MD09G1008100.v1.1

ACT domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
559746 .. 563210
3465 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1008100.v1.1.491

Sequence Viewer

Length: 1332 bp
ATGGATGATGAGTACGCCAAGTTCGTCAGGAGGATGAACCCACCGAGAGTTGTGATCGATAACGATTATTGCGAGGATGCCACCGTTATCCAGGTTGACAGTGTCAACAAACATGGAATTCTGCTGGATGTTGTCCAAGTGCTCGCCGACGTGAACCTTGTAATAACCAAAGCTTATATCTCATCTGATGGTGTATGGTTCATGGATGTGTTTAATGTGATTGACCGTGAAGGGAAAAAAATCAGAGACAAGGACATTATCAATTATATTCAAATGAGACTTGAAAGCAATGGTGGCTTTGTACCCTCTATGAGAGATTCCGTTGGCATGATGCCCTCAGAAGAGTACACCTCCATTGAGCTCAGTGGTACCGACAGGCCTGGCTTATTGTCTGAAGTGTGTGCGGTTCTTGCAGACCTTCACTGTAATGTGGTAAATGCTGAGATATGGACACACAACGCTAGAGCTGCAGCTGTAGTTCATGTCACAGATGATTCCACTGGCTGCGCAATTGAAGATCCAATTCGTCTCGCTACAATTAAGGAGTTGCTTTGCAATGTCCTCAAAGTAAACAGTGAGTTGAAGGCTGCTAAAATGACACTTGCAACCCCTGGAGTTACAAACAGAGATAGAAGGTTGCATCAGATTATGTTTGCTGACAGGGATTATGAAAGGGTTGAAAGAGCAGAACTAAGGAGAGTTGAGGATAAGGGCTCAAAACCCCATGTAACCGCGTTGGATTGCAGCCAGAAGGATTACACTGTCATTACCATGAGGTCAAAAGATCGACCAAAGTTGTTATTTGACATCATCTGCACTTTAACAGACATGCAATATGTGGTTTTTCACGGAATGGTCAATACAGGGAGGACGGAAGCTTATCAGGAATTTTACATTCGACATGTTGATGGGCTTCCTATCAACTCAGAAGCTGAGCGAGAACGTGTTGTACAGTGCCTTGAAGCAGCCATTGAAAGGCGGGCATCTGAGGGCCTGGAGCTACAACTGTGCACAGATGACCGGGTCGGACTTCTCTCAGATATCACCCGGATATTCAGAGAGAACAGTTTGCGTGTCACACGAGCAGAAATTTCAACTAAAAGTGGAAAAGCAATAGACACATTCTATGTCACGGACGTTACAGGAAGCCCAGTAGACCCCAAGATTATCGATTCAGTTCGCAGACAGATTGGGCAGACCATACTGCAGGTGAAGTGTAACTCAAGCCCTGCACCAAAGCCTCCTCAAGGGACAACAATGGGATATCTCTTCGGAAACTTATTCAAAGCTCGAAGTTTCCAGCCCCTTAAGTTGGTTCGATCCTACTCTTAG

Protein Analysis

444

Amino Acids

49.9

Weight (kDa)

5.86

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT_ACR9_3rd PF24931 17 - 96 2.8e-07 ACR9-like, ACT-like domain
ACR10_N PF24914 25 - 81 2e-06 ACT domain-containing protein ACR10, N-terminal
ACT PF01842 28 - 77 9e-07 ACT domain
ACT PF01842 117 - 165 8.5e-10 ACT domain
ACT PF01842 339 - 395 2.6e-07 ACT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1198
Acc16I TGCGCA 1 cut(s) 508
Acc36I ACCTGC 1 cut(s) 1198
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 1155
AccII CGCG 1 cut(s) 734
AciI CCGC 3 cut(s) 404, 732, 979
AclWI GGATC 2 cut(s) 512, 1314
AcsI RAATTY 3 cut(s) 117, 887, 1089
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 5 cut(s) 14, 303, 347, 370, 951
AfiI CCNNNNNNNGG 3 cut(s) 975, 1247, 1312
AflII CTTAAG 1 cut(s) 1307
AflIII ACRYGT 2 cut(s) 901, 943
AgsI TTSAA 9 cut(s) 272, 284, 515, 583, 680, 962, 974, 1095, 1285
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 4 cut(s) 90, 379, 610, 993
AluBI AGCT 8 cut(s) 173, 361, 467, 473, 878, 932, 1000, 1289
AluI AGCT 8 cut(s) 173, 361, 467, 473, 878, 932, 1000, 1289
Alw21I GWGCWC 3 cut(s) 144, 363, 1013
Alw26I GTCTC 3 cut(s) 240, 271, 533
Alw44I GTGCAC 1 cut(s) 1009
AlwI GGATC 2 cut(s) 512, 1314
AlwNI CAGNNNCTG 1 cut(s) 932
AoxI GGCC 2 cut(s) 377, 991
ApaLI GTGCAC 1 cut(s) 1009
ApeKI GCWGC 6 cut(s) 467, 470, 504, 587, 744, 965
ApoI RAATTY 3 cut(s) 117, 887, 1089
Asp718I GGTACC 1 cut(s) 368
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 991
AsuC2I CCSGG 2 cut(s) 1022, 1048
AsuHPI GGTGA 2 cut(s) 1036, 1222
BaeGI GKGCMC 1 cut(s) 1013
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 363, 716
BauI CACGAG 1 cut(s) 1080
Bbv12I GWGCWC 3 cut(s) 144, 363, 1013
BbvI GCAGC 6 cut(s) 454, 482, 491, 574, 756, 977
BccI CCATC 2 cut(s) 182, 902
BciT130I CCWGG 4 cut(s) 92, 381, 612, 995
BcnI CCSGG 2 cut(s) 1022, 1048
BcoDI GTCTC 3 cut(s) 240, 271, 533
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 3 cut(s) 468, 474, 1205
BfrI CTTAAG 1 cut(s) 1307
BfuAI ACCTGC 1 cut(s) 1198
BisI GCNGC 6 cut(s) 468, 471, 505, 588, 745, 966
BlpI GCTNAGC 1 cut(s) 933
BlsI GCNGC 6 cut(s) 469, 472, 506, 589, 746, 967
Bme1390I CCNGG 6 cut(s) 92, 381, 612, 995, 1022, 1048
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 991
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 6 cut(s) 92, 381, 612, 995, 1022, 1048
BmrI ACTGGG 1 cut(s) 1145
BmsI GCATC 4 cut(s) 67, 321, 649, 992
BmuI ACTGGG 1 cut(s) 1145
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 2 cut(s) 633, 1016
Bpu1102I GCTNAGC 1 cut(s) 933
BpuEI CTTGAG 2 cut(s) 1207, 1230
BpuMI CCSGG 2 cut(s) 1022, 1048
Bsa29I ATCGAT 2 cut(s) 57, 1170
BsaJI CCNNGG 1 cut(s) 610
Bsc4I CCNNNNNNNGG 3 cut(s) 975, 1247, 1312
Bse1I ACTGG 2 cut(s) 505, 1151
Bse3DI GCAATG 2 cut(s) 295, 562
BseBI CCWGG 4 cut(s) 92, 381, 612, 995
BseCI ATCGAT 2 cut(s) 57, 1170
BseDI CCNNGG 1 cut(s) 610
BseGI GGATG 5 cut(s) 10, 39, 82, 133, 211
BseLI CCNNNNNNNGG 3 cut(s) 975, 1247, 1312
BseMI GCAATG 2 cut(s) 295, 562
BseMII CTCAG 7 cut(s) 351, 376, 432, 924, 939, 978, 1050
BseNI ACTGG 2 cut(s) 505, 1151
BseRI GAGGAG 1 cut(s) 1233
BseSI GKGCMC 1 cut(s) 1013
BseXI GCAGC 6 cut(s) 454, 482, 491, 574, 756, 977
BsgI GTGCAG 2 cut(s) 799, 1215
Bsh1236I CGCG 1 cut(s) 734
BshFI GGCC 2 cut(s) 379, 993
BshNI GGYRCC 1 cut(s) 368
BshVI ATCGAT 2 cut(s) 57, 1170
BsiHKAI GWGCWC 3 cut(s) 144, 363, 1013
BsiSI CCGG 2 cut(s) 1021, 1048
BslFI GGGAC 1 cut(s) 1264
BslI CCNNNNNNNGG 3 cut(s) 975, 1247, 1312
BsmAI GTCTC 3 cut(s) 240, 271, 533
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 1264
BsnI GGCC 2 cut(s) 379, 993
Bsp1286I GDGCHC 4 cut(s) 144, 363, 716, 1013
Bsp1407I TGTACA 1 cut(s) 949
Bsp143I GATC 4 cut(s) 54, 517, 784, 1319
Bsp1720I GCTNAGC 1 cut(s) 933
BspACI CCGC 3 cut(s) 404, 732, 979
BspANI GGCC 2 cut(s) 379, 993
BspCNI CTCAG 7 cut(s) 350, 375, 433, 925, 938, 979, 1049
BspDI ATCGAT 2 cut(s) 57, 1170
BspFNI CGCG 1 cut(s) 734
BspLI GGNNCC 1 cut(s) 370
BspMAI CTGCAG 2 cut(s) 472, 1209
BspMI ACCTGC 1 cut(s) 1198
BspPI GGATC 2 cut(s) 512, 1314
BspT107I GGYRCC 1 cut(s) 368
BspTI CTTAAG 1 cut(s) 1307
BsrDI GCAATG 2 cut(s) 295, 562
BsrGI TGTACA 1 cut(s) 949
BsrI ACTGG 2 cut(s) 505, 1151
BssECI CCNNGG 1 cut(s) 610
BssMI GATC 4 cut(s) 54, 517, 784, 1319
BssSI CACGAG 1 cut(s) 1080
Bst2BI CACGAG 1 cut(s) 1080
Bst2UI CCWGG 4 cut(s) 92, 381, 612, 995
Bst4CI ACNGT 9 cut(s) 85, 101, 227, 425, 575, 763, 954, 1008, 1067
Bst6I CTCTTC 2 cut(s) 336, 1274
BstAFI CTTAAG 1 cut(s) 1307
BstAUI TGTACA 1 cut(s) 949
BstC8I GCNNGC 2 cut(s) 144, 981
BstDEI CTNAG 9 cut(s) 337, 362, 441, 692, 925, 933, 987, 1036, 1329
BstENI CCTNNNNNAGG 1 cut(s) 1245
BstF5I GGATG 5 cut(s) 10, 39, 82, 133, 211
BstFNI CGCG 1 cut(s) 734
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 4 cut(s) 57, 520, 787, 1322
BstMAI GTCTC 3 cut(s) 240, 271, 533
BstMBI GATC 4 cut(s) 54, 517, 784, 1319
BstMWI GCNNNNNNNGC 3 cut(s) 294, 410, 467
BstNI CCWGG 4 cut(s) 92, 381, 612, 995
BstNSI RCATGY 2 cut(s) 832, 905
BstSCI CCNGG 6 cut(s) 90, 379, 610, 993, 1020, 1046
BstSFI CTRYAG 3 cut(s) 468, 474, 1205
BstSLI GKGCMC 1 cut(s) 1013
BstUI CGCG 1 cut(s) 734
BstV1I GCAGC 6 cut(s) 454, 482, 491, 574, 756, 977
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
Bsu15I ATCGAT 2 cut(s) 57, 1170
BsuRI GGCC 2 cut(s) 379, 993
BsuTUI ATCGAT 2 cut(s) 57, 1170
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 5 cut(s) 10, 39, 82, 133, 211
BtsIMutI CAGTG 7 cut(s) 106, 370, 421, 498, 580, 759, 959
BveI ACCTGC 1 cut(s) 1198
Cac8I GCNNGC 2 cut(s) 144, 981
CaiI CAGNNNCTG 1 cut(s) 932
CfoI GCGC 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 991
ClaI ATCGAT 2 cut(s) 57, 1170
Csp6I GTAC 5 cut(s) 13, 302, 346, 369, 950
CviAII CATG 8 cut(s) 113, 202, 328, 482, 725, 772, 829, 902
CviQI GTAC 5 cut(s) 13, 302, 346, 369, 950
DdeI CTNAG 9 cut(s) 337, 362, 441, 692, 925, 933, 987, 1036, 1329
DpnI GATC 4 cut(s) 56, 519, 786, 1321
DpnII GATC 4 cut(s) 54, 517, 784, 1319
Eam1104I CTCTTC 2 cut(s) 336, 1274
EarI CTCTTC 2 cut(s) 336, 1274
Ecl136II GAGCTC 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 379
Eco24I GRGCYC 2 cut(s) 363, 716
Eco32I GATATC 2 cut(s) 1042, 1265
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 361
EcoNI CCTNNNNNAGG 1 cut(s) 1245
EcoO109I RGGNCCY 1 cut(s) 991
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 4 cut(s) 90, 379, 610, 993
EcoRV GATATC 2 cut(s) 1042, 1265
EcoT38I GRGCYC 2 cut(s) 363, 716
Esp3I CGTCTC 1 cut(s) 533
FaeI CATG 8 cut(s) 116, 205, 331, 485, 728, 775, 832, 905
FaqI GGGAC 1 cut(s) 1264
FatI CATG 8 cut(s) 112, 201, 327, 481, 724, 771, 828, 901
FauI CCCGC 1 cut(s) 972
FblI GTMKAC 1 cut(s) 1155
Fnu4HI GCNGC 6 cut(s) 468, 471, 505, 588, 745, 966
FokI GGATG 5 cut(s) 17, 46, 89, 140, 218
FriOI GRGCYC 2 cut(s) 363, 716
Fsp4HI GCNGC 6 cut(s) 468, 471, 505, 588, 745, 966
FspBI CTAG 1 cut(s) 462
FspI TGCGCA 1 cut(s) 508
GlaI GCGC 1 cut(s) 508
GluI GCNGC 6 cut(s) 468, 471, 505, 588, 745, 966
GsuI CTGGAG 2 cut(s) 633, 1016
HaeIII GGCC 2 cut(s) 379, 993
HapII CCGG 2 cut(s) 1021, 1048
HhaI GCGC 1 cut(s) 509
Hin1II CATG 8 cut(s) 116, 205, 331, 485, 728, 775, 832, 905
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HincII GTYRAC 2 cut(s) 97, 106
HindII GTYRAC 2 cut(s) 97, 106
HindIII AAGCTT 2 cut(s) 171, 876
HinfI GANTC 3 cut(s) 317, 494, 1172
HpaII CCGG 2 cut(s) 1021, 1048
HphI GGTGA 2 cut(s) 1036, 1222
Hpy166II GTNNAC 7 cut(s) 97, 106, 154, 348, 571, 1011, 1156
Hpy188III TCNNGA 2 cut(s) 28, 884
Hpy8I GTNNAC 7 cut(s) 97, 106, 154, 348, 571, 1011, 1156
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 5 cut(s) 224, 428, 577, 627, 745
HpyCH4III ACNGT 9 cut(s) 85, 101, 227, 425, 575, 763, 954, 1008, 1067
HpyCH4IV ACGT 3 cut(s) 150, 943, 1137
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 410, 467
HpyF3I CTNAG 9 cut(s) 337, 362, 441, 692, 925, 933, 987, 1036, 1329
HpySE526I ACGT 3 cut(s) 150, 943, 1137
Hsp92II CATG 8 cut(s) 116, 205, 331, 485, 728, 775, 832, 905
HspAI GCGC 1 cut(s) 507
KpnI GGTACC 1 cut(s) 372
Kzo9I GATC 4 cut(s) 54, 517, 784, 1319
LmnI GCTCC 1 cut(s) 997
Lsp1109I GCAGC 6 cut(s) 454, 482, 491, 574, 756, 977
LweI GCATC 4 cut(s) 67, 321, 649, 992
MaeI CTAG 1 cut(s) 462
MaeII ACGT 3 cut(s) 150, 943, 1137
MaeIII GTNAC 7 cut(s) 484, 616, 727, 1075, 1129, 1138, 1217
MalI GATC 4 cut(s) 56, 519, 786, 1321
MboI GATC 4 cut(s) 54, 517, 784, 1319
MboII GAAGA 3 cut(s) 353, 527, 1261
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 4 cut(s) 144, 363, 716, 1013
MluCI AATT 7 cut(s) 117, 262, 510, 522, 537, 887, 1089
MmeI TCCRAC 2 cut(s) 717, 1006
MseI TTAA 4 cut(s) 213, 540, 821, 1308
MslI CAYNNNNRTG 4 cut(s) 206, 426, 770, 906
MspA1I CMGCKG 1 cut(s) 473
MspCI CTTAAG 1 cut(s) 1307
MspI CCGG 2 cut(s) 1021, 1048
MspR9I CCNGG 6 cut(s) 92, 381, 612, 995, 1022, 1048
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 4 cut(s) 92, 381, 612, 995
MvnI CGCG 1 cut(s) 734
MwoI GCNNNNNNNGC 3 cut(s) 294, 410, 467
NciI CCSGG 2 cut(s) 1022, 1048
NdeII GATC 4 cut(s) 54, 517, 784, 1319
NlaIII CATG 8 cut(s) 116, 205, 331, 485, 728, 775, 832, 905
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 3 cut(s) 484, 1075, 1129
NsbI TGCGCA 1 cut(s) 508
NspI RCATGY 2 cut(s) 832, 905
PaqCI CACCTGC 1 cut(s) 1198
PceI AGGCCT 1 cut(s) 379
PciI ACATGT 1 cut(s) 901
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 69
PfeI GAWTC 3 cut(s) 317, 494, 1172
PflFI GACNNNGTC 2 cut(s) 101, 1022
PkrI GCNGC 6 cut(s) 469, 472, 506, 589, 746, 967
PscI ACATGT 1 cut(s) 901
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 4 cut(s) 90, 379, 610, 993
PspGI CCWGG 4 cut(s) 90, 379, 610, 993
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 991
PsrI GAACNNNNNNTAC 3 cut(s) 37, 933, 965
PstI CTGCAG 2 cut(s) 472, 1209
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 1 cut(s) 517
PsyI GACNNNGTC 2 cut(s) 101, 1022
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 5 cut(s) 14, 303, 347, 370, 951
RsaNI GTAC 5 cut(s) 13, 302, 346, 369, 950
RseI CAYNNNNRTG 4 cut(s) 206, 426, 770, 906
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 4 cut(s) 213, 540, 821, 1308
SatI GCNGC 6 cut(s) 468, 471, 505, 588, 745, 966
Sau3AI GATC 4 cut(s) 54, 517, 784, 1319
Sau96I GGNCC 1 cut(s) 991
ScrFI CCNGG 6 cut(s) 92, 381, 612, 995, 1022, 1048
SduI GDGCHC 4 cut(s) 144, 363, 716, 1013
SfaNI GCATC 4 cut(s) 67, 321, 649, 992
SfcI CTRYAG 3 cut(s) 468, 474, 1205
SmiMI CAYNNNNRTG 4 cut(s) 206, 426, 770, 906
SmlI CTYRAG 3 cut(s) 1222, 1245, 1307
SmoI CTYRAG 3 cut(s) 1222, 1245, 1307
Sse9I AATT 7 cut(s) 117, 262, 510, 522, 537, 887, 1089
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 3 cut(s) 404, 732, 979
SspMI CTAG 1 cut(s) 462
SstI GAGCTC 1 cut(s) 363
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 6 cut(s) 90, 379, 610, 993, 1020, 1046
TaaI ACNGT 9 cut(s) 85, 101, 227, 425, 575, 763, 954, 1008, 1067
TaiI ACGT 3 cut(s) 153, 946, 1140
TaqI TCGA 6 cut(s) 57, 787, 898, 1170, 1291, 1318
TasI AATT 7 cut(s) 117, 262, 510, 522, 537, 887, 1089
TatI WGTACW 2 cut(s) 345, 949
TfiI GAWTC 3 cut(s) 317, 494, 1172
Tru1I TTAA 4 cut(s) 213, 540, 821, 1308
Tru9I TTAA 4 cut(s) 213, 540, 821, 1308
TscAI CASTG 7 cut(s) 106, 370, 428, 505, 580, 766, 959
TseFI GTSAC 3 cut(s) 484, 1075, 1129
TseI GCWGC 6 cut(s) 467, 470, 504, 587, 744, 965
Tsp45I GTSAC 3 cut(s) 484, 1075, 1129
TspDTI ATGAA 4 cut(s) 50, 190, 470, 684
TspGWI ACGGA 4 cut(s) 310, 864, 887, 1148
TspRI CASTG 7 cut(s) 106, 370, 428, 505, 580, 766, 959
Tth111I GACNNNGTC 2 cut(s) 101, 1022
Vha464I CTTAAG 1 cut(s) 1307
VneI GTGCAC 1 cut(s) 1009
XagI CCTNNNNNAGG 1 cut(s) 1245
XapI RAATTY 3 cut(s) 117, 887, 1089
XceI RCATGY 2 cut(s) 832, 905
XmiI GTMKAC 1 cut(s) 1155
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.