Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003523

Physical Location & Seq

Genomic Coordinates Forward (+)

330099 .. 333132

Gene Structure 3034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGATGATGATGAATATGCCAAGCTCATCAGGAGAATGAATCCTCCCAGAGTTGTAATAGACAACAACGCAAGCGACGATGCCACTGTTATTCAGGTTGATAGTGTGAACAAACATGGGACTCTATTGGAAGTAGTACAAGTGCTCACTGATATGAATCTTGTGATCAAGAAAGCTTACATCTCTTCCGATGGAGGTTGGTTCATGGACGTTTTCAAAGTCATCGACCAAGATGGCAATAAGATCAGAGACACTCAAGTCCTTGACTATATCCAAAAGAGGATAGAGAGCAACGCTGGGTGGTTCATTCCACCTTTGAGAAGCTCAGTTGGTGTAATGCCCACTGACGAATACACATCCATTGAGCTCGCTGGAACTGACAGACCCGGTCTCTTGTCTGAAGTATCTGCTGTTCTCACAGACCTTCACTGCAACGTTGTGAACGCTGAGATATGGACTCACAACACCAGAGCTGCAGCGGTTATTCATGTCACGGACAATTCAACTCATTCTGCCATTACTGACCCGATTCGCCTTTCCACCATCAAGGAGCTGCTGTGCAATGTAGTGAGGACAAACAGCGGCTCAAGAGCTGCGAAAACAGTCTTCTCTTGTTCTGATACACACAGGGAGAGACGGTTGCATCAGATCATGTTTGATGATAGGGACTACGAGGGAGTCAAAAGAGCAAGGACATCGGCGTCAAGGCCCAGTGTCACACTAATGAACATTGAGAAGGATTATACCGTTGTTACCATGAGGTCCAAAGATAGACCAAAGCTTGTGTTTGACGTAGTCTGTACTTTGACTGATATGCAGTATGTGGTGTTCCATGGCATGGTCAGCACAGAACCAGTGGAGGCTTATCAGGAATTTTACATCCGTCATGTGGATGGACTTCCCATAAACTCAGAAGCAGAGCAAGAACGTGTCATACAATGTCTGGAAGCAGCCATTGAGAGGAGAGCATCGGAGGGTTTAGAGCTGGAATTATCAGCAGAAGACCGAGTTGGTCTTCTCTCAGACATAACCAGAACATTCCGAGAGAACAGCTTAACCATTGTGAGAGCAGAGATATCAACGCGAGAGGGTAAGGCTAAAGACACGTTCTACGTTACAGACGTGACTGGAAACCCGGTTGAATCAAAAATCGTGGAGTCAATCAGACAACAGATAGGAGTAAGCAAGCTGAAGGTGAAGAAGAAGGAGAAGGAGCATTGCTCTGTTCTTGGTACAAGCAGGCCTTCGCACGAAACAACTACAATGGGGTATTTGCTAAGTAACATCTTCAAACCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

433

Amino Acids

48.74

Weight (kDa)

5.84

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT_ACR9_3rd	PF24931	18 - 98	1.2e-06	ACR9-like, ACT-like domain
ACT	PF01842	29 - 80	1.2e-06	ACT domain
ACT	PF01842	120 - 167	4.7e-08	ACT domain
ACT	PF01842	329 - 391	3e-10	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990
fragaria_vesca	FvH4_6g53840
malus_domestica	MD09G1008100.v1.1 MD17G1002600.v1.1
prunus_persica	Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1
pyrus_communis	pycom111g00650 pycom17g00680
rosa_chinensis	RchiOBHm_Chr2g0175981
rosa_laevigata	RLG00000022370
rosa_multiflora	Rmu_co8433007.1_g000001 Rmu_sc0012513.1_g000007 Rmu_sc0018801.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076890
rosa_rugosa	Rorug02G0589100 Rorug02G0589100
rosa_samantha	Rh2AG668300 Rh2BG679800 Rh2CG642700 Rh2DG693500
rosa_wichuraiana	Rw2G054790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	257, 700
AccB7I	CCANNNNNTGG	1 cut(s)	838
AccII	CGCG	1 cut(s)	1084
AciI	CCGC	2 cut(s)	479, 582
AclI	AACGTT	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	872
AcuI	CTGAAG	2 cut(s)	420, 1211
AcyI	GRCGYC	1 cut(s)	701
AfaI	GTAC	3 cut(s)	138, 802, 1234
AfiI	CCNNNNNNNGG	3 cut(s)	838, 889, 960
AflIII	ACRYGT	2 cut(s)	928, 1104
AgsI	TTSAA	4 cut(s)	217, 504, 1142, 1291
AjiI	CACGTC	1 cut(s)	1123
AjuI	GAANNNNNNNTTGG	2 cut(s)	993, 1025
Alw21I	GWGCWC	2 cut(s)	147, 369
Alw26I	GTCTC	3 cut(s)	243, 395, 628
AoxI	GGCC	2 cut(s)	707, 1241
ApeKI	GCWGC	5 cut(s)	473, 476, 553, 593, 950
ApoI	RAATTY	1 cut(s)	872
AspS9I	GGNCC	2 cut(s)	708, 762
AsuC2I	CCSGG	2 cut(s)	387, 1136
AsuHPI	GGTGA	1 cut(s)	1207
AvaII	GGWCC	1 cut(s)	762
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	3 cut(s)	598, 1007, 1008
Bbv12I	GWGCWC	2 cut(s)	147, 369
BbvI	GCAGC	5 cut(s)	460, 488, 540, 580, 962
BccI	CCATC	4 cut(s)	185, 227, 551, 887
BcgI	CGANNNNNNTGC	2 cut(s)	678, 712
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	2 cut(s)	387, 1136
BcoDI	GTCTC	3 cut(s)	243, 395, 628
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	6 cut(s)	474, 477, 554, 583, 594, 951
BlsI	GCNGC	6 cut(s)	475, 478, 555, 584, 595, 952
Bme1390I	CCNGG	2 cut(s)	387, 1136
Bme18I	GGWCC	1 cut(s)	762
BmgBI	CACGTC	1 cut(s)	1123
BmgT120I	GGNCC	2 cut(s)	708, 762
BmrFI	CCNGG	2 cut(s)	387, 1136
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	3 cut(s)	70, 652, 977
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	3 cut(s)	598, 1007, 1008
BplI	GAGNNNNNCTC	2 cut(s)	1205, 1237
BpuEI	CTTGAG	2 cut(s)	240, 571
BpuMI	CCSGG	2 cut(s)	387, 1136
BsaBI	GATNNNNATC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	701
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	832
BsaXI	ACNNNNNCTCC	4 cut(s)	542, 572, 623, 653
Bsc4I	CCNNNNNNNGG	3 cut(s)	838, 889, 960
Bse1I	ACTGG	3 cut(s)	711, 854, 1132
Bse3DI	GCAATG	2 cut(s)	568, 1216
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	832
BseGI	GGATG	4 cut(s)	10, 356, 879, 898
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	3 cut(s)	838, 889, 960
BseMI	GCAATG	2 cut(s)	568, 1216
BseMII	CTCAG	4 cut(s)	339, 438, 924, 1035
BseNI	ACTGG	3 cut(s)	711, 854, 1132
BseRI	GAGGAG	1 cut(s)	976
BseXI	GCAGC	5 cut(s)	460, 488, 540, 580, 962
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	1084
BshFI	GGCC	2 cut(s)	709, 1243
BsiHKAI	GWGCWC	2 cut(s)	147, 369
BsiSI	CCGG	2 cut(s)	387, 1136
BslFI	GGGAC	2 cut(s)	133, 680
BslI	CCNNNNNNNGG	3 cut(s)	838, 889, 960
BsmAI	GTCTC	3 cut(s)	243, 395, 628
BsmBI	CGTCTC	1 cut(s)	628
BsmFI	GGGAC	2 cut(s)	133, 680
BsnI	GGCC	2 cut(s)	709, 1243
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	147, 369
Bsp143I	GATC	3 cut(s)	165, 243, 648
Bsp19I	CCATGG	1 cut(s)	832
BspACI	CCGC	2 cut(s)	479, 582
BspANI	GGCC	2 cut(s)	709, 1243
BspCNI	CTCAG	4 cut(s)	338, 439, 923, 1034
BspFNI	CGCG	1 cut(s)	1084
BspMAI	CTGCAG	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	568, 1216
BsrI	ACTGG	3 cut(s)	711, 854, 1132
BssECI	CCNNGG	1 cut(s)	832
BssMI	GATC	3 cut(s)	165, 243, 648
BssNI	GRCGYC	1 cut(s)	701
BssT1I	CCWWGG	1 cut(s)	832
Bst4CI	ACNGT	4 cut(s)	88, 604, 639, 748
Bst6I	CTCTTC	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	701
BstC8I	GCNNGC	4 cut(s)	73, 369, 1187, 1241
BstDEI	CTNAG	5 cut(s)	325, 447, 910, 1021, 1277
BstDSI	CCRYGG	1 cut(s)	832
BstF5I	GGATG	4 cut(s)	10, 356, 879, 898
BstFNI	CGCG	1 cut(s)	1084
BstKTI	GATC	3 cut(s)	168, 246, 651
BstMAI	GTCTC	3 cut(s)	243, 395, 628
BstMBI	GATC	3 cut(s)	165, 243, 648
BstMWI	GCNNNNNNNGC	1 cut(s)	843
BstSCI	CCNGG	2 cut(s)	385, 1134
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	1084
BstV1I	GCAGC	5 cut(s)	460, 488, 540, 580, 962
BstV2I	GAAGAC	3 cut(s)	598, 1007, 1008
BsuRI	GGCC	2 cut(s)	709, 1243
BtgI	CCRYGG	1 cut(s)	832
BtrI	CACGTC	1 cut(s)	1123
BtsCI	GGATG	4 cut(s)	10, 356, 879, 898
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	6 cut(s)	84, 147, 342, 427, 718, 861
Cac8I	GCNNGC	4 cut(s)	73, 369, 1187, 1241
Cfr13I	GGNCC	2 cut(s)	708, 762
CseI	GACGC	1 cut(s)	690
Csp6I	GTAC	3 cut(s)	137, 801, 1233
CspCI	CAANNNNNGTGG	2 cut(s)	1134, 1169
CviAII	CATG	8 cut(s)	116, 205, 488, 652, 757, 833, 838, 887
CviQI	GTAC	3 cut(s)	137, 801, 1233
DdeI	CTNAG	5 cut(s)	325, 447, 910, 1021, 1277
DpnI	GATC	3 cut(s)	167, 245, 650
DpnII	GATC	3 cut(s)	165, 243, 648
DrdI	GACNNNNNNGTC	2 cut(s)	257, 700
DseDI	GACNNNNNNGTC	2 cut(s)	257, 700
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	832
Eco147I	AGGCCT	1 cut(s)	1243
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	1077
Eco47I	GGWCC	1 cut(s)	762
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	420, 1211
EcoICRI	GAGCTC	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	1077
EcoT14I	CCWWGG	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	832
Esp3I	CGTCTC	1 cut(s)	628
FaeI	CATG	8 cut(s)	119, 208, 491, 655, 760, 836, 841, 890
FalI	AAGNNNNNCTT	2 cut(s)	1228, 1260
FaqI	GGGAC	2 cut(s)	133, 680
FatI	CATG	8 cut(s)	115, 204, 487, 651, 756, 832, 837, 886
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	6 cut(s)	474, 477, 554, 583, 594, 951
FokI	GGATG	4 cut(s)	17, 343, 866, 905
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	6 cut(s)	474, 477, 554, 583, 594, 951
GluI	GCNGC	6 cut(s)	474, 477, 554, 583, 594, 951
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	709, 1243
HapII	CCGG	2 cut(s)	387, 1136
HgaI	GACGC	1 cut(s)	690
Hin1I	GRCGYC	1 cut(s)	701
Hin1II	CATG	8 cut(s)	119, 208, 491, 655, 760, 836, 841, 890
HindIII	AAGCTT	2 cut(s)	174, 779
HinfI	GANTC	8 cut(s)	40, 121, 157, 457, 529, 678, 1142, 1157
HpaII	CCGG	2 cut(s)	387, 1136
HphI	GGTGA	1 cut(s)	1207
Hpy166II	GTNNAC	2 cut(s)	109, 442
Hpy188III	TCNNGA	5 cut(s)	31, 169, 588, 869, 944
Hpy8I	GTNNAC	2 cut(s)	109, 442
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	6 cut(s)	434, 730, 1186, 1198, 1204, 1254
HpyCH4III	ACNGT	4 cut(s)	88, 604, 639, 748
HpyCH4IV	ACGT	7 cut(s)	210, 435, 792, 928, 1106, 1113, 1122
HpyCH4V	TGCA	5 cut(s)	432, 476, 561, 643, 817
HpyF10VI	GCNNNNNNNGC	1 cut(s)	843
HpyF3I	CTNAG	5 cut(s)	325, 447, 910, 1021, 1277
HpySE526I	ACGT	7 cut(s)	210, 435, 792, 928, 1106, 1113, 1122
Hsp92I	GRCGYC	1 cut(s)	701
Hsp92II	CATG	8 cut(s)	119, 208, 491, 655, 760, 836, 841, 890
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	165, 243, 648
LmnI	GCTCC	2 cut(s)	550, 1213
Lsp1109I	GCAGC	5 cut(s)	460, 488, 540, 580, 962
LweI	GCATC	3 cut(s)	70, 652, 977
MaeII	ACGT	7 cut(s)	210, 435, 792, 928, 1106, 1113, 1122
MaeIII	GTNAC	6 cut(s)	490, 715, 751, 1114, 1123, 1280
MalI	GATC	3 cut(s)	167, 245, 650
MboI	GATC	3 cut(s)	165, 243, 648
MboII	GAAGA	7 cut(s)	177, 598, 1007, 1013, 1210, 1213, 1279
MhlI	GDGCHC	2 cut(s)	147, 369
MluCI	AATT	3 cut(s)	499, 872, 989
MlyI	GAGTC	4 cut(s)	115, 451, 687, 1166
MseI	TTAA	1 cut(s)	1055
MslI	CAYNNNNRTG	3 cut(s)	152, 722, 891
MspA1I	CMGCKG	2 cut(s)	479, 582
MspI	CCGG	2 cut(s)	387, 1136
MspR9I	CCNGG	2 cut(s)	387, 1136
MvnI	CGCG	1 cut(s)	1084
MwoI	GCNNNNNNNGC	1 cut(s)	843
NciI	CCSGG	2 cut(s)	387, 1136
NcoI	CCATGG	1 cut(s)	832
NdeII	GATC	3 cut(s)	165, 243, 648
NlaIII	CATG	8 cut(s)	119, 208, 491, 655, 760, 836, 841, 890
NmuCI	GTSAC	3 cut(s)	490, 715, 1123
PceI	AGGCCT	1 cut(s)	1243
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 1119
PfeI	GAWTC	4 cut(s)	40, 157, 529, 1142
PflFI	GACNNNGTC	2 cut(s)	387, 794
PflMI	CCANNNNNTGG	1 cut(s)	838
PkrI	GCNGC	6 cut(s)	475, 478, 555, 584, 595, 952
PleI	GAGTC	4 cut(s)	115, 451, 686, 1165
PpsI	GAGTC	4 cut(s)	115, 451, 686, 1165
Psp124BI	GAGCTC	1 cut(s)	369
Psp1406I	AACGTT	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	296
PspPI	GGNCC	2 cut(s)	708, 762
PsrI	GAACNNNNNNTAC	6 cut(s)	396, 428, 812, 844, 918, 950
PstI	CTGCAG	1 cut(s)	478
PsyI	GACNNNGTC	2 cut(s)	387, 794
RsaI	GTAC	3 cut(s)	138, 802, 1234
RsaNI	GTAC	3 cut(s)	137, 801, 1233
RseI	CAYNNNNRTG	3 cut(s)	152, 722, 891
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	1055
SatI	GCNGC	6 cut(s)	474, 477, 554, 583, 594, 951
Sau3AI	GATC	3 cut(s)	165, 243, 648
Sau96I	GGNCC	2 cut(s)	708, 762
SchI	GAGTC	4 cut(s)	115, 451, 687, 1166
ScrFI	CCNGG	2 cut(s)	387, 1136
SduI	GDGCHC	2 cut(s)	147, 369
SfaNI	GCATC	3 cut(s)	70, 652, 977
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	762
SmiMI	CAYNNNNRTG	3 cut(s)	152, 722, 891
SmlI	CTYRAG	2 cut(s)	255, 586
SmoI	CTYRAG	2 cut(s)	255, 586
Sse9I	AATT	3 cut(s)	499, 872, 989
SseBI	AGGCCT	1 cut(s)	1243
SsiI	CCGC	2 cut(s)	479, 582
SstI	GAGCTC	1 cut(s)	369
StuI	AGGCCT	1 cut(s)	1243
StyD4I	CCNGG	2 cut(s)	385, 1134
StyI	CCWWGG	1 cut(s)	832
TaaI	ACNGT	4 cut(s)	88, 604, 639, 748
TaiI	ACGT	7 cut(s)	213, 438, 795, 931, 1109, 1116, 1125
TaqI	TCGA	1 cut(s)	225
TaqII	GACCGA	1 cut(s)	1020
TasI	AATT	3 cut(s)	499, 872, 989
TatI	WGTACW	2 cut(s)	136, 800
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	4 cut(s)	40, 157, 529, 1142
Tru1I	TTAA	1 cut(s)	1055
Tru9I	TTAA	1 cut(s)	1055
TscAI	CASTG	6 cut(s)	91, 154, 349, 434, 718, 861
TseFI	GTSAC	3 cut(s)	490, 715, 1123
TseI	GCWGC	5 cut(s)	473, 476, 553, 593, 950
Tsp45I	GTSAC	3 cut(s)	490, 715, 1123
TspDTI	ATGAA	7 cut(s)	27, 53, 170, 193, 295, 476, 740
TspGWI	ACGGA	2 cut(s)	509, 872
TspRI	CASTG	6 cut(s)	91, 154, 349, 434, 718, 861
Tth111I	GACNNNGTC	2 cut(s)	387, 794
Van91I	CCANNNNNTGG	1 cut(s)	838
VpaK11BI	GGWCC	1 cut(s)	762
XapI	RAATTY	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.