Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006098

Physical Location & Seq

Genomic Coordinates Reverse (-)

25720284 .. 25723634

Gene Structure 3351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G283000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCAGAGACAGCTCTGAGAGATCTCAACGCCATACCTGGATCTGAGAAGAAGAATGAAAGCTCTAGCAAAGGAAGCATAACTAAGCCCTTAGCTGGGAATGCTAATGAAAATCAGGAAGAATGCCAGAAGAAAGCCACTGCTGCTTTGGGTGCACTTTCTATAAATGGTGCCGAAGTTGCGAATACTGGTGTTGAGATTGGAATTGCAGAAGTAGAATACATTGAGTCAGAGAATCTGAATGATCTAGAGGATGTTGATACAAGTCTCAAGACACTCGTAACTGGACTAGAATCTAAAGATTGGGTTCTGCTGTGTGAAGCACTCAATAATGTGCGTCGGTTTTCTATATTTCATAAGGAAGCCATGCTTGATATGTTGGGAGATGTGATCTCACTGGTGGTAAGGTCTCTGAAAAATCCAAGAAGTGCTGTTTGCAAAACTGCAATTATGACATCTGCAGATATTTTCAATGCTTACAACGATCTTGTAGTTGATTCATTGGACCCTCTGCTTCTACAACTGCTTCTTAAGTCTTCACAAGACAAACGATTTGTATGTGAAGCAGCCGAGAGAGCTTTAGTAGCGATGACCACTTGGGTTTCCCCTCCATTGCTGTTACCAAAGTTGCAACCATATCTGAAGAACAAAAATCCTAGAGTTCGAGCAAAGGCATCAATGTGCTTTTGCCGAAGTGTTCCACGACTGGGCGTTGAAGGCATCAAAGCTTATGGGATTGACAAATTCATTCAGACAGCTGCATCCCAGCTTAGTGACCAGCTTCCGGAGTCGAGGGAGGCTGCTCGAATTCTCCTCCTGGAGCTGCAGACTGTTTATGAGAAATTTAATGATCTCACACCAGCATCAGTATCTGAGCATCCAGAACCGAGCTCTTGGGAGAACTTTTGTCAATCAAAACTCTCGCCTCTTAGTGCACAAGCTGTTCTTCGGGTTACCAGTATCTCTCGGGAAGGTCTCGTTATGGGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

331

Amino Acids

36.07

Weight (kDa)

5.28

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01450 AT3G01450 AT3G18530 AT3G18530 AT3G18530 AT5G14790
fragaria_vesca	FvH4_6g50550 FvH4_6g50550
malus_domestica	MD09G1035400.v1.1 MD17G1035600.v1.1
prunus_persica	Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1
pyrus_communis	pycom111g02820
rosa_chinensis	RchiOBHm_Chr2g0171061
rosa_laevigata	RLG00000022000
rosa_multiflora	Rmu_sc0003517.1_g000003 Rmu_sc0007623.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080840
rosa_rugosa	Rorug02G0553400 Rorug02G0553400
rosa_samantha	Rh2AG626900 Rh2BG636900 Rh2CG605800 Rh2DG648500 Rh2DG654000
rosa_wichuraiana	Rw2G051890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccIII	TCCGGA	1 cut(s)	784
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	3 cut(s)	743, 807, 842
AcuI	CTGAAG	1 cut(s)	662
AfiI	CCNNNNNNNGG	4 cut(s)	95, 96, 707, 784
AflII	CTTAAG	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	472, 716
AjnI	CCWGG	2 cut(s)	37, 816
Alw21I	GWGCWC	3 cut(s)	157, 893, 937
Alw26I	GTCTC	4 cut(s)	2, 272, 414, 980
Alw44I	GTGCAC	2 cut(s)	153, 933
AlwI	GGATC	1 cut(s)	49
AlwNI	CAGNNNCTG	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	966
Aor13HI	TCCGGA	1 cut(s)	784
ApaLI	GTGCAC	2 cut(s)	153, 933
ApeKI	GCWGC	5 cut(s)	143, 566, 758, 800, 823
ApoI	RAATTY	3 cut(s)	743, 807, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AspS9I	GGNCC	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	966
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	2 cut(s)	157, 937
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	2 cut(s)	893, 989
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	3 cut(s)	157, 893, 937
BbvI	GCAGC	5 cut(s)	130, 578, 745, 787, 810
BciT130I	CCWGG	2 cut(s)	39, 818
BcoDI	GTCTC	4 cut(s)	2, 272, 414, 980
BfaI	CTAG	4 cut(s)	66, 248, 290, 657
BfmI	CTRYAG	2 cut(s)	459, 824
BfrI	CTTAAG	1 cut(s)	530
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	5 cut(s)	144, 567, 759, 801, 824
BlsI	GCNGC	5 cut(s)	145, 568, 760, 802, 825
Bme1390I	CCNGG	2 cut(s)	39, 818
Bme18I	GGWCC	1 cut(s)	505
BmeT110I	CYCGRG	1 cut(s)	966
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	3 cut(s)	172, 507, 988
BmrFI	CCNGG	2 cut(s)	39, 818
BmrI	ACTGGG	1 cut(s)	716
BmsI	GCATC	5 cut(s)	683, 729, 770, 872, 886
BmuI	ACTGGG	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	528
BpmI	CTGGAG	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	254
BsaI	GGTCTC	2 cut(s)	414, 980
BsaWI	WCCGGW	1 cut(s)	784
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 96, 707, 784
Bse1I	ACTGG	5 cut(s)	193, 289, 402, 711, 957
Bse3DI	GCAATG	1 cut(s)	611
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	2 cut(s)	39, 818
BseGI	GGATG	3 cut(s)	259, 761, 877
BseLI	CCNNNNNNNGG	4 cut(s)	95, 96, 707, 784
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	3 cut(s)	8, 36, 864
BseNI	ACTGG	5 cut(s)	193, 289, 402, 711, 957
BseRI	GAGGAG	1 cut(s)	803
BseSI	GKGCMC	2 cut(s)	157, 937
BseXI	GCAGC	5 cut(s)	130, 578, 745, 787, 810
BseYI	CCCAGC	2 cut(s)	95, 765
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	3 cut(s)	157, 893, 937
BsiHKCI	CYCGRG	1 cut(s)	966
BsiSI	CCGG	1 cut(s)	785
BslI	CCNNNNNNNGG	4 cut(s)	95, 96, 707, 784
BsmAI	GTCTC	4 cut(s)	2, 272, 414, 980
BsmI	GAATGC	2 cut(s)	106, 128
Bso31I	GGTCTC	2 cut(s)	414, 980
BsoBI	CYCGRG	1 cut(s)	966
Bsp1286I	GDGCHC	4 cut(s)	157, 893, 937, 989
Bsp13I	TCCGGA	1 cut(s)	784
Bsp143I	GATC	6 cut(s)	22, 41, 244, 390, 484, 850
BspCNI	CTCAG	3 cut(s)	9, 37, 865
BspEI	TCCGGA	1 cut(s)	784
BspLI	GGNNCC	3 cut(s)	172, 507, 988
BspMAI	CTGCAG	2 cut(s)	463, 828
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	170
BspTI	CTTAAG	1 cut(s)	530
BspTNI	GGTCTC	2 cut(s)	414, 980
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	5 cut(s)	193, 289, 402, 711, 957
BssMI	GATC	6 cut(s)	22, 41, 244, 390, 484, 850
Bst2UI	CCWGG	2 cut(s)	39, 818
Bst4CI	ACNGT	1 cut(s)	832
BstAFI	CTTAAG	1 cut(s)	530
BstDEI	CTNAG	7 cut(s)	17, 45, 84, 91, 770, 873, 929
BstEII	GGTNACC	1 cut(s)	952
BstF5I	GGATG	3 cut(s)	259, 761, 877
BstKTI	GATC	6 cut(s)	25, 44, 247, 393, 487, 853
BstMAI	GTCTC	4 cut(s)	2, 272, 414, 980
BstMBI	GATC	6 cut(s)	22, 41, 244, 390, 484, 850
BstMWI	GCNNNNNNNGC	8 cut(s)	75, 101, 143, 152, 179, 575, 584, 717
BstNI	CCWGG	2 cut(s)	39, 818
BstPI	GGTNACC	1 cut(s)	952
BstSCI	CCNGG	2 cut(s)	37, 816
BstSFI	CTRYAG	2 cut(s)	459, 824
BstSLI	GKGCMC	2 cut(s)	157, 937
BstV1I	GCAGC	5 cut(s)	130, 578, 745, 787, 810
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	2 cut(s)	22, 41
BstYI	RGATCY	2 cut(s)	22, 41
BtgZI	GCGATG	1 cut(s)	602
BtsCI	GGATG	3 cut(s)	259, 761, 877
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 395
CaiI	CAGNNNCTG	1 cut(s)	872
Cfr13I	GGNCC	1 cut(s)	505
CseI	GACGC	1 cut(s)	326
CviAII	CATG	1 cut(s)	367
DdeI	CTNAG	7 cut(s)	17, 45, 84, 91, 770, 873, 929
DpnI	GATC	6 cut(s)	24, 43, 246, 392, 486, 852
DpnII	GATC	6 cut(s)	22, 41, 244, 390, 484, 850
Ecl136II	GAGCTC	1 cut(s)	891
Eco24I	GRGCYC	2 cut(s)	893, 989
Eco31I	GGTCTC	2 cut(s)	414, 980
Eco47I	GGWCC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	891
Eco57I	CTGAAG	1 cut(s)	662
Eco88I	CYCGRG	1 cut(s)	966
Eco91I	GGTNACC	1 cut(s)	952
EcoICRI	GAGCTC	1 cut(s)	891
EcoO65I	GGTNACC	1 cut(s)	952
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	2 cut(s)	37, 816
EcoT38I	GRGCYC	2 cut(s)	893, 989
FaeI	CATG	1 cut(s)	370
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 930, 962
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	144, 567, 759, 801, 824
FokI	GGATG	3 cut(s)	266, 748, 864
FriOI	GRGCYC	2 cut(s)	893, 989
Fsp4HI	GCNGC	5 cut(s)	144, 567, 759, 801, 824
FspBI	CTAG	4 cut(s)	66, 248, 290, 657
GluI	GCNGC	5 cut(s)	144, 567, 759, 801, 824
GsaI	CCCAGC	2 cut(s)	99, 769
GsuI	CTGGAG	1 cut(s)	839
HapII	CCGG	1 cut(s)	785
HgaI	GACGC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	5 cut(s)	227, 235, 293, 497, 788
HpaII	CCGG	1 cut(s)	785
Hpy166II	GTNNAC	2 cut(s)	155, 935
Hpy188I	TCNGA	9 cut(s)	7, 18, 46, 232, 240, 414, 642, 753, 874
Hpy188III	TCNNGA	7 cut(s)	116, 248, 271, 785, 881, 968, 990
Hpy8I	GTNNAC	2 cut(s)	155, 935
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	2 cut(s)	710, 965
HpyCH4III	ACNGT	1 cut(s)	832
HpyCH4V	TGCA	9 cut(s)	155, 209, 438, 446, 461, 631, 761, 826, 935
HpyF10VI	GCNNNNNNNGC	8 cut(s)	75, 101, 143, 152, 179, 575, 584, 717
HpyF3I	CTNAG	7 cut(s)	17, 45, 84, 91, 770, 873, 929
Hsp92II	CATG	1 cut(s)	370
Kpn2I	TCCGGA	1 cut(s)	784
Kzo9I	GATC	6 cut(s)	22, 41, 244, 390, 484, 850
LmnI	GCTCC	2 cut(s)	820, 992
Lsp1109I	GCAGC	5 cut(s)	130, 578, 745, 787, 810
LweI	GCATC	5 cut(s)	683, 729, 770, 872, 886
MaeI	CTAG	4 cut(s)	66, 248, 290, 657
MaeIII	GTNAC	4 cut(s)	280, 618, 773, 952
MalI	GATC	6 cut(s)	24, 43, 246, 392, 486, 852
MboI	GATC	6 cut(s)	22, 41, 244, 390, 484, 850
MboII	GAAGA	7 cut(s)	61, 64, 131, 142, 528, 655, 938
MflI	RGATCY	2 cut(s)	22, 41
MhlI	GDGCHC	4 cut(s)	157, 893, 937, 989
MluCI	AATT	5 cut(s)	204, 447, 743, 807, 842
MlyI	GAGTC	2 cut(s)	236, 797
MnlI	CCTC	7 cut(s)	244, 519, 618, 786, 790, 824, 936
MroI	TCCGGA	1 cut(s)	784
MseI	TTAA	2 cut(s)	531, 846
MslI	CAYNNNNRTG	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	758
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	1 cut(s)	785
MspR9I	CCNGG	2 cut(s)	39, 818
Mva1269I	GAATGC	2 cut(s)	106, 128
MvaI	CCWGG	2 cut(s)	39, 818
MwoI	GCNNNNNNNGC	8 cut(s)	75, 101, 143, 152, 179, 575, 584, 717
NdeII	GATC	6 cut(s)	22, 41, 244, 390, 484, 850
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	3 cut(s)	172, 507, 988
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	773
PctI	GAATGC	2 cut(s)	106, 128
PfeI	GAWTC	3 cut(s)	235, 293, 497
PfoI	TCCNGGA	1 cut(s)	816
PkrI	GCNGC	5 cut(s)	145, 568, 760, 802, 825
PleI	GAGTC	2 cut(s)	235, 796
PpsI	GAGTC	2 cut(s)	235, 796
Psp124BI	GAGCTC	1 cut(s)	893
Psp6I	CCWGG	2 cut(s)	37, 816
PspEI	GGTNACC	1 cut(s)	952
PspFI	CCCAGC	2 cut(s)	95, 765
PspGI	CCWGG	2 cut(s)	37, 816
PspN4I	GGNNCC	3 cut(s)	172, 507, 988
PspPI	GGNCC	1 cut(s)	505
PstI	CTGCAG	2 cut(s)	463, 828
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	2 cut(s)	22, 41
PvuII	CAGCTG	1 cut(s)	758
RseI	CAYNNNNRTG	1 cut(s)	679
SacI	GAGCTC	1 cut(s)	893
SaqAI	TTAA	2 cut(s)	531, 846
SatI	GCNGC	5 cut(s)	144, 567, 759, 801, 824
Sau3AI	GATC	6 cut(s)	22, 41, 244, 390, 484, 850
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	2 cut(s)	236, 797
ScrFI	CCNGG	2 cut(s)	39, 818
SduI	GDGCHC	4 cut(s)	157, 893, 937, 989
SfaNI	GCATC	5 cut(s)	683, 729, 770, 872, 886
SfcI	CTRYAG	2 cut(s)	459, 824
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	2 cut(s)	269, 530
SmoI	CTYRAG	2 cut(s)	269, 530
Sse9I	AATT	5 cut(s)	204, 447, 743, 807, 842
SspMI	CTAG	4 cut(s)	66, 248, 290, 657
SstI	GAGCTC	1 cut(s)	893
StyD4I	CCNGG	2 cut(s)	37, 816
TaaI	ACNGT	1 cut(s)	832
TaqI	TCGA	3 cut(s)	664, 791, 805
TasI	AATT	5 cut(s)	204, 447, 743, 807, 842
TfiI	GAWTC	3 cut(s)	235, 293, 497
Tru1I	TTAA	2 cut(s)	531, 846
Tru9I	TTAA	2 cut(s)	531, 846
TscAI	CASTG	2 cut(s)	145, 402
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	5 cut(s)	143, 566, 758, 800, 823
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	5 cut(s)	72, 123, 344, 489, 736
TspRI	CASTG	2 cut(s)	145, 402
Vha464I	CTTAAG	1 cut(s)	530
VneI	GTGCAC	2 cut(s)	153, 933
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	3 cut(s)	743, 807, 842
XbaI	TCTAGA	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	4 cut(s)	66, 248, 290, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.