Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003523

Physical Location & Seq

Genomic Coordinates Forward (+)

82918914 .. 82921514

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022370

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGATGATGAGTATGCTAAGTTCGTGAGGCGGATGAACCCACCCAGTTTTTTTTTTTTTTTGAATAAGTATTTTGAATCTGGAATTTTACATGTTCTTATTAGACTTGAAAGCAATGCCAGCTTTGTACCGTCTATGACAGATTCTGTTGGTGTGACGCCCTCGGAAGAGCATACCTTAATTGAGCTCAGTGGTACTGATAGAACTGGTCTATTGTCAGAAGTGTGTGCCGTTCTTGCAGACCTTCACTGTAATGTGGTAAATGCTGAGATATGGACACACAATGCCAGAGCTGCTGCTGTAGTTCATGTCACAGATGAAACCACTGGTTGCGCAATTAAAGATCCAGCGCGCCTCGCTTCAATAAAGGAGCTGCTTTGCAATGTCCTCAGAGGAAACAATGAGTTGAAGGCTGCCAAAATGACACTTGCAACCTCTGGAGTTACAAATAGAGATAGAAGGTTGCATCAGATTATGTTTGCCGACAGAGATTATGAAAGGGTTGGAAGAGCTGAATTACGCAGAGTTGAGGATAAGGGCTCAAGACCTCAAGTGACTGCCTTTGATTGCAGTCAGAAGGATTACACTGTCATTACTATGAGGGCAAAAGATCGACCAAAATTGTTGTTTGACATCATTTGCACTTTAACGGACATGCAATATGTGGTATTCCATGGAATGGTCAATACAGGGAGGACAGAAGCTTATCAGGAGTTTTATATTCGACATGTTGATGGAGTTCCTATAAGCTCAGAAGCCGAGCGAGAACGTGTTGTGCAGTGTCTTGAAGCAGCCATTGAAAGGCGGGCATCTGAGGGGCTTGAACTACAACTGTGCACTGATGACCGGGTTGGACTTCTCTCAGATATCACTCGGATATTCAGGGAGAACAGTTTGTCTATCAAACGAGCAGAAATTTCAACTAAAGGTGGAAAAGCTTTGGACACTTTCTATGTCACAGATGTGACAGGAAACCCAGTTGATCCCAAGATGATTGATTCAATTCGCAGAGAGATTGGCCAGACCATACTGCAGGTGAAATGCAATTCAACCCCTCCACCACCAAAGTCCCCTCAAGGGACAACAATGGGATTTCTATTTGGAAACTTGTTCAAAGCTCGAAGTTTCCAGAGTCTTAAATTAATCAGATCCTACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

387

Amino Acids

43.37

Weight (kDa)

7.07

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	60 - 107	9.6e-09	ACT domain
ACT	PF01842	281 - 338	5e-09	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990
fragaria_vesca	FvH4_6g53840
malus_domestica	MD09G1008100.v1.1 MD17G1002600.v1.1
prunus_persica	Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1
pyrus_communis	pycom111g00650 pycom17g00680
rosa_chinensis	RchiOBHm_Chr2g0175981
rosa_laevigata	RLG00000022370
rosa_multiflora	Rmu_co8433007.1_g000001 Rmu_sc0012513.1_g000007 Rmu_sc0018801.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076890
rosa_rugosa	Rorug02G0589100 Rorug02G0589100
rosa_samantha	Rh2AG668300 Rh2BG679800 Rh2CG642700 Rh2DG693500
rosa_wichuraiana	Rw2G054790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1024
Acc16I	TGCGCA	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	1024
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccII	CGCG	1 cut(s)	352
AciI	CCGC	2 cut(s)	31, 805
AclWI	GGATC	3 cut(s)	338, 977, 1143
AcoI	YGGCCR	1 cut(s)	1018
AcsI	RAATTY	2 cut(s)	84, 915
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	2 cut(s)	129, 196
AfiI	CCNNNNNNNGG	3 cut(s)	679, 801, 1077
AflIII	ACRYGT	3 cut(s)	91, 727, 769
AleI	CACNNNNGTG	1 cut(s)	962
AluBI	AGCT	9 cut(s)	123, 187, 293, 373, 512, 704, 750, 938, 1118
AluI	AGCT	9 cut(s)	123, 187, 293, 373, 512, 704, 750, 938, 1118
Alw21I	GWGCWC	2 cut(s)	189, 839
Alw44I	GTGCAC	1 cut(s)	835
AlwI	GGATC	3 cut(s)	338, 977, 1143
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	1018
ApaLI	GTGCAC	1 cut(s)	835
ApeKI	GCWGC	5 cut(s)	293, 296, 373, 413, 791
ApoI	RAATTY	2 cut(s)	84, 915
AseI	ATTAAT	1 cut(s)	1142
AspLEI	GCGC	3 cut(s)	335, 352, 354
AsuC2I	CCSGG	1 cut(s)	848
AsuHPI	GGTGA	1 cut(s)	1048
BaeGI	GKGCMC	1 cut(s)	839
BalI	TGGCCA	1 cut(s)	1020
BanII	GRGCYC	2 cut(s)	189, 542
Bbv12I	GWGCWC	2 cut(s)	189, 839
BbvI	GCAGC	5 cut(s)	280, 283, 360, 400, 803
BccI	CCATC	1 cut(s)	728
BceAI	ACGGC	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	848
BfmI	CTRYAG	2 cut(s)	300, 1031
BfuAI	ACCTGC	1 cut(s)	1024
BisI	GCNGC	5 cut(s)	294, 297, 374, 414, 792
BlsI	GCNGC	5 cut(s)	295, 298, 375, 415, 793
Bme1390I	CCNGG	1 cut(s)	848
BmrFI	CCNGG	1 cut(s)	848
BmrI	ACTGGG	2 cut(s)	39, 971
BmsI	GCATC	2 cut(s)	475, 818
BmuI	ACTGGG	2 cut(s)	39, 971
BpmI	CTGGAG	1 cut(s)	459
BpuEI	CTTGAG	3 cut(s)	526, 534, 1059
BpuMI	CCSGG	1 cut(s)	848
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	162, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	679, 801, 1077
Bse1I	ACTGG	4 cut(s)	45, 211, 331, 977
Bse3DI	GCAATG	2 cut(s)	121, 388
BseDI	CCNNGG	2 cut(s)	162, 673
BseGI	GGATG	2 cut(s)	10, 39
BseLI	CCNNNNNNNGG	3 cut(s)	679, 801, 1077
BseMI	GCAATG	2 cut(s)	121, 388
BseMII	CTCAG	6 cut(s)	202, 258, 403, 765, 804, 876
BseNI	ACTGG	4 cut(s)	45, 211, 331, 977
BsePI	GCGCGC	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	5 cut(s)	280, 283, 360, 400, 803
BsgI	GTGCAG	1 cut(s)	797
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	1 cut(s)	1020
BsiHKAI	GWGCWC	2 cut(s)	189, 839
BsiSI	CCGG	1 cut(s)	847
BslFI	GGGAC	2 cut(s)	1054, 1093
BslI	CCNNNNNNNGG	3 cut(s)	679, 801, 1077
BsmFI	GGGAC	2 cut(s)	1054, 1093
BsnI	GGCC	1 cut(s)	1020
Bsp1286I	GDGCHC	3 cut(s)	189, 542, 839
Bsp143I	GATC	4 cut(s)	343, 610, 982, 1148
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	2 cut(s)	31, 805
BspANI	GGCC	1 cut(s)	1020
BspCNI	CTCAG	6 cut(s)	201, 259, 402, 764, 805, 875
BspFNI	CGCG	1 cut(s)	352
BspMAI	CTGCAG	1 cut(s)	1035
BspMI	ACCTGC	1 cut(s)	1024
BspPI	GGATC	3 cut(s)	338, 977, 1143
BspQI	GCTCTTC	2 cut(s)	162, 502
BsrDI	GCAATG	2 cut(s)	121, 388
BsrI	ACTGG	4 cut(s)	45, 211, 331, 977
BssECI	CCNNGG	2 cut(s)	162, 673
BssHII	GCGCGC	1 cut(s)	350
BssMI	GATC	4 cut(s)	343, 610, 982, 1148
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	673
Bst4CI	ACNGT	5 cut(s)	132, 251, 589, 834, 893
Bst6I	CTCTTC	2 cut(s)	162, 502
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	3 cut(s)	121, 352, 807
BstDEI	CTNAG	8 cut(s)	18, 188, 267, 389, 751, 813, 862, 1158
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	2 cut(s)	10, 39
BstFNI	CGCG	1 cut(s)	352
BstHHI	GCGC	3 cut(s)	335, 352, 354
BstKTI	GATC	4 cut(s)	346, 613, 985, 1151
BstMBI	GATC	4 cut(s)	343, 610, 982, 1148
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 236, 293, 356
BstNSI	RCATGY	3 cut(s)	95, 658, 731
BstSCI	CCNGG	1 cut(s)	846
BstSFI	CTRYAG	2 cut(s)	300, 1031
BstSLI	GKGCMC	1 cut(s)	839
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	5 cut(s)	280, 283, 360, 400, 803
BstX2I	RGATCY	2 cut(s)	343, 1148
BstYI	RGATCY	2 cut(s)	343, 1148
BsuRI	GGCC	1 cut(s)	1020
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	10, 39
BtsI	GCAGTG	1 cut(s)	785
BtsIMutI	CAGTG	6 cut(s)	196, 247, 324, 585, 785, 837
BveI	ACCTGC	1 cut(s)	1024
Cac8I	GCNNGC	3 cut(s)	121, 352, 807
CaiI	CAGNNNCTG	1 cut(s)	146
CfoI	GCGC	3 cut(s)	335, 352, 354
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	128, 195
CviAII	CATG	5 cut(s)	92, 308, 655, 674, 728
CviQI	GTAC	2 cut(s)	128, 195
DdeI	CTNAG	8 cut(s)	18, 188, 267, 389, 751, 813, 862, 1158
DpnI	GATC	4 cut(s)	345, 612, 984, 1150
DpnII	GATC	4 cut(s)	343, 610, 982, 1148
EaeI	YGGCCR	1 cut(s)	1018
Eam1104I	CTCTTC	2 cut(s)	162, 502
EarI	CTCTTC	2 cut(s)	162, 502
EciI	GGCGGA	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	673
Eco24I	GRGCYC	2 cut(s)	189, 542
Eco32I	GATATC	1 cut(s)	868
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	868
EcoT14I	CCWWGG	1 cut(s)	673
EcoT38I	GRGCYC	2 cut(s)	189, 542
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	5 cut(s)	95, 311, 658, 677, 731
FaqI	GGGAC	2 cut(s)	1054, 1093
FatI	CATG	5 cut(s)	91, 307, 654, 673, 727
FauI	CCCGC	1 cut(s)	798
Fnu4HI	GCNGC	5 cut(s)	294, 297, 374, 414, 792
FokI	GGATG	2 cut(s)	17, 46
FriOI	GRGCYC	2 cut(s)	189, 542
Fsp4HI	GCNGC	5 cut(s)	294, 297, 374, 414, 792
FspI	TGCGCA	1 cut(s)	334
GlaI	GCGC	3 cut(s)	334, 351, 353
GluI	GCNGC	5 cut(s)	294, 297, 374, 414, 792
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	1020
HapII	CCGG	1 cut(s)	847
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	3 cut(s)	335, 352, 354
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	5 cut(s)	95, 311, 658, 677, 731
Hin6I	GCGC	3 cut(s)	333, 350, 352
HinP1I	GCGC	3 cut(s)	333, 350, 352
HindIII	AAGCTT	2 cut(s)	702, 936
HinfI	GANTC	4 cut(s)	77, 143, 998, 1132
HpaII	CCGG	1 cut(s)	847
HphI	GGTGA	1 cut(s)	1048
Hpy166II	GTNNAC	1 cut(s)	837
Hpy188III	TCNNGA	7 cut(s)	25, 81, 438, 543, 710, 785, 1129
Hpy8I	GTNNAC	1 cut(s)	837
HpyAV	CCTTC	4 cut(s)	254, 403, 453, 571
HpyCH4III	ACNGT	5 cut(s)	132, 251, 589, 834, 893
HpyCH4IV	ACGT	1 cut(s)	769
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 236, 293, 356
HpyF3I	CTNAG	8 cut(s)	18, 188, 267, 389, 751, 813, 862, 1158
HpySE526I	ACGT	1 cut(s)	769
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	5 cut(s)	95, 311, 658, 677, 731
HspAI	GCGC	3 cut(s)	333, 350, 352
Kzo9I	GATC	4 cut(s)	343, 610, 982, 1148
LguI	GCTCTTC	2 cut(s)	162, 502
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	5 cut(s)	280, 283, 360, 400, 803
LweI	GCATC	2 cut(s)	475, 818
MaeII	ACGT	1 cut(s)	769
MaeIII	GTNAC	6 cut(s)	154, 310, 442, 553, 955, 964
MalI	GATC	4 cut(s)	345, 612, 984, 1150
MboI	GATC	4 cut(s)	343, 610, 982, 1148
MboII	GAAGA	2 cut(s)	179, 519
MflI	RGATCY	2 cut(s)	343, 1148
MhlI	GDGCHC	3 cut(s)	189, 542, 839
MlsI	TGGCCA	1 cut(s)	1020
MluCI	AATT	9 cut(s)	84, 180, 336, 515, 620, 915, 1002, 1045, 1139
MluNI	TGGCCA	1 cut(s)	1020
MlyI	GAGTC	1 cut(s)	1141
MmeI	TCCRAC	2 cut(s)	484, 832
Mox20I	TGGCCA	1 cut(s)	1020
MscI	TGGCCA	1 cut(s)	1020
MseI	TTAA	5 cut(s)	179, 339, 647, 1137, 1142
MslI	CAYNNNNRTG	4 cut(s)	252, 596, 732, 962
Msp20I	TGGCCA	1 cut(s)	1020
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	1 cut(s)	848
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	4 cut(s)	120, 236, 293, 356
NciI	CCSGG	1 cut(s)	848
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	4 cut(s)	343, 610, 982, 1148
NlaIII	CATG	5 cut(s)	95, 311, 658, 677, 731
NmeAIII	GCCGAG	1 cut(s)	784
NmuCI	GTSAC	5 cut(s)	154, 310, 553, 955, 964
NsbI	TGCGCA	1 cut(s)	334
NspI	RCATGY	3 cut(s)	95, 658, 731
OliI	CACNNNNGTG	1 cut(s)	962
PaqCI	CACCTGC	1 cut(s)	1024
PauI	GCGCGC	1 cut(s)	350
PciI	ACATGT	2 cut(s)	91, 727
PciSI	GCTCTTC	2 cut(s)	162, 502
PfeI	GAWTC	3 cut(s)	77, 143, 998
PflMI	CCANNNNNTGG	1 cut(s)	679
PkrI	GCNGC	5 cut(s)	295, 298, 375, 415, 793
PleI	GAGTC	1 cut(s)	1140
PpsI	GAGTC	1 cut(s)	1140
PscI	ACATGT	2 cut(s)	91, 727
PshBI	ATTAAT	1 cut(s)	1142
Psp124BI	GAGCTC	1 cut(s)	189
PsrI	GAACNNNNNNTAC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	1035
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	343, 1148
PteI	GCGCGC	1 cut(s)	350
RsaI	GTAC	2 cut(s)	129, 196
RsaNI	GTAC	2 cut(s)	128, 195
RseI	CAYNNNNRTG	4 cut(s)	252, 596, 732, 962
SacI	GAGCTC	1 cut(s)	189
SapI	GCTCTTC	2 cut(s)	162, 502
SaqAI	TTAA	5 cut(s)	179, 339, 647, 1137, 1142
SatI	GCNGC	5 cut(s)	294, 297, 374, 414, 792
Sau3AI	GATC	4 cut(s)	343, 610, 982, 1148
SchI	GAGTC	1 cut(s)	1141
ScrFI	CCNGG	1 cut(s)	848
SduI	GDGCHC	3 cut(s)	189, 542, 839
SfaNI	GCATC	2 cut(s)	475, 818
SfcI	CTRYAG	2 cut(s)	300, 1031
SmiMI	CAYNNNNRTG	4 cut(s)	252, 596, 732, 962
SmlI	CTYRAG	3 cut(s)	541, 549, 1074
SmoI	CTYRAG	3 cut(s)	541, 549, 1074
Sse9I	AATT	9 cut(s)	84, 180, 336, 515, 620, 915, 1002, 1045, 1139
SsiI	CCGC	2 cut(s)	31, 805
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	846
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	5 cut(s)	132, 251, 589, 834, 893
TaiI	ACGT	1 cut(s)	772
TaqI	TCGA	3 cut(s)	613, 724, 1120
TasI	AATT	9 cut(s)	84, 180, 336, 515, 620, 915, 1002, 1045, 1139
TfiI	GAWTC	3 cut(s)	77, 143, 998
Tru1I	TTAA	5 cut(s)	179, 339, 647, 1137, 1142
Tru9I	TTAA	5 cut(s)	179, 339, 647, 1137, 1142
TscAI	CASTG	6 cut(s)	196, 254, 331, 592, 785, 844
TseFI	GTSAC	5 cut(s)	154, 310, 553, 955, 964
TseI	GCWGC	5 cut(s)	293, 296, 373, 413, 791
Tsp45I	GTSAC	5 cut(s)	154, 310, 553, 955, 964
TspDTI	ATGAA	4 cut(s)	50, 296, 333, 510
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	6 cut(s)	196, 254, 331, 592, 785, 844
Van91I	CCANNNNNTGG	1 cut(s)	679
VneI	GTGCAC	1 cut(s)	835
VspI	ATTAAT	1 cut(s)	1142
XapI	RAATTY	2 cut(s)	84, 915
XceI	RCATGY	3 cut(s)	95, 658, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.