Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012513.1

Orthogroup ID

OG0003523

Physical Location & Seq

Genomic Coordinates Reverse (-)

41717 .. 44063

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012513.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atggatgatgagtatgctaagttcgtgaggcggatgaacccacccagagttgtgattgacaatgattcttgtgaggatgctactattatccaggttgacagtttcaacaaacatggaattctcctagatgttgtccaagtgcttgcagatgtgaaccttgtcataacaaaagcttatatctcatctgatggagtatggttcatggatgtgttcaacgtgattgaccgtgacggcaaaaaaatcagagacaaggacattatcaattatatacaaattcttaggattgggcttgcagtcccctcaagggacaacaatgggatttctctttgggaacttgttcaaagctcgaagtttccagaggattatttcccctttacccaatcaccttccaccttgctgtgttccggtgaccagtggccggcgcggtctccggcgaccggactccggcgaacggcgaccggtgaccggattcaggggaccgatatcactcggatattcagggagaacagtttgtctatcaaacgagcagaaatttcaactaaaggtggaaaagctttggacactttctatgtcacagatgtgacaggaaacccagttgatcccaagatgattgattcaattcgcagagagattggccagaccatactgcaggtgaaatgcaattcaacccctccaccaccaaagtcccctcaagggacaacaatgggatttctctttgggaacttgttcaaagctcgaagtttccagagtcttaaattaatcagatcctactcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

258

Amino Acids

28.96

Weight (kDa)

8.7

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990
fragaria_vesca	FvH4_6g53840
malus_domestica	MD09G1008100.v1.1 MD17G1002600.v1.1
prunus_persica	Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1
pyrus_communis	pycom111g00650 pycom17g00680
rosa_chinensis	RchiOBHm_Chr2g0175981
rosa_laevigata	RLG00000022370
rosa_multiflora	Rmu_co8433007.1_g000001 Rmu_sc0012513.1_g000007 Rmu_sc0018801.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076890
rosa_rugosa	Rorug02G0589100 Rorug02G0589100
rosa_samantha	Rh2AG668300 Rh2BG679800 Rh2CG642700 Rh2DG693500
rosa_wichuraiana	Rw2G054790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	640
Acc36I	ACCTGC	1 cut(s)	640
AccII	CGCG	1 cut(s)	424
AciI	CCGC	2 cut(s)	31, 424
AclWI	GGATC	2 cut(s)	593, 759
AcoI	YGGCCR	2 cut(s)	416, 634
AcsI	RAATTY	3 cut(s)	117, 273, 531
AfiI	CCNNNNNNNGG	8 cut(s)	304, 418, 437, 444, 451, 465, 472, 693
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	7 cut(s)	106, 214, 341, 537, 618, 666, 730
AjnI	CCWGG	1 cut(s)	90
AleI	CACNNNNGTG	1 cut(s)	578
AluBI	AGCT	4 cut(s)	173, 345, 554, 734
AluI	AGCT	4 cut(s)	173, 345, 554, 734
Alw26I	GTCTC	2 cut(s)	240, 432
AlwI	GGATC	2 cut(s)	593, 759
AoxI	GGCC	2 cut(s)	416, 634
ApoI	RAATTY	3 cut(s)	117, 273, 531
AseI	ATTAAT	1 cut(s)	758
AsiGI	ACCGGT	1 cut(s)	458
Asp700I	GAANNNNTTC	2 cut(s)	336, 725
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	477
AsuHPI	GGTGA	4 cut(s)	375, 419, 473, 664
AvaII	GGWCC	1 cut(s)	477
BalI	TGGCCA	1 cut(s)	636
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	247, 468
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	240, 432
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	647
BfuAI	ACCTGC	1 cut(s)	640
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	587
BpuEI	CTTGAG	2 cut(s)	286, 675
BsaI	GGTCTC	1 cut(s)	432
BsaWI	WCCGGW	4 cut(s)	404, 437, 458, 465
Bsc4I	CCNNNNNNNGG	8 cut(s)	304, 418, 437, 444, 451, 465, 472, 693
Bse118I	RCCGGY	2 cut(s)	418, 458
Bse1I	ACTGG	2 cut(s)	412, 593
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	4 cut(s)	10, 39, 82, 211
BseLI	CCNNNNNNNGG	8 cut(s)	304, 418, 437, 444, 451, 465, 472, 693
BseNI	ACTGG	2 cut(s)	412, 593
Bsh1236I	CGCG	1 cut(s)	424
Bsh1285I	CGRYCG	2 cut(s)	438, 459
BshFI	GGCC	2 cut(s)	418, 636
BshTI	ACCGGT	1 cut(s)	458
BsiEI	CGRYCG	2 cut(s)	438, 459
BsiSI	CCGG	7 cut(s)	405, 419, 431, 438, 445, 459, 466
BslFI	GGGAC	5 cut(s)	281, 320, 490, 670, 709
BslI	CCNNNNNNNGG	8 cut(s)	304, 418, 437, 444, 451, 465, 472, 693
BsmAI	GTCTC	2 cut(s)	240, 432
BsmFI	GGGAC	5 cut(s)	281, 320, 490, 670, 709
BsnI	GGCC	2 cut(s)	418, 636
Bso31I	GGTCTC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	598, 764
BspACI	CCGC	2 cut(s)	31, 424
BspANI	GGCC	2 cut(s)	418, 636
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	478
BspMAI	CTGCAG	1 cut(s)	651
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	2 cut(s)	593, 759
BspTNI	GGTCTC	1 cut(s)	432
BsrFI	RCCGGY	2 cut(s)	418, 458
BsrI	ACTGG	2 cut(s)	412, 593
BssAI	RCCGGY	2 cut(s)	418, 458
BssMI	GATC	2 cut(s)	598, 764
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	3 cut(s)	101, 227, 509
BstC8I	GCNNGC	3 cut(s)	144, 291, 420
BstDEI	CTNAG	3 cut(s)	18, 278, 774
BstEII	GGTNACC	2 cut(s)	407, 461
BstF5I	GGATG	4 cut(s)	10, 39, 82, 211
BstFNI	CGCG	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	601, 767
BstMAI	GTCTC	2 cut(s)	240, 432
BstMBI	GATC	2 cut(s)	598, 764
BstMCI	CGRYCG	2 cut(s)	438, 459
BstNI	CCWGG	1 cut(s)	92
BstPI	GGTNACC	2 cut(s)	407, 461
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	647
BstUI	CGCG	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	764
BstYI	RGATCY	1 cut(s)	764
BsuRI	GGCC	2 cut(s)	418, 636
BtsCI	GGATG	4 cut(s)	10, 39, 82, 211
BtsIMutI	CAGTG	1 cut(s)	419
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	3 cut(s)	144, 291, 420
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	2 cut(s)	418, 458
Cfr13I	GGNCC	1 cut(s)	477
CspAI	ACCGGT	1 cut(s)	458
CviAII	CATG	2 cut(s)	113, 202
CviJI	RGCY	7 cut(s)	173, 289, 345, 418, 554, 636, 734
CviKI_1	RGCY	7 cut(s)	173, 289, 345, 418, 554, 636, 734
DdeI	CTNAG	3 cut(s)	18, 278, 774
DpnI	GATC	2 cut(s)	600, 766
DpnII	GATC	2 cut(s)	598, 764
EaeI	YGGCCR	2 cut(s)	416, 634
EciI	GGCGGA	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	477
Eco91I	GGTNACC	2 cut(s)	407, 461
EcoO65I	GGTNACC	2 cut(s)	407, 461
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	484
FaeI	CATG	2 cut(s)	116, 205
FaqI	GGGAC	5 cut(s)	281, 320, 490, 670, 709
FatI	CATG	2 cut(s)	112, 201
FokI	GGATG	4 cut(s)	17, 46, 89, 218
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	418, 636
HapII	CCGG	7 cut(s)	405, 419, 431, 438, 445, 459, 466
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	2 cut(s)	116, 205
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	2 cut(s)	171, 552
HinfI	GANTC	5 cut(s)	65, 441, 469, 614, 748
HpaII	CCGG	7 cut(s)	405, 419, 431, 438, 445, 459, 466
HphI	GGTGA	4 cut(s)	375, 419, 473, 664
Hpy166II	GTNNAC	2 cut(s)	97, 154
Hpy188I	TCNGA	4 cut(s)	187, 245, 492, 764
Hpy188III	TCNNGA	3 cut(s)	25, 356, 745
Hpy8I	GTNNAC	2 cut(s)	97, 154
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	3 cut(s)	101, 227, 509
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	4 cut(s)	146, 293, 649, 660
HpyF3I	CTNAG	3 cut(s)	18, 278, 774
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	116, 205
HspAI	GCGC	1 cut(s)	422
KroI	GCCGGC	1 cut(s)	418
KroNI	GCCGGC	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	598, 764
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	5 cut(s)	227, 407, 461, 571, 580
MalI	GATC	2 cut(s)	600, 766
MboI	GATC	2 cut(s)	598, 764
MflI	RGATCY	1 cut(s)	764
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	7 cut(s)	117, 262, 273, 531, 618, 661, 755
MluNI	TGGCCA	1 cut(s)	636
MlyI	GAGTC	2 cut(s)	435, 757
MnlI	CCTC	6 cut(s)	21, 67, 310, 352, 681, 699
Mox20I	TGGCCA	1 cut(s)	636
MroNI	GCCGGC	1 cut(s)	418
MroXI	GAANNNNTTC	2 cut(s)	336, 725
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	2 cut(s)	753, 758
MslI	CAYNNNNRTG	2 cut(s)	206, 578
Msp20I	TGGCCA	1 cut(s)	636
MspI	CCGG	7 cut(s)	405, 419, 431, 438, 445, 459, 466
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	424
NaeI	GCCGGC	1 cut(s)	420
NdeII	GATC	2 cut(s)	598, 764
NgoMIV	GCCGGC	1 cut(s)	418
NlaIII	CATG	2 cut(s)	116, 205
NlaIV	GGNNCC	1 cut(s)	478
NmuCI	GTSAC	5 cut(s)	227, 407, 461, 571, 580
OliI	CACNNNNGTG	1 cut(s)	578
PaqCI	CACCTGC	1 cut(s)	640
PdiI	GCCGGC	1 cut(s)	420
PdmI	GAANNNNTTC	2 cut(s)	336, 725
PfeI	GAWTC	3 cut(s)	65, 469, 614
PinAI	ACCGGT	1 cut(s)	458
PleI	GAGTC	2 cut(s)	435, 756
PpsI	GAGTC	2 cut(s)	435, 756
PshBI	ATTAAT	1 cut(s)	758
Psp6I	CCWGG	1 cut(s)	90
PspEI	GGTNACC	2 cut(s)	407, 461
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	478
PspPI	GGNCC	1 cut(s)	477
PsrI	GAACNNNNNNTAC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	651
PsuI	RGATCY	1 cut(s)	764
RseI	CAYNNNNRTG	2 cut(s)	206, 578
SaqAI	TTAA	2 cut(s)	753, 758
Sau3AI	GATC	2 cut(s)	598, 764
Sau96I	GGNCC	1 cut(s)	477
SchI	GAGTC	2 cut(s)	435, 757
ScrFI	CCNGG	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	647
SinI	GGWCC	1 cut(s)	477
SmiMI	CAYNNNNRTG	2 cut(s)	206, 578
SmlI	CTYRAG	2 cut(s)	301, 690
SmoI	CTYRAG	2 cut(s)	301, 690
Sse9I	AATT	7 cut(s)	117, 262, 273, 531, 618, 661, 755
SsiI	CCGC	2 cut(s)	31, 424
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	101, 227, 509
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	347, 736
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	7 cut(s)	117, 262, 273, 531, 618, 661, 755
TfiI	GAWTC	3 cut(s)	65, 469, 614
Tru1I	TTAA	2 cut(s)	753, 758
Tru9I	TTAA	2 cut(s)	753, 758
TscAI	CASTG	1 cut(s)	419
TseFI	GTSAC	5 cut(s)	227, 407, 461, 571, 580
Tsp45I	GTSAC	5 cut(s)	227, 407, 461, 571, 580
TspDTI	ATGAA	2 cut(s)	50, 190
TspRI	CASTG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	477
VspI	ATTAAT	1 cut(s)	758
XapI	RAATTY	3 cut(s)	117, 273, 531
XmnI	GAANNNNTTC	2 cut(s)	336, 725
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.