Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003523

Physical Location & Seq

Genomic Coordinates Reverse (-)

430196 .. 432866

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00650.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGACGATGAGTACGCCAAGTTCGTCAGGAGGATGAACCCACCGAGAGTTGTGATCGATAACAATTCTTGCGAGGATGCCACCGTTATCCAGGTTGACAGTGTCAACAAACATGGAATTCTGCTGGATGTTGTCCAAGTGCTCGCCGATGTGAACCTTGTAATAACCAAAGCTTATATCTCATCTGATGGTGTATGGTTCATGGATGTGTTCAATGTGATTGACCGTGACGGGAAAAAAATCAGAGACAAGGACATTATCAATTATATTCAAATGAGACTTGAAAGCAATGGTGGCTTTGTACCCTCTATGAGAGACTCCGTCGGCATGATGCCCTCAGAAGAGTACACCTCCATTGAGCTCAGCGGCACCGACAGGCCTGGCTTATTGTCTGAAGTGTGTGCGGTTCTTGCAGACCTTCACTGTAATGTGGTAAACGCTGAGATATGGACACACAACACTAGAGCTGCAGCTGTAGTTCATGTCACAGATGATTCCACTGGCTGCGCAAGTGAAGATCCAATCCGTCTCGCTACAATTAAGGAGTTGCTTTGCAATGTCCTCAAAGTAAACAGTGAATTGAAGGCTGCTAAAATGACACTTGCAACCCCTGGAGTTACAAACAGAGATAGAAGGTTACATCAGATTATGTTTGCTGACAGGGATTATGAAAGGGTTGAAAGAGCAGAACTACGGAGAGTTGAGGATAAGGGCTCAAAACCCCATGTAACCGCGTTGGATTGCAGCCAGAAGGATTACACTGTCATTACCATGAGGTCAAAAGATCGACCAAAGTTGTTATTTGACATCATCTGCACTTTAACAGACATGCAGTATGTGGTTTTTCACGGAATGGTCAATACTGGGAGGACGGAAGCTTATCAGGAATTTTACATTCGACATGTTGATGGGCTTCCTATCAACTCAGAAGCTGAGCGAGAACGTGTTGTACAGTGCCTTGAAGCAGCCATTGAAAGGCGGGCATCGGAGGTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

333

Amino Acids

37.57

Weight (kDa)

5.39

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990
fragaria_vesca	FvH4_6g53840
malus_domestica	MD09G1008100.v1.1 MD17G1002600.v1.1
prunus_persica	Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1
pyrus_communis	pycom111g00650 pycom17g00680
rosa_chinensis	RchiOBHm_Chr2g0175981
rosa_laevigata	RLG00000022370
rosa_multiflora	Rmu_co8433007.1_g000001 Rmu_sc0012513.1_g000007 Rmu_sc0018801.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076890
rosa_rugosa	Rorug02G0589100 Rorug02G0589100
rosa_samantha	Rh2AG668300 Rh2BG679800 Rh2CG642700 Rh2DG693500
rosa_wichuraiana	Rw2G054790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	368
AccII	CGCG	1 cut(s)	734
AciI	CCGC	5 cut(s)	366, 404, 732, 979, 994
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	2 cut(s)	117, 887
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	4 cut(s)	14, 303, 347, 951
AfiI	CCNNNNNNNGG	1 cut(s)	975
AflIII	ACRYGT	2 cut(s)	901, 943
AgsI	TTSAA	7 cut(s)	214, 272, 284, 583, 680, 962, 974
AjnI	CCWGG	3 cut(s)	90, 379, 610
AluBI	AGCT	6 cut(s)	173, 361, 467, 473, 878, 932
AluI	AGCT	6 cut(s)	173, 361, 467, 473, 878, 932
Alw21I	GWGCWC	2 cut(s)	144, 363
Alw26I	GTCTC	4 cut(s)	240, 271, 309, 533
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	932
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	6 cut(s)	467, 470, 504, 587, 744, 965
ApoI	RAATTY	2 cut(s)	117, 887
AspLEI	GCGC	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	2 cut(s)	363, 716
Bbv12I	GWGCWC	2 cut(s)	144, 363
BbvI	GCAGC	6 cut(s)	454, 482, 491, 574, 756, 977
BccI	CCATC	2 cut(s)	182, 902
BciT130I	CCWGG	3 cut(s)	92, 381, 612
BcoDI	GTCTC	4 cut(s)	240, 271, 309, 533
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	2 cut(s)	468, 474
BisI	GCNGC	7 cut(s)	367, 468, 471, 505, 588, 745, 966
BlpI	GCTNAGC	2 cut(s)	362, 933
BlsI	GCNGC	7 cut(s)	368, 469, 472, 506, 589, 746, 967
Bme1390I	CCNGG	3 cut(s)	92, 381, 612
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	3 cut(s)	92, 381, 612
BmrI	ACTGGG	1 cut(s)	873
BmsI	GCATC	3 cut(s)	67, 321, 992
BmuI	ACTGGG	1 cut(s)	873
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	1 cut(s)	633
Bpu1102I	GCTNAGC	2 cut(s)	362, 933
Bsa29I	ATCGAT	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	610
BsaXI	ACNNNNNCTCC	1 cut(s)	980
Bsc4I	CCNNNNNNNGG	1 cut(s)	975
Bse1I	ACTGG	2 cut(s)	505, 868
Bse3DI	GCAATG	2 cut(s)	295, 562
BseBI	CCWGG	3 cut(s)	92, 381, 612
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	4 cut(s)	39, 82, 133, 211
BseLI	CCNNNNNNNGG	1 cut(s)	975
BseMI	GCAATG	2 cut(s)	295, 562
BseMII	CTCAG	5 cut(s)	351, 376, 432, 924, 939
BseNI	ACTGG	2 cut(s)	505, 868
BseXI	GCAGC	6 cut(s)	454, 482, 491, 574, 756, 977
BsgI	GTGCAG	1 cut(s)	799
Bsh1236I	CGCG	1 cut(s)	734
BshFI	GGCC	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	144, 363
BslI	CCNNNNNNNGG	1 cut(s)	975
BsmAI	GTCTC	4 cut(s)	240, 271, 309, 533
BsmBI	CGTCTC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	379
Bsp1286I	GDGCHC	3 cut(s)	144, 363, 716
Bsp1407I	TGTACA	1 cut(s)	949
Bsp143I	GATC	3 cut(s)	54, 517, 784
Bsp1720I	GCTNAGC	2 cut(s)	362, 933
BspACI	CCGC	5 cut(s)	366, 404, 732, 979, 994
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	5 cut(s)	350, 375, 433, 925, 938
BspDI	ATCGAT	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	734
BspLI	GGNNCC	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	368
BsrDI	GCAATG	2 cut(s)	295, 562
BsrGI	TGTACA	1 cut(s)	949
BsrI	ACTGG	2 cut(s)	505, 868
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	3 cut(s)	54, 517, 784
Bst2UI	CCWGG	3 cut(s)	92, 381, 612
Bst4CI	ACNGT	7 cut(s)	85, 101, 227, 425, 575, 763, 954
Bst6I	CTCTTC	1 cut(s)	336
BstAUI	TGTACA	1 cut(s)	949
BstC8I	GCNNGC	2 cut(s)	144, 981
BstDEI	CTNAG	5 cut(s)	337, 362, 441, 925, 933
BstF5I	GGATG	4 cut(s)	39, 82, 133, 211
BstFNI	CGCG	1 cut(s)	734
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	3 cut(s)	57, 520, 787
BstMAI	GTCTC	4 cut(s)	240, 271, 309, 533
BstMBI	GATC	3 cut(s)	54, 517, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 410
BstNI	CCWGG	3 cut(s)	92, 381, 612
BstNSI	RCATGY	2 cut(s)	832, 905
BstSCI	CCNGG	3 cut(s)	90, 379, 610
BstSFI	CTRYAG	2 cut(s)	468, 474
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	6 cut(s)	454, 482, 491, 574, 756, 977
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	379
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	4 cut(s)	39, 82, 133, 211
BtsIMutI	CAGTG	6 cut(s)	106, 421, 498, 580, 759, 959
Cac8I	GCNNGC	2 cut(s)	144, 981
CaiI	CAGNNNCTG	1 cut(s)	932
CfoI	GCGC	1 cut(s)	509
ClaI	ATCGAT	1 cut(s)	57
Csp6I	GTAC	4 cut(s)	13, 302, 346, 950
CviAII	CATG	8 cut(s)	113, 202, 328, 482, 725, 772, 829, 902
CviQI	GTAC	4 cut(s)	13, 302, 346, 950
DdeI	CTNAG	5 cut(s)	337, 362, 441, 925, 933
DpnI	GATC	3 cut(s)	56, 519, 786
DpnII	GATC	3 cut(s)	54, 517, 784
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Ecl136II	GAGCTC	1 cut(s)	361
Eco147I	AGGCCT	1 cut(s)	379
Eco24I	GRGCYC	2 cut(s)	363, 716
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	3 cut(s)	90, 379, 610
EcoT38I	GRGCYC	2 cut(s)	363, 716
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	8 cut(s)	116, 205, 331, 485, 728, 775, 832, 905
FatI	CATG	8 cut(s)	112, 201, 327, 481, 724, 771, 828, 901
FauI	CCCGC	1 cut(s)	972
Fnu4HI	GCNGC	7 cut(s)	367, 468, 471, 505, 588, 745, 966
FokI	GGATG	4 cut(s)	46, 89, 140, 218
FriOI	GRGCYC	2 cut(s)	363, 716
Fsp4HI	GCNGC	7 cut(s)	367, 468, 471, 505, 588, 745, 966
FspBI	CTAG	1 cut(s)	462
FspI	TGCGCA	1 cut(s)	508
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	7 cut(s)	367, 468, 471, 505, 588, 745, 966
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	1 cut(s)	379
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	8 cut(s)	116, 205, 331, 485, 728, 775, 832, 905
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HincII	GTYRAC	2 cut(s)	97, 106
HindII	GTYRAC	2 cut(s)	97, 106
HindIII	AAGCTT	2 cut(s)	171, 876
HinfI	GANTC	2 cut(s)	317, 494
Hpy166II	GTNNAC	6 cut(s)	97, 106, 154, 348, 436, 571
Hpy188I	TCNGA	7 cut(s)	187, 245, 340, 394, 645, 928, 988
Hpy188III	TCNNGA	2 cut(s)	28, 884
Hpy8I	GTNNAC	6 cut(s)	97, 106, 154, 348, 436, 571
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	4 cut(s)	428, 577, 627, 745
HpyCH4III	ACNGT	7 cut(s)	85, 101, 227, 425, 575, 763, 954
HpyCH4IV	ACGT	1 cut(s)	943
HpyCH4V	TGCA	7 cut(s)	413, 470, 555, 605, 744, 816, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 410
HpyF3I	CTNAG	5 cut(s)	337, 362, 441, 925, 933
HpySE526I	ACGT	1 cut(s)	943
Hsp92II	CATG	8 cut(s)	116, 205, 331, 485, 728, 775, 832, 905
HspAI	GCGC	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	54, 517, 784
Lsp1109I	GCAGC	6 cut(s)	454, 482, 491, 574, 756, 977
LweI	GCATC	3 cut(s)	67, 321, 992
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	943
MaeIII	GTNAC	5 cut(s)	227, 484, 616, 636, 727
MalI	GATC	3 cut(s)	56, 519, 786
MboI	GATC	3 cut(s)	54, 517, 784
MboII	GAAGA	2 cut(s)	353, 527
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	3 cut(s)	144, 363, 716
MluCI	AATT	6 cut(s)	64, 117, 262, 537, 578, 887
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	717
MseI	TTAA	2 cut(s)	540, 821
MslI	CAYNNNNRTG	4 cut(s)	206, 426, 770, 906
MspA1I	CMGCKG	2 cut(s)	366, 473
MspR9I	CCNGG	3 cut(s)	92, 381, 612
MvaI	CCWGG	3 cut(s)	92, 381, 612
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	2 cut(s)	294, 410
NdeII	GATC	3 cut(s)	54, 517, 784
NlaIII	CATG	8 cut(s)	116, 205, 331, 485, 728, 775, 832, 905
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	227, 484
NsbI	TGCGCA	1 cut(s)	508
NspI	RCATGY	2 cut(s)	832, 905
PceI	AGGCCT	1 cut(s)	379
PciI	ACATGT	1 cut(s)	901
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	494
PflFI	GACNNNGTC	2 cut(s)	101, 320
PkrI	GCNGC	7 cut(s)	368, 469, 472, 506, 589, 746, 967
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PscI	ACATGT	1 cut(s)	901
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	3 cut(s)	90, 379, 610
PspGI	CCWGG	3 cut(s)	90, 379, 610
PspN4I	GGNNCC	1 cut(s)	370
PsrI	GAACNNNNNNTAC	3 cut(s)	37, 933, 965
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	932
PsuI	RGATCY	1 cut(s)	517
PsyI	GACNNNGTC	2 cut(s)	101, 320
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	4 cut(s)	14, 303, 347, 951
RsaNI	GTAC	4 cut(s)	13, 302, 346, 950
RseI	CAYNNNNRTG	4 cut(s)	206, 426, 770, 906
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	540, 821
SatI	GCNGC	7 cut(s)	367, 468, 471, 505, 588, 745, 966
Sau3AI	GATC	3 cut(s)	54, 517, 784
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	3 cut(s)	92, 381, 612
SduI	GDGCHC	3 cut(s)	144, 363, 716
SfaNI	GCATC	3 cut(s)	67, 321, 992
SfcI	CTRYAG	2 cut(s)	468, 474
SmiMI	CAYNNNNRTG	4 cut(s)	206, 426, 770, 906
Sse9I	AATT	6 cut(s)	64, 117, 262, 537, 578, 887
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	5 cut(s)	366, 404, 732, 979, 994
SspMI	CTAG	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	3 cut(s)	90, 379, 610
TaaI	ACNGT	7 cut(s)	85, 101, 227, 425, 575, 763, 954
TaiI	ACGT	1 cut(s)	946
TaqI	TCGA	3 cut(s)	57, 787, 898
TasI	AATT	6 cut(s)	64, 117, 262, 537, 578, 887
TatI	WGTACW	2 cut(s)	345, 949
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	2 cut(s)	540, 821
Tru9I	TTAA	2 cut(s)	540, 821
TscAI	CASTG	6 cut(s)	106, 428, 505, 580, 766, 959
TseFI	GTSAC	2 cut(s)	227, 484
TseI	GCWGC	6 cut(s)	467, 470, 504, 587, 744, 965
Tsp45I	GTSAC	2 cut(s)	227, 484
TspDTI	ATGAA	4 cut(s)	50, 190, 470, 684
TspGWI	ACGGA	5 cut(s)	310, 515, 709, 864, 887
TspRI	CASTG	6 cut(s)	106, 428, 505, 580, 766, 959
Tth111I	GACNNNGTC	2 cut(s)	101, 320
XapI	RAATTY	2 cut(s)	117, 887
XceI	RCATGY	2 cut(s)	832, 905
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.