FvH4_6g53840

ACT domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
39406221 .. 39409260
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53840.t1

Sequence Viewer

Length: 1332 bp
ATGGATGATGAGTATACTAAGTTCGTGAGGCGGATGAACCCACCCAGAGTTGTGATTGACAATGATTCTTGTGAGGATGCTACTATTATCCAGGTTGACAGTGTCAACAAACATGGAAGTCTCCTAGATGTTGTCCAAGTGCTTGCAGATGTGAATCTTGTAATAACAAAAGCTTATATCTCATCTGATGGAGTATGGTTCATGGATGTGTTCAACGTGATTGACCGTGATGGGAAAAAGATCAGAGACAAGGACATTATCAATTATATACAAATTAGACTTGAAAGCAATGCCAGCTTTGTACCATCTACGGATTCTGTTGGTGTGACACCCTCAGAAGAGCATACCTTAATTGAGCTCAGTGGCACTGATAGAACTGGTCTATTATCTGAAGTGTGTGCCGTTCTTGCAGACCTTCACTGTAATGTGGTAAATGCTGAGATATGGACACACAATGCCAGAGCTGCAGCTGTAGTTCATGTCACAGATGATACCACTGGTTGTGCAATCAAAGATCCAAACCGCCTTGCTTCAATAAAGGAGCTGCTTTGCAATGTCCTTCGAGGAAACAATGAGTCGAAGGCTGCTAAAATGACACTTGCAACCTCTGGAGTTACAAATAGAGATAGAAGGCTGCACCAGATTATGTTTGCTGACAGAGATTATGAGAGGGTTGGAAGAGCTGAATTGCGCAGAGTGGAGGACAAGGGCTCAAGACCTCAAGTAACTGCCTTCGATTGCAGTCAGAAGTATTACACTGTCATTACTATGAAGGCAAAAGATCGACCAAAATTGTTGTTTGACATCATTTGCACTTTAACGGACATGCAGTATGTGGTATTCCATGGAATGGTAAATACAGGGATGACAGAAGCTTATCAGGAGTTCTATATTCGACATGTTGATGGAGTTCCTATAAGCTCAGAAGCTGAGCGAGAACGTGTTGTACAATGTCTTGAAGCAGCCATTGAAAGGCGGGCATCTGAGGGGCTTGAACTACAACTGTGCACCGATGACCGGGTTGGACTTCTATCAGATATCACTCGGATATTCAGAGAGAACAGTTTGTCTATCAAACGAGCAGAAATTTCAACTAAAGGAGGAAAAGCTCTGGACACCTTCTATGTCACAGACGTGACAGGAAACCCAGTTGATCCCAAGATGATTGATTCAATTCGCAGAGAGATTGGCCAGACCATACTGCAGGTGAAATGCAATTCAACCCCTCCACCATCAAAGTCCCCTGAAGGGACAAAAATGGGATATCTCTTTGGCAACTTGTTCAAAGCTCGAAATTTCCAAAATCTTAAATTAATCAGATCCTACTCTTAG

Protein Analysis

444

Amino Acids

49.72

Weight (kDa)

5.99

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT_ACR9_3rd PF24931 17 - 96 1.7e-06 ACR9-like, ACT-like domain
ACT PF01842 28 - 77 5e-06 ACT domain
ACT PF01842 117 - 164 1.9e-08 ACT domain
ACT PF01842 338 - 395 6.2e-09 ACT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1195
Acc16I TGCGCA 1 cut(s) 692
Acc36I ACCTGC 1 cut(s) 1195
AccB7I CCANNNNNTGG 1 cut(s) 850
AccI GTMKAC 1 cut(s) 14
AciI CCGC 3 cut(s) 31, 523, 976
AclWI GGATC 3 cut(s) 509, 1148, 1314
AcoI YGGCCR 1 cut(s) 1189
AcsI RAATTY 2 cut(s) 1086, 1294
AcuI CTGAAG 2 cut(s) 411, 1266
AfaI GTAC 2 cut(s) 303, 948
AfiI CCNNNNNNNGG 4 cut(s) 850, 972, 1017, 1248
AflIII ACRYGT 2 cut(s) 898, 940
AjiI CACGTC 1 cut(s) 1135
AjnI CCWGG 1 cut(s) 90
AleI CACNNNNGTG 1 cut(s) 1133
Alw21I GWGCWC 2 cut(s) 360, 1010
Alw26I GTCTC 2 cut(s) 125, 240
Alw44I GTGCAC 1 cut(s) 1006
AlwI GGATC 3 cut(s) 509, 1148, 1314
AlwNI CAGNNNCTG 1 cut(s) 929
AoxI GGCC 1 cut(s) 1189
ApaLI GTGCAC 1 cut(s) 1006
ApeKI GCWGC 6 cut(s) 464, 467, 544, 584, 634, 962
ApoI RAATTY 2 cut(s) 1086, 1294
AseI ATTAAT 1 cut(s) 1313
AspLEI GCGC 1 cut(s) 693
AsuC2I CCSGG 1 cut(s) 1019
AsuHPI GGTGA 1 cut(s) 1219
BaeGI GKGCMC 1 cut(s) 1010
BalI TGGCCA 1 cut(s) 1191
BanII GRGCYC 2 cut(s) 360, 713
Bbv12I GWGCWC 2 cut(s) 360, 1010
BbvI GCAGC 6 cut(s) 451, 479, 531, 571, 621, 974
BccI CCATC 5 cut(s) 182, 224, 313, 899, 1240
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 1 cut(s) 92
BcnI CCSGG 1 cut(s) 1019
BcoDI GTCTC 2 cut(s) 125, 240
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 3 cut(s) 465, 471, 1202
BfuAI ACCTGC 1 cut(s) 1195
BisI GCNGC 6 cut(s) 465, 468, 545, 585, 635, 963
BlpI GCTNAGC 1 cut(s) 930
BlsI GCNGC 6 cut(s) 466, 469, 546, 586, 636, 964
Bme1390I CCNGG 2 cut(s) 92, 1019
BmgBI CACGTC 1 cut(s) 1135
BmrFI CCNGG 2 cut(s) 92, 1019
BmrI ACTGGG 1 cut(s) 1142
BmsI GCATC 2 cut(s) 67, 989
BmuI ACTGGG 1 cut(s) 1142
BpmI CTGGAG 1 cut(s) 630
Bpu1102I GCTNAGC 1 cut(s) 930
BpuEI CTTGAG 2 cut(s) 697, 705
BpuMI CCSGG 1 cut(s) 1019
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 844
Bsc4I CCNNNNNNNGG 4 cut(s) 850, 972, 1017, 1248
Bse1I ACTGG 3 cut(s) 382, 502, 1148
Bse3DI GCAATG 2 cut(s) 295, 559
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 844
BseGI GGATG 5 cut(s) 10, 39, 82, 211, 870
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 4 cut(s) 850, 972, 1017, 1248
BseMI GCAATG 2 cut(s) 295, 559
BseMII CTCAG 6 cut(s) 348, 373, 429, 921, 936, 975
BseNI ACTGG 3 cut(s) 382, 502, 1148
BseSI GKGCMC 1 cut(s) 1010
BseXI GCAGC 6 cut(s) 451, 479, 531, 571, 621, 974
BsgI GTGCAG 1 cut(s) 620
BshFI GGCC 1 cut(s) 1191
BsiHKAI GWGCWC 2 cut(s) 360, 1010
BsiSI CCGG 1 cut(s) 1018
BslFI GGGAC 2 cut(s) 1225, 1264
BslI CCNNNNNNNGG 4 cut(s) 850, 972, 1017, 1248
BsmAI GTCTC 2 cut(s) 125, 240
BsmFI GGGAC 2 cut(s) 1225, 1264
BsnI GGCC 1 cut(s) 1191
Bsp1286I GDGCHC 3 cut(s) 360, 713, 1010
Bsp1407I TGTACA 1 cut(s) 946
Bsp143I GATC 5 cut(s) 240, 514, 781, 1153, 1319
Bsp1720I GCTNAGC 1 cut(s) 930
Bsp19I CCATGG 1 cut(s) 844
BspACI CCGC 3 cut(s) 31, 523, 976
BspANI GGCC 1 cut(s) 1191
BspCNI CTCAG 6 cut(s) 347, 372, 430, 922, 935, 976
BspMAI CTGCAG 2 cut(s) 469, 1206
BspMI ACCTGC 1 cut(s) 1195
BspPI GGATC 3 cut(s) 509, 1148, 1314
BspQI GCTCTTC 2 cut(s) 333, 673
BsrDI GCAATG 2 cut(s) 295, 559
BsrGI TGTACA 1 cut(s) 946
BsrI ACTGG 3 cut(s) 382, 502, 1148
BssECI CCNNGG 1 cut(s) 844
BssMI GATC 5 cut(s) 240, 514, 781, 1153, 1319
BssNAI GTATAC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 844
Bst1107I GTATAC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 6 cut(s) 101, 227, 422, 760, 1005, 1064
Bst6I CTCTTC 2 cut(s) 333, 673
BstAUI TGTACA 1 cut(s) 946
BstC8I GCNNGC 3 cut(s) 144, 295, 978
BstDEI CTNAG 8 cut(s) 18, 334, 359, 438, 922, 930, 984, 1329
BstDSI CCRYGG 1 cut(s) 844
BstF5I GGATG 5 cut(s) 10, 39, 82, 211, 870
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 5 cut(s) 243, 517, 784, 1156, 1322
BstMAI GTCTC 2 cut(s) 125, 240
BstMBI GATC 5 cut(s) 240, 514, 781, 1153, 1319
BstMWI GCNNNNNNNGC 3 cut(s) 294, 407, 464
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 2 cut(s) 829, 902
BstSCI CCNGG 2 cut(s) 90, 1017
BstSFI CTRYAG 3 cut(s) 465, 471, 1202
BstSLI GKGCMC 1 cut(s) 1010
BstV1I GCAGC 6 cut(s) 451, 479, 531, 571, 621, 974
BstX2I RGATCY 2 cut(s) 514, 1319
BstYI RGATCY 2 cut(s) 514, 1319
BstZ17I GTATAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 1191
BtgI CCRYGG 1 cut(s) 844
BtrI CACGTC 1 cut(s) 1135
BtsCI GGATG 5 cut(s) 10, 39, 82, 211, 870
BtsIMutI CAGTG 6 cut(s) 106, 366, 367, 418, 495, 756
BveI ACCTGC 1 cut(s) 1195
Cac8I GCNNGC 3 cut(s) 144, 295, 978
CaiI CAGNNNCTG 1 cut(s) 929
CfoI GCGC 1 cut(s) 693
Csp6I GTAC 2 cut(s) 302, 947
CviAII CATG 6 cut(s) 113, 202, 479, 826, 845, 899
CviQI GTAC 2 cut(s) 302, 947
DdeI CTNAG 8 cut(s) 18, 334, 359, 438, 922, 930, 984, 1329
DpnI GATC 5 cut(s) 242, 516, 783, 1155, 1321
DpnII GATC 5 cut(s) 240, 514, 781, 1153, 1319
EaeI YGGCCR 1 cut(s) 1189
Eam1104I CTCTTC 2 cut(s) 333, 673
EarI CTCTTC 2 cut(s) 333, 673
EciI GGCGGA 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 844
Eco24I GRGCYC 2 cut(s) 360, 713
Eco32I GATATC 2 cut(s) 1039, 1265
Eco53kI GAGCTC 1 cut(s) 358
Eco57I CTGAAG 2 cut(s) 411, 1266
EcoICRI GAGCTC 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 90
EcoRV GATATC 2 cut(s) 1039, 1265
EcoT14I CCWWGG 1 cut(s) 844
EcoT38I GRGCYC 2 cut(s) 360, 713
ErhI CCWWGG 1 cut(s) 844
FaeI CATG 6 cut(s) 116, 205, 482, 829, 848, 902
FaqI GGGAC 2 cut(s) 1225, 1264
FatI CATG 6 cut(s) 112, 201, 478, 825, 844, 898
FauI CCCGC 1 cut(s) 969
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 6 cut(s) 465, 468, 545, 585, 635, 963
FokI GGATG 5 cut(s) 17, 46, 89, 218, 877
FriOI GRGCYC 2 cut(s) 360, 713
Fsp4HI GCNGC 6 cut(s) 465, 468, 545, 585, 635, 963
FspBI CTAG 1 cut(s) 125
FspI TGCGCA 1 cut(s) 692
GlaI GCGC 1 cut(s) 692
GluI GCNGC 6 cut(s) 465, 468, 545, 585, 635, 963
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 1 cut(s) 1191
HapII CCGG 1 cut(s) 1018
HhaI GCGC 1 cut(s) 693
Hin1II CATG 6 cut(s) 116, 205, 482, 829, 848, 902
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HincII GTYRAC 2 cut(s) 97, 106
HindII GTYRAC 2 cut(s) 97, 106
HindIII AAGCTT 2 cut(s) 171, 873
HinfI GANTC 5 cut(s) 65, 154, 314, 575, 1169
HpaII CCGG 1 cut(s) 1018
HphI GGTGA 1 cut(s) 1219
Hpy166II GTNNAC 4 cut(s) 15, 97, 106, 1008
Hpy188III TCNNGA 6 cut(s) 25, 609, 714, 881, 956, 1112
Hpy8I GTNNAC 4 cut(s) 15, 97, 106, 1008
HpyAV CCTTC 8 cut(s) 425, 569, 574, 624, 742, 766, 1129, 1241
HpyCH4III ACNGT 6 cut(s) 101, 227, 422, 760, 1005, 1064
HpyCH4IV ACGT 3 cut(s) 216, 940, 1134
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 407, 464
HpyF3I CTNAG 8 cut(s) 18, 334, 359, 438, 922, 930, 984, 1329
HpySE526I ACGT 3 cut(s) 216, 940, 1134
Hsp92II CATG 6 cut(s) 116, 205, 482, 829, 848, 902
HspAI GCGC 1 cut(s) 691
Kzo9I GATC 5 cut(s) 240, 514, 781, 1153, 1319
LguI GCTCTTC 2 cut(s) 333, 673
LmnI GCTCC 1 cut(s) 541
Lsp1109I GCAGC 6 cut(s) 451, 479, 531, 571, 621, 974
LweI GCATC 2 cut(s) 67, 989
MaeI CTAG 1 cut(s) 125
MaeII ACGT 3 cut(s) 216, 940, 1134
MaeIII GTNAC 6 cut(s) 325, 481, 613, 724, 1126, 1135
MalI GATC 5 cut(s) 242, 516, 783, 1155, 1321
MboI GATC 5 cut(s) 240, 514, 781, 1153, 1319
MboII GAAGA 2 cut(s) 350, 690
MflI RGATCY 2 cut(s) 514, 1319
MhlI GDGCHC 3 cut(s) 360, 713, 1010
MlsI TGGCCA 1 cut(s) 1191
MluNI TGGCCA 1 cut(s) 1191
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 2 cut(s) 655, 1003
Mox20I TGGCCA 1 cut(s) 1191
MscI TGGCCA 1 cut(s) 1191
MseI TTAA 4 cut(s) 350, 818, 1308, 1313
MslI CAYNNNNRTG 5 cut(s) 206, 423, 767, 903, 1133
Msp20I TGGCCA 1 cut(s) 1191
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 1 cut(s) 1018
MspR9I CCNGG 2 cut(s) 92, 1019
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 294, 407, 464
NciI CCSGG 1 cut(s) 1019
NcoI CCATGG 1 cut(s) 844
NdeII GATC 5 cut(s) 240, 514, 781, 1153, 1319
NlaIII CATG 6 cut(s) 116, 205, 482, 829, 848, 902
NmuCI GTSAC 4 cut(s) 325, 481, 1126, 1135
NsbI TGCGCA 1 cut(s) 692
NspI RCATGY 2 cut(s) 829, 902
OliI CACNNNNGTG 1 cut(s) 1133
PaqCI CACCTGC 1 cut(s) 1195
PciI ACATGT 1 cut(s) 898
PciSI GCTCTTC 2 cut(s) 333, 673
PfeI GAWTC 4 cut(s) 65, 154, 314, 1169
PflFI GACNNNGTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 850
PkrI GCNGC 6 cut(s) 466, 469, 546, 586, 636, 964
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PscI ACATGT 1 cut(s) 898
PshBI ATTAAT 1 cut(s) 1313
Psp124BI GAGCTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PsrI GAACNNNNNNTAC 3 cut(s) 37, 930, 962
PstI CTGCAG 2 cut(s) 469, 1206
PstNI CAGNNNCTG 1 cut(s) 929
PsuI RGATCY 2 cut(s) 514, 1319
PsyI GACNNNGTC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 2 cut(s) 303, 948
RsaNI GTAC 2 cut(s) 302, 947
RseI CAYNNNNRTG 5 cut(s) 206, 423, 767, 903, 1133
SacI GAGCTC 1 cut(s) 360
SapI GCTCTTC 2 cut(s) 333, 673
SaqAI TTAA 4 cut(s) 350, 818, 1308, 1313
SatI GCNGC 6 cut(s) 465, 468, 545, 585, 635, 963
Sau3AI GATC 5 cut(s) 240, 514, 781, 1153, 1319
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 2 cut(s) 92, 1019
SduI GDGCHC 3 cut(s) 360, 713, 1010
SfaNI GCATC 2 cut(s) 67, 989
SfcI CTRYAG 3 cut(s) 465, 471, 1202
SmiMI CAYNNNNRTG 5 cut(s) 206, 423, 767, 903, 1133
SmlI CTYRAG 2 cut(s) 712, 720
SmoI CTYRAG 2 cut(s) 712, 720
SsiI CCGC 3 cut(s) 31, 523, 976
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 2 cut(s) 90, 1017
StyI CCWWGG 1 cut(s) 844
TaaI ACNGT 6 cut(s) 101, 227, 422, 760, 1005, 1064
TaiI ACGT 3 cut(s) 219, 943, 1137
TaqI TCGA 6 cut(s) 562, 578, 735, 784, 895, 1291
TatI WGTACW 1 cut(s) 946
TfiI GAWTC 4 cut(s) 65, 154, 314, 1169
Tru1I TTAA 4 cut(s) 350, 818, 1308, 1313
Tru9I TTAA 4 cut(s) 350, 818, 1308, 1313
TscAI CASTG 6 cut(s) 106, 367, 373, 425, 502, 763
TseFI GTSAC 4 cut(s) 325, 481, 1126, 1135
TseI GCWGC 6 cut(s) 464, 467, 544, 584, 634, 962
Tsp45I GTSAC 4 cut(s) 325, 481, 1126, 1135
TspDTI ATGAA 4 cut(s) 50, 190, 467, 785
TspGWI ACGGA 2 cut(s) 326, 836
TspRI CASTG 6 cut(s) 106, 367, 373, 425, 502, 763
Tth111I GACNNNGTC 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 850
VneI GTGCAC 1 cut(s) 1006
VspI ATTAAT 1 cut(s) 1313
XapI RAATTY 2 cut(s) 1086, 1294
XceI RCATGY 2 cut(s) 829, 902
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.