 1065
AfiI CCNNNNNNNGG 2 cut(s) 80, 692
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 4 cut(s) 28, 226, 400, 701
AhdI GACNNNNNGTC 1 cut(s) 325
AjnI CCWGG 2 cut(s) 275, 767
AluBI AGCT 4 cut(s) 101, 236, 459, 613
AluI AGCT 4 cut(s) 101, 236, 459, 613
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 5 cut(s) 46, 629, 719, 772, 987
Alw44I GTGCAC 1 cut(s) 878
AlwI GGATC 5 cut(s) 144, 370, 498, 640, 653
Ama87I CYCGRG 2 cut(s) 811, 920
Aor13HI TCCGGA 1 cut(s) 674
AoxI GGCC 1 cut(s) 841
ApaLI GTGCAC 1 cut(s) 878
ApeKI GCWGC 5 cut(s) 5, 359, 551, 751, 832
ArsI GACNNNNNNTTYG 4 cut(s) 461, 493, 521, 553
AspLEI GCGC 1 cut(s) 653
AsuHPI GGTGA 3 cut(s) 860, 891, 925
AvaI CYCGRG 2 cut(s) 811, 920
AxyI CCTNAGG 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 882
BalI TGGCCA 1 cut(s) 843
BamHI GGATCC 1 cut(s) 645
BanII GRGCYC 1 cut(s) 956
BauI CACGAG 1 cut(s) 949
BbsI GAAGAC 2 cut(s) 453, 756
Bbv12I GWGCWC 1 cut(s) 882
BbvI GCAGC 4 cut(s) 346, 563, 738, 844
BciT130I CCWGG 2 cut(s) 277, 769
BcoDI GTCTC 5 cut(s) 46, 629, 719, 772, 987
BfaI CTAG 1 cut(s) 990
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 5 cut(s) 6, 360, 552, 752, 833
BlsI GCNGC 5 cut(s) 7, 361, 553, 753, 834
BmcAI AGTACT 1 cut(s) 1001
Bme1390I CCNGG 2 cut(s) 277, 769
BmeRI GACNNNNNGTC 1 cut(s) 325
BmeT110I CYCGRG 2 cut(s) 811, 920
BmiI GGNNCC 1 cut(s) 647
BmrFI CCNGG 2 cut(s) 277, 769
BmrI ACTGGG 1 cut(s) 701
BmsI GCATC 2 cut(s) 235, 668
BmuI ACTGGG 1 cut(s) 701
BpiI GAAGAC 2 cut(s) 453, 756
BplI GAGNNNNNCTC 2 cut(s) 716, 748
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 4 cut(s) 221, 239, 611, 796
BsaBI GATNNNNATC 1 cut(s) 141
BsaI GGTCTC 2 cut(s) 719, 987
BsaJI CCNNGG 4 cut(s) 132, 641, 812, 1067
BsaWI WCCGGW 1 cut(s) 674
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 692
Bse1I ACTGG 3 cut(s) 696, 915, 997
Bse21I CCTNAGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 579
Bse8I GATNNNNATC 1 cut(s) 141
BseAI TCCGGA 1 cut(s) 674
BseBI CCWGG 2 cut(s) 277, 769
BseDI CCNNGG 4 cut(s) 132, 641, 812, 1067
BseGI GGATG 2 cut(s) 145, 683
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 80, 692
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 3 cut(s) 36, 165, 757
BseNI ACTGG 3 cut(s) 696, 915, 997
BseRI GAGGAG 3 cut(s) 500, 829, 832
BseSI GKGCMC 1 cut(s) 882
BseXI GCAGC 4 cut(s) 346, 563, 738, 844
BsgI GTGCAG 1 cut(s) 737
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 1 cut(s) 843
BsiHKAI GWGCWC 1 cut(s) 882
BsiHKCI CYCGRG 2 cut(s) 811, 920
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 2 cut(s) 113, 950
BslI CCNNNNNNNGG 2 cut(s) 80, 692
BsmAI GTCTC 5 cut(s) 46, 629, 719, 772, 987
BsmFI GGGAC 2 cut(s) 113, 950
BsnI GGCC 1 cut(s) 843
Bso31I GGTCTC 2 cut(s) 719, 987
BsoBI CYCGRG 2 cut(s) 811, 920
Bsp1286I GDGCHC 2 cut(s) 882, 956
Bsp13I TCCGGA 1 cut(s) 674
Bsp143I GATC 5 cut(s) 136, 375, 481, 490, 645
BspACI CCGC 3 cut(s) 429, 554, 649
BspANI GGCC 1 cut(s) 843
BspCNI CTCAG 3 cut(s) 37, 166, 756
BspEI TCCGGA 1 cut(s) 674
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 1 cut(s) 647
BspPI GGATC 5 cut(s) 144, 370, 498, 640, 653
BspTNI GGTCTC 2 cut(s) 719, 987
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 3 cut(s) 696, 915, 997
BssECI CCNNGG 4 cut(s) 132, 641, 812, 1067
BssMI GATC 5 cut(s) 136, 375, 481, 490, 645
BssSI CACGAG 1 cut(s) 949
BssT1I CCWWGG 2 cut(s) 132, 1067
Bst2BI CACGAG 1 cut(s) 949
Bst2UI CCWGG 2 cut(s) 277, 769
Bst4CI ACNGT 5 cut(s) 62, 299, 323, 762, 783
BstC8I GCNNGC 3 cut(s) 82, 497, 667
BstDEI CTNAG 6 cut(s) 9, 45, 174, 743, 874, 1038
BstF5I GGATG 2 cut(s) 145, 683
BstFNI CGCG 1 cut(s) 651
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 5 cut(s) 139, 378, 484, 493, 648
BstMAI GTCTC 5 cut(s) 46, 629, 719, 772, 987
BstMBI GATC 5 cut(s) 136, 375, 481, 490, 645
BstMWI GCNNNNNNNGC 5 cut(s) 11, 365, 560, 569, 702
BstNI CCWGG 2 cut(s) 277, 769
BstNSI RCATGY 2 cut(s) 435, 587
BstSCI CCNGG 2 cut(s) 275, 767
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 882
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 4 cut(s) 346, 563, 738, 844
BstV2I GAAGAC 2 cut(s) 453, 756
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
Bsu36I CCTNAGG 1 cut(s) 174
BsuRI GGCC 1 cut(s) 843
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 2 cut(s) 145, 683
BtsIMutI CAGTG 2 cut(s) 788, 908
Cac8I GCNNGC 3 cut(s) 82, 497, 667
CciI TCATGA 1 cut(s) 943
CfoI GCGC 1 cut(s) 653
Csp6I GTAC 2 cut(s) 1000, 1064
CviAII CATG 4 cut(s) 432, 584, 706, 944
CviQI GTAC 2 cut(s) 1000, 1064
DdeI CTNAG 6 cut(s) 9, 45, 174, 743, 874, 1038
DpnI GATC 5 cut(s) 138, 377, 483, 492, 647
DpnII GATC 5 cut(s) 136, 375, 481, 490, 645
DraI TTTAAA 1 cut(s) 18
DriI GACNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 841
Eam1105I GACNNNNNGTC 1 cut(s) 325
Eco130I CCWWGG 2 cut(s) 132, 1067
Eco24I GRGCYC 1 cut(s) 956
Eco31I GGTCTC 2 cut(s) 719, 987
Eco57I CTGAAG 4 cut(s) 123, 258, 439, 465
Eco81I CCTNAGG 1 cut(s) 174
Eco88I CYCGRG 2 cut(s) 811, 920
EcoRII CCWGG 2 cut(s) 275, 767
EcoT14I CCWWGG 2 cut(s) 132, 1067
EcoT38I GRGCYC 1 cut(s) 956
ErhI CCWWGG 2 cut(s) 132, 1067
FaeI CATG 4 cut(s) 435, 587, 709, 947
FaqI GGGAC 2 cut(s) 113, 950
FatI CATG 4 cut(s) 431, 583, 705, 943
Fnu4HI GCNGC 5 cut(s) 6, 360, 552, 752, 833
FokI GGATG 2 cut(s) 132, 690
FriOI GRGCYC 1 cut(s) 956
Fsp4HI GCNGC 5 cut(s) 6, 360, 552, 752, 833
FspBI CTAG 1 cut(s) 990
GlaI GCGC 1 cut(s) 652
GluI GCNGC 5 cut(s) 6, 360, 552, 752, 833
HaeIII GGCC 1 cut(s) 843
HapII CCGG 1 cut(s) 675
HhaI GCGC 1 cut(s) 653
Hin1II CATG 4 cut(s) 435, 587, 709, 947
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 5 cut(s) 31, 637, 739, 822, 1024
HpaII CCGG 1 cut(s) 675
HphI GGTGA 3 cut(s) 860, 891, 925
Hpy166II GTNNAC 2 cut(s) 880, 1032
Hpy188I TCNGA 3 cut(s) 46, 445, 645
Hpy188III TCNNGA 8 cut(s) 388, 628, 675, 745, 826, 922, 944, 990
Hpy8I GTNNAC 2 cut(s) 880, 1032
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 695
HpyCH4III ACNGT 5 cut(s) 62, 299, 323, 762, 783
HpyCH4IV ACGT 1 cut(s) 963
HpyCH4V TGCA 4 cut(s) 248, 362, 754, 880
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 365, 560, 569, 702
HpyF3I CTNAG 6 cut(s) 9, 45, 174, 743, 874, 1038
HpySE526I ACGT 1 cut(s) 963
Hsp92II CATG 4 cut(s) 435, 587, 709, 947
HspAI GCGC 1 cut(s) 651
Kpn2I TCCGGA 1 cut(s) 674
Kzo9I GATC 5 cut(s) 136, 375, 481, 490, 645
Lsp1109I GCAGC 4 cut(s) 346, 563, 738, 844
LweI GCATC 2 cut(s) 235, 668
MaeI CTAG 1 cut(s) 990
MaeII ACGT 1 cut(s) 963
MaeIII GTNAC 4 cut(s) 299, 897, 906, 933
MalI GATC 5 cut(s) 138, 377, 483, 492, 647
MboI GATC 5 cut(s) 136, 375, 481, 490, 645
MfeI CAATTG 2 cut(s) 264, 485
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 2 cut(s) 882, 956
MlsI TGGCCA 1 cut(s) 843
MluCI AATT 3 cut(s) 264, 485, 720
MluNI TGGCCA 1 cut(s) 843
MlyI GAGTC 1 cut(s) 646
Mox20I TGGCCA 1 cut(s) 843
MroI TCCGGA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 843
MseI TTAA 3 cut(s) 17, 516, 1084
MslI CAYNNNNRTG 1 cut(s) 664
Msp20I TGGCCA 1 cut(s) 843
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 2 cut(s) 277, 769
MunI CAATTG 2 cut(s) 264, 485
MvaI CCWGG 2 cut(s) 277, 769
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 5 cut(s) 11, 365, 560, 569, 702
NdeII GATC 5 cut(s) 136, 375, 481, 490, 645
NlaIII CATG 4 cut(s) 435, 587, 709, 947
NlaIV GGNNCC 1 cut(s) 647
NmuCI GTSAC 3 cut(s) 299, 897, 906
NspI RCATGY 2 cut(s) 435, 587
PaeR7I CTCGAG 1 cut(s) 920
PagI TCATGA 1 cut(s) 943
PciI ACATGT 1 cut(s) 583
PfeI GAWTC 4 cut(s) 31, 739, 822, 1024
PflFI GACNNNGTC 1 cut(s) 621
PfoI TCCNGGA 1 cut(s) 767
PkrI GCNGC 5 cut(s) 7, 361, 553, 753, 834
PleI GAGTC 1 cut(s) 645
PpsI GAGTC 1 cut(s) 645
PscI ACATGT 1 cut(s) 583
Psp6I CCWGG 2 cut(s) 275, 767
PspGI CCWGG 2 cut(s) 275, 767
PspN4I GGNNCC 1 cut(s) 647
PsrI GAACNNNNNNTAC 2 cut(s) 252, 284
PsuI RGATCY 1 cut(s) 645
PsyI GACNNNGTC 1 cut(s) 621
RsaI GTAC 2 cut(s) 1001, 1065
RsaNI GTAC 2 cut(s) 1000, 1064
RseI CAYNNNNRTG 1 cut(s) 664
SaqAI TTAA 3 cut(s) 17, 516, 1084
SatI GCNGC 5 cut(s) 6, 360, 552, 752, 833
Sau3AI GATC 5 cut(s) 136, 375, 481, 490, 645
ScaI AGTACT 1 cut(s) 1001
SchI GAGTC 1 cut(s) 646
ScrFI CCNGG 2 cut(s) 277, 769
SduI GDGCHC 2 cut(s) 882, 956
SfaNI GCATC 2 cut(s) 235, 668
SfcI CTRYAG 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 920
SlaI CTCGAG 1 cut(s) 920
SmiMI CAYNNNNRTG 1 cut(s) 664
SmlI CTYRAG 5 cut(s) 200, 254, 626, 775, 920
SmoI CTYRAG 5 cut(s) 200, 254, 626, 775, 920
Sse9I AATT 3 cut(s) 264, 485, 720
SsiI CCGC 3 cut(s) 429, 554, 649
SspI AATATT 1 cut(s) 55
SspMI CTAG 1 cut(s) 990
StyD4I CCNGG 2 cut(s) 275, 767
StyI CCWWGG 2 cut(s) 132, 1067
TaaI ACNGT 5 cut(s) 62, 299, 323, 762, 783
TaiI ACGT 1 cut(s) 966
TaqI TCGA 4 cut(s) 480, 616, 806, 921
TasI AATT 3 cut(s) 264, 485, 720
TatI WGTACW 1 cut(s) 999
TfiI GAWTC 4 cut(s) 31, 739, 822, 1024
Tru1I TTAA 3 cut(s) 17, 516, 1084
Tru9I TTAA 3 cut(s) 17, 516, 1084
TscAI CASTG 2 cut(s) 788, 915
TseFI GTSAC 3 cut(s) 299, 897, 906
TseI GCWGC 5 cut(s) 5, 359, 551, 751, 832
Tsp45I GTSAC 3 cut(s) 299, 897, 906
TspDTI ATGAA 3 cut(s) 104, 932, 963
TspGWI ACGGA 1 cut(s) 771
TspRI CASTG 2 cut(s) 788, 915
Tth111I GACNNNGTC 1 cut(s) 621
VneI GTGCAC 1 cut(s) 878
XbaI TCTAGA 1 cut(s) 989
XceI RCATGY 2 cut(s) 435, 587
XhoI CTCGAG 1 cut(s) 920
XspI CTAG 1 cut(s) 990
ZrmI AGTACT 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.