Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006098

Physical Location & Seq

Genomic Coordinates Forward (+)

2166855 .. 2170392

Gene Structure 3538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1035400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTCAGAGAATGCTCTTAGAGATCTCAATACAATACTTGGATCCGAGAGGAAGAATGAAGACTCTAGCAAAGGGAATATAACTAAGCATGTCGCTGCAAATGCTAATGAAAATCATGACGAATGCCTGAAGAAAACCACCGCTTCGTTGGGTTCACTTTCAATAAATGGTGAGGAAGTTGCAAGTTCCGTACCCGAGGTTGGAATTGCCGAAGTAGAATACATTGAGTCCAAGAATCTGAATGATCTAGAAAATGTGGATACAAGTCTTAAGATACTCTTAACAGGACTAGAATCTAAAGATTGGGTTCTGGTGTGTGAAGCGCTCAATAATGTGCGTCGATTTTCTATATTTCATAAGGAAGCCATGCTTGATATGTTGGGAGATGTGATATTGCTTGTGGTAAAGTCACTTAAGAATCCAAGAAGTGCTGTTTGCAAAACTGCAATTATGACATCTGCTGATATTTTCAATGCATATGCTGATCTTGTGATTGATTCATTGGACCCTATGCTTACACAACTTCTTCTAAAGTCTTCACAAGACAAACGATTTGTATGTGAGGCAGCTGAGAGAGCTTTAGTAGCGATGACCACTTGGGTTTCCCCTACATTGTTGTTACCCAAGTTGCAACCATATCTGAAGAACAGAAATCCTAGAGTTCGAGCAAAGGCATCAACGTGCTTTTGTCGAAGTGTTCCACGACTGGGTGTTGAAGGTATTAAAGCATATGGGATTGACAAATTAATTCAAATTGCTGCATCCCAGCTTAGTGACCAGCTTCCTGAGTCGAGGGAGGCTGCTCGGATCCTCCTCCTGGAGCTGCAGACTGTTTACGAGAAATTTGATTATCCCCCACCAGCAGCTGTGTCTGAACATCCAGAAACGAGCTCAGCACCAGCGCCTGAGCTCTCAGAAACGAGCTCATGGGAGAACTTTTGTCAGTCAAAACTCTCGCCTCTCAGTGCACAAGCTGTTCTTCGGGTTACCAATATATCTCGGGAAGGTCTTGTTGTGGGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

342

Amino Acids

37.39

Weight (kDa)

5.36

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01450 AT3G01450 AT3G18530 AT3G18530 AT3G18530 AT5G14790
fragaria_vesca	FvH4_6g50550 FvH4_6g50550
malus_domestica	MD09G1035400.v1.1 MD17G1035600.v1.1
prunus_persica	Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1 Prupe.3G283000_v2.0.a1
pyrus_communis	pycom111g02820
rosa_chinensis	RchiOBHm_Chr2g0171061
rosa_laevigata	RLG00000022000
rosa_multiflora	Rmu_sc0003517.1_g000003 Rmu_sc0007623.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080840
rosa_rugosa	Rorug02G0553400 Rorug02G0553400
rosa_samantha	Rh2AG626900 Rh2BG636900 Rh2CG605800 Rh2DG648500 Rh2DG654000
rosa_wichuraiana	Rw2G051890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	4 cut(s)	36, 49, 802, 815
AcsI	RAATTY	1 cut(s)	842
AcuI	CTGAAG	2 cut(s)	149, 662
AfaI	GTAC	1 cut(s)	192
AfeI	AGCGCT	1 cut(s)	324
AfiI	CCNNNNNNNGG	3 cut(s)	200, 707, 817
AflII	CTTAAG	2 cut(s)	269, 413
AgsI	TTSAA	4 cut(s)	162, 472, 716, 752
AjnI	CCWGG	1 cut(s)	816
Alw21I	GWGCWC	4 cut(s)	893, 912, 926, 970
Alw44I	GTGCAC	1 cut(s)	966
AlwI	GGATC	4 cut(s)	36, 49, 802, 815
AlwNI	CAGNNNCTG	2 cut(s)	866, 905
Ama87I	CYCGRG	2 cut(s)	194, 999
Aor51HI	AGCGCT	1 cut(s)	324
ApaLI	GTGCAC	1 cut(s)	966
ApeKI	GCWGC	6 cut(s)	95, 566, 758, 800, 823, 863
ApoI	RAATTY	1 cut(s)	842
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AseI	ATTAAT	1 cut(s)	746
AspLEI	GCGC	2 cut(s)	325, 904
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	182
AvaI	CYCGRG	2 cut(s)	194, 999
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	970
BamHI	GGATCC	2 cut(s)	41, 807
BanII	GRGCYC	4 cut(s)	893, 912, 926, 1022
BbsI	GAAGAC	2 cut(s)	66, 528
Bbv12I	GWGCWC	4 cut(s)	893, 912, 926, 970
BbvI	GCAGC	6 cut(s)	82, 578, 745, 787, 810, 875
BciT130I	CCWGG	1 cut(s)	818
BciVI	GTATCC	1 cut(s)	253
BfaI	CTAG	4 cut(s)	66, 248, 290, 657
BfmI	CTRYAG	1 cut(s)	824
BfoI	RGCGCY	2 cut(s)	326, 905
BfrI	CTTAAG	2 cut(s)	269, 413
BfuI	GTATCC	1 cut(s)	253
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	6 cut(s)	96, 567, 759, 801, 824, 864
BlpI	GCTNAGC	1 cut(s)	892
BlsI	GCNGC	6 cut(s)	97, 568, 760, 802, 825, 865
Bme1390I	CCNGG	1 cut(s)	818
Bme18I	GGWCC	1 cut(s)	505
BmeT110I	CYCGRG	2 cut(s)	194, 999
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	4 cut(s)	43, 507, 809, 1021
BmrFI	CCNGG	1 cut(s)	818
BmrI	ACTGGG	1 cut(s)	716
BmsI	GCATC	2 cut(s)	683, 770
BmuI	ACTGGG	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	66, 528
BpmI	CTGGAG	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	906
Bpu1102I	GCTNAGC	1 cut(s)	892
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 707, 817
Bse1I	ACTGG	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	818
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	761, 877
BseLI	CCNNNNNNNGG	3 cut(s)	200, 707, 817
BseMII	CTCAG	6 cut(s)	561, 777, 897, 906, 927, 976
BseNI	ACTGG	1 cut(s)	711
BseRI	GAGGAG	1 cut(s)	803
BseSI	GKGCMC	1 cut(s)	970
BseXI	GCAGC	6 cut(s)	82, 578, 745, 787, 810, 875
BseYI	CCCAGC	1 cut(s)	765
BsiHKAI	GWGCWC	4 cut(s)	893, 912, 926, 970
BsiHKCI	CYCGRG	2 cut(s)	194, 999
BslI	CCNNNNNNNGG	3 cut(s)	200, 707, 817
BsmI	GAATGC	2 cut(s)	16, 128
BsoBI	CYCGRG	2 cut(s)	194, 999
Bsp1286I	GDGCHC	5 cut(s)	893, 912, 926, 970, 1022
Bsp143I	GATC	5 cut(s)	22, 41, 244, 484, 807
Bsp1720I	GCTNAGC	1 cut(s)	892
BspACI	CCGC	1 cut(s)	141
BspCNI	CTCAG	6 cut(s)	562, 778, 898, 905, 926, 975
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	4 cut(s)	43, 507, 809, 1021
BspMAI	CTGCAG	1 cut(s)	828
BspPI	GGATC	4 cut(s)	36, 49, 802, 815
BspTI	CTTAAG	2 cut(s)	269, 413
BsrI	ACTGG	1 cut(s)	711
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	5 cut(s)	22, 41, 244, 484, 807
Bst2UI	CCWGG	1 cut(s)	818
Bst4CI	ACNGT	1 cut(s)	832
BstAFI	CTTAAG	2 cut(s)	269, 413
BstDEI	CTNAG	9 cut(s)	17, 84, 570, 770, 786, 892, 906, 913, 962
BstEII	GGTNACC	1 cut(s)	985
BstF5I	GGATG	2 cut(s)	761, 877
BstH2I	RGCGCY	2 cut(s)	326, 905
BstHHI	GCGC	2 cut(s)	325, 904
BstKTI	GATC	5 cut(s)	25, 44, 247, 487, 810
BstMBI	GATC	5 cut(s)	22, 41, 244, 484, 807
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 575, 584
BstNI	CCWGG	1 cut(s)	818
BstNSI	RCATGY	1 cut(s)	92
BstPI	GGTNACC	1 cut(s)	985
BstSCI	CCNGG	1 cut(s)	816
BstSFI	CTRYAG	1 cut(s)	824
BstSLI	GKGCMC	1 cut(s)	970
BstV1I	GCAGC	6 cut(s)	82, 578, 745, 787, 810, 875
BstV2I	GAAGAC	2 cut(s)	66, 528
BstX2I	RGATCY	3 cut(s)	22, 41, 807
BstYI	RGATCY	3 cut(s)	22, 41, 807
BsuI	GTATCC	1 cut(s)	253
BtgZI	GCGATG	1 cut(s)	602
BtsCI	GGATG	2 cut(s)	761, 877
BtsIMutI	CAGTG	1 cut(s)	970
CaiI	CAGNNNCTG	2 cut(s)	866, 905
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	2 cut(s)	325, 904
Cfr13I	GGNCC	1 cut(s)	505
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	4 cut(s)	89, 116, 367, 927
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	9 cut(s)	17, 84, 570, 770, 786, 892, 906, 913, 962
DpnI	GATC	5 cut(s)	24, 43, 246, 486, 809
DpnII	GATC	5 cut(s)	22, 41, 244, 484, 807
Ecl136II	GAGCTC	3 cut(s)	891, 910, 924
Eco24I	GRGCYC	4 cut(s)	893, 912, 926, 1022
Eco47I	GGWCC	1 cut(s)	505
Eco47III	AGCGCT	1 cut(s)	324
Eco53kI	GAGCTC	3 cut(s)	891, 910, 924
Eco57I	CTGAAG	2 cut(s)	149, 662
Eco88I	CYCGRG	2 cut(s)	194, 999
Eco91I	GGTNACC	1 cut(s)	985
EcoICRI	GAGCTC	3 cut(s)	891, 910, 924
EcoO65I	GGTNACC	1 cut(s)	985
EcoRII	CCWGG	1 cut(s)	816
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	4 cut(s)	893, 912, 926, 1022
FaeI	CATG	4 cut(s)	92, 119, 370, 930
FalI	AAGNNNNNCTT	6 cut(s)	263, 295, 354, 386, 963, 995
FatI	CATG	4 cut(s)	88, 115, 366, 926
FauNDI	CATATG	2 cut(s)	478, 730
Fnu4HI	GCNGC	6 cut(s)	96, 567, 759, 801, 824, 864
FokI	GGATG	2 cut(s)	748, 864
FriOI	GRGCYC	4 cut(s)	893, 912, 926, 1022
Fsp4HI	GCNGC	6 cut(s)	96, 567, 759, 801, 824, 864
FspBI	CTAG	4 cut(s)	66, 248, 290, 657
GlaI	GCGC	2 cut(s)	324, 903
GluI	GCNGC	6 cut(s)	96, 567, 759, 801, 824, 864
GsaI	CCCAGC	1 cut(s)	769
GsuI	CTGGAG	1 cut(s)	839
HaeII	RGCGCY	2 cut(s)	326, 905
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	2 cut(s)	325, 904
Hin1II	CATG	4 cut(s)	92, 119, 370, 930
Hin6I	GCGC	2 cut(s)	323, 902
HinP1I	GCGC	2 cut(s)	323, 902
HinfI	GANTC	7 cut(s)	62, 227, 235, 293, 418, 497, 788
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	3 cut(s)	155, 835, 968
Hpy188I	TCNGA	7 cut(s)	7, 46, 240, 642, 807, 874, 916
Hpy188III	TCNNGA	6 cut(s)	116, 248, 785, 881, 1001, 1023
Hpy8I	GTNNAC	3 cut(s)	155, 835, 968
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	2 cut(s)	710, 998
HpyCH4III	ACNGT	1 cut(s)	832
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	9 cut(s)	98, 182, 438, 446, 476, 631, 761, 826, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 575, 584
HpyF3I	CTNAG	9 cut(s)	17, 84, 570, 770, 786, 892, 906, 913, 962
HpySE526I	ACGT	1 cut(s)	680
Hsp92II	CATG	4 cut(s)	92, 119, 370, 930
HspAI	GCGC	2 cut(s)	323, 902
Kzo9I	GATC	5 cut(s)	22, 41, 244, 484, 807
LmnI	GCTCC	2 cut(s)	820, 1025
Lsp1109I	GCAGC	6 cut(s)	82, 578, 745, 787, 810, 875
LweI	GCATC	2 cut(s)	683, 770
MaeI	CTAG	4 cut(s)	66, 248, 290, 657
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	4 cut(s)	408, 618, 773, 985
MalI	GATC	5 cut(s)	24, 43, 246, 486, 809
MboI	GATC	5 cut(s)	22, 41, 244, 484, 807
MboII	GAAGA	7 cut(s)	64, 71, 142, 518, 528, 655, 971
MflI	RGATCY	3 cut(s)	22, 41, 807
MhlI	GDGCHC	5 cut(s)	893, 912, 926, 970, 1022
MluCI	AATT	6 cut(s)	204, 447, 743, 747, 753, 842
MlyI	GAGTC	3 cut(s)	56, 236, 797
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	9 cut(s)	42, 166, 190, 556, 786, 790, 821, 824, 969
Mph1103I	ATGCAT	1 cut(s)	478
MseI	TTAA	5 cut(s)	270, 281, 414, 723, 746
MslI	CAYNNNNRTG	1 cut(s)	679
MspA1I	CMGCKG	2 cut(s)	569, 866
MspCI	CTTAAG	2 cut(s)	269, 413
MspR9I	CCNGG	1 cut(s)	818
Mva1269I	GAATGC	2 cut(s)	16, 128
MvaI	CCWGG	1 cut(s)	818
MwoI	GCNNNNNNNGC	3 cut(s)	101, 575, 584
NdeI	CATATG	2 cut(s)	478, 730
NdeII	GATC	5 cut(s)	22, 41, 244, 484, 807
NlaIII	CATG	4 cut(s)	92, 119, 370, 930
NlaIV	GGNNCC	4 cut(s)	43, 507, 809, 1021
NmuCI	GTSAC	2 cut(s)	408, 773
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	92
PagI	TCATGA	1 cut(s)	115
PctI	GAATGC	2 cut(s)	16, 128
PfeI	GAWTC	4 cut(s)	235, 293, 418, 497
PfoI	TCCNGGA	1 cut(s)	816
PkrI	GCNGC	6 cut(s)	97, 568, 760, 802, 825, 865
PleI	GAGTC	3 cut(s)	56, 235, 796
PpsI	GAGTC	3 cut(s)	56, 235, 796
PshBI	ATTAAT	1 cut(s)	746
Psp124BI	GAGCTC	3 cut(s)	893, 912, 926
Psp6I	CCWGG	1 cut(s)	816
PspEI	GGTNACC	1 cut(s)	985
PspFI	CCCAGC	1 cut(s)	765
PspGI	CCWGG	1 cut(s)	816
PspN4I	GGNNCC	4 cut(s)	43, 507, 809, 1021
PspPI	GGNCC	1 cut(s)	505
PstI	CTGCAG	1 cut(s)	828
PstNI	CAGNNNCTG	2 cut(s)	866, 905
PsuI	RGATCY	3 cut(s)	22, 41, 807
PvuII	CAGCTG	2 cut(s)	569, 866
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	679
SacI	GAGCTC	3 cut(s)	893, 912, 926
SaqAI	TTAA	5 cut(s)	270, 281, 414, 723, 746
SatI	GCNGC	6 cut(s)	96, 567, 759, 801, 824, 864
Sau3AI	GATC	5 cut(s)	22, 41, 244, 484, 807
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	3 cut(s)	56, 236, 797
ScrFI	CCNGG	1 cut(s)	818
SduI	GDGCHC	5 cut(s)	893, 912, 926, 970, 1022
SfaNI	GCATC	2 cut(s)	683, 770
SfcI	CTRYAG	1 cut(s)	824
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	2 cut(s)	269, 413
SmoI	CTYRAG	2 cut(s)	269, 413
Sse9I	AATT	6 cut(s)	204, 447, 743, 747, 753, 842
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	4 cut(s)	66, 248, 290, 657
SstI	GAGCTC	3 cut(s)	893, 912, 926
StyD4I	CCNGG	1 cut(s)	816
TaaI	ACNGT	1 cut(s)	832
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	4 cut(s)	340, 664, 691, 791
TasI	AATT	6 cut(s)	204, 447, 743, 747, 753, 842
TfiI	GAWTC	4 cut(s)	235, 293, 418, 497
Tru1I	TTAA	5 cut(s)	270, 281, 414, 723, 746
Tru9I	TTAA	5 cut(s)	270, 281, 414, 723, 746
TscAI	CASTG	1 cut(s)	970
TseFI	GTSAC	2 cut(s)	408, 773
TseI	GCWGC	6 cut(s)	95, 566, 758, 800, 823, 863
Tsp45I	GTSAC	2 cut(s)	408, 773
TspDTI	ATGAA	4 cut(s)	72, 123, 344, 489
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	970
Vha464I	CTTAAG	2 cut(s)	269, 413
VneI	GTGCAC	1 cut(s)	966
VpaK11BI	GGWCC	1 cut(s)	505
VspI	ATTAAT	1 cut(s)	746
XapI	RAATTY	1 cut(s)	842
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	92
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	4 cut(s)	66, 248, 290, 657
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.