MD17G1002600.v1.1

ACT domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
193413 .. 196558
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1002600.v1.1.491

Sequence Viewer

Length: 1353 bp
ATGTGGGAGAAAAGAGAAAAAATGGATGATGAGTATGCCAAGTTCGTCAGGAGGATGAACCCACCCAGAGTTGTGATTGATAACGATTCTTGCGAGGATGCCACCGTTATACAGGTTGACAGTGTCAACAAACATGGAATTCTTCTGGATGTAGTCCAAGTGCTCACCGACGTTAACCTTACAATAACAAAAGCATATATCTCATCTGATGGTGTATGGTTCATGGATGTGTTTAATGTGATTGACCGTGACGGGAAGAAGATCAGAGACAAGGACATTATCAATTGTATCCAAATGAGACTTGAAAGCAATGCCGGCTTTGTACCTTCTATGAGAGATTCCGTTGGTGTGATGCCCTCAGAAGAGCACACCTCCATTGAGCTGAGTGGTACTGACAGGCCAGGTTTATTGTCTGAAGTGTGTGCAGTTCTTGCAGACCTTCACTGTAATGTGGTAAATGCTGAGATATGGACACACAACACTAGAGCTGCAGCTGTAGTTCATGTCACAGATGATTCCACTGGCTGCGCAATTGAAGATCCAATCCGTCTCGTTGCAATCAAGGATTTGCTTTGCAATGTCCTCAAAGGAAACAACGAGTTGAAGCCCGCTAAAATGACACTTGCAACCCCTGGAGTTACAAATAGAGACAGAAGGTTGCATCAGATTATGTTTGCTGACAGGGATTATGAAAGGGTTGAAAGAGCAGAACTACGGAGAGTTGAGGATAAGGGCTCAAAACCCCATGTAACCGCGTTGGATTGTAGCCAGAAGGATTACACAGTCATTACCATGAGGTCAAAAGATCGACCAAAACTGTTATTTGACATCATCTGCACTTTAACAGATATGCAGTACGTTGTTTTTCACGGCATGGTCAATACAGGAAGGATGGAAGCTTATCAGGAATTTTACATTCGACATGTTGATGGGCTTCCTATAAACTCAGAAGCTGAGCGAGAACGTGTTGTACAGTGTCTTGAAGCAGCCATTGAAAGGAGGGCATCTGAGGGCCTGGAACTACAACTCTGCACAGATGACCGGGTTGGACTTCTCTCGGATATCACCCGGATATTCAGGGAGAACAGTTTGTGTATCAAACGAGCTGAAATTTCAACTAAAAATGGAAAAGCGATGGACACATTCTATGTCACTGATGTTACAGGAAGCCCAGTAGACCCCAAGATCATCGATTCAATCCGCAGACAGATTGGGCAGACCATACTGCAGGTGAAATGTAACCCAAGCCCTGCACCAAAGCCTCCTCAAGGGACAAAGATGGGATATCTCTTCGGGAACTTATTTAAAGCTCCAAGTTTCCAGAGTTTTAAGTTGGTTAGATCCTACTCTTAA

Protein Analysis

451

Amino Acids

50.83

Weight (kDa)

6.06

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT_ACR9_3rd PF24931 24 - 103 4.3e-08 ACR9-like, ACT-like domain
ACR10_N PF24914 30 - 88 2e-06 ACT domain-containing protein ACR10, N-terminal
ACT PF01842 35 - 84 1.5e-06 ACT domain
ACT PF01842 124 - 172 1e-09 ACT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1219
Acc16I TGCGCA 1 cut(s) 529
Acc36I ACCTGC 1 cut(s) 1219
AccI GTMKAC 1 cut(s) 1176
AccII CGCG 1 cut(s) 755
AciI CCGC 3 cut(s) 609, 753, 1201
AclWI GGATC 2 cut(s) 533, 1335
AcsI RAATTY 3 cut(s) 138, 908, 1110
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 4 cut(s) 324, 391, 857, 972
AfiI CCNNNNNNNGG 2 cut(s) 996, 1268
AflIII ACRYGT 2 cut(s) 922, 964
AgsI TTSAA 8 cut(s) 305, 536, 604, 701, 983, 995, 1116, 1197
AjnI CCWGG 3 cut(s) 400, 631, 1014
AluBI AGCT 7 cut(s) 382, 488, 494, 899, 953, 1106, 1310
AluI AGCT 7 cut(s) 382, 488, 494, 899, 953, 1106, 1310
Alw21I GWGCWC 2 cut(s) 165, 369
Alw26I GTCTC 4 cut(s) 261, 292, 554, 642
AlwI GGATC 2 cut(s) 533, 1335
AlwNI CAGNNNCTG 1 cut(s) 953
AoxI GGCC 2 cut(s) 398, 1012
ApeKI GCWGC 4 cut(s) 488, 491, 525, 986
ApoI RAATTY 3 cut(s) 138, 908, 1110
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 1012
AsuC2I CCSGG 2 cut(s) 1043, 1069
AsuHPI GGTGA 3 cut(s) 157, 1057, 1243
BanII GRGCYC 1 cut(s) 737
Bbv12I GWGCWC 2 cut(s) 165, 369
BbvI GCAGC 4 cut(s) 475, 503, 512, 998
BccI CCATC 5 cut(s) 203, 886, 923, 1129, 1273
BceAI ACGGC 1 cut(s) 886
BciT130I CCWGG 3 cut(s) 402, 633, 1016
BciVI GTATCC 1 cut(s) 299
BcnI CCSGG 2 cut(s) 1043, 1069
BcoDI GTCTC 4 cut(s) 261, 292, 554, 642
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 3 cut(s) 489, 495, 1226
BfuAI ACCTGC 1 cut(s) 1219
BfuI GTATCC 1 cut(s) 299
BisI GCNGC 4 cut(s) 489, 492, 526, 987
BlpI GCTNAGC 1 cut(s) 954
BlsI GCNGC 4 cut(s) 490, 493, 527, 988
Bme1390I CCNGG 5 cut(s) 402, 633, 1016, 1043, 1069
BmgT120I GGNCC 1 cut(s) 1012
BmrFI CCNGG 5 cut(s) 402, 633, 1016, 1043, 1069
BmrI ACTGGG 1 cut(s) 1166
BmsI GCATC 4 cut(s) 88, 342, 670, 1013
BmuI ACTGGG 1 cut(s) 1166
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 654
Bpu1102I GCTNAGC 1 cut(s) 954
BpuEI CTTGAG 1 cut(s) 1251
BpuMI CCSGG 2 cut(s) 1043, 1069
Bsa29I ATCGAT 1 cut(s) 1191
BsaJI CCNNGG 1 cut(s) 631
Bsc4I CCNNNNNNNGG 2 cut(s) 996, 1268
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 526, 1172
Bse3DI GCAATG 2 cut(s) 316, 583
BseBI CCWGG 3 cut(s) 402, 633, 1016
BseCI ATCGAT 1 cut(s) 1191
BseDI CCNNGG 1 cut(s) 631
BseGI GGATG 6 cut(s) 31, 60, 103, 154, 232, 897
BseLI CCNNNNNNNGG 2 cut(s) 996, 1268
BseMI GCAATG 2 cut(s) 316, 583
BseMII CTCAG 6 cut(s) 372, 374, 453, 945, 960, 999
BseNI ACTGG 2 cut(s) 526, 1172
BseRI GAGGAG 1 cut(s) 1254
BseXI GCAGC 4 cut(s) 475, 503, 512, 998
BsgI GTGCAG 4 cut(s) 444, 820, 1015, 1236
Bsh1236I CGCG 1 cut(s) 755
BshFI GGCC 2 cut(s) 400, 1014
BshVI ATCGAT 1 cut(s) 1191
BsiHKAI GWGCWC 2 cut(s) 165, 369
BsiSI CCGG 3 cut(s) 315, 1042, 1069
BslFI GGGAC 1 cut(s) 1285
BslI CCNNNNNNNGG 2 cut(s) 996, 1268
BsmAI GTCTC 4 cut(s) 261, 292, 554, 642
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 1285
BsnI GGCC 2 cut(s) 400, 1014
Bsp1286I GDGCHC 3 cut(s) 165, 369, 737
Bsp1407I TGTACA 1 cut(s) 970
Bsp143I GATC 5 cut(s) 261, 538, 805, 1185, 1340
Bsp1720I GCTNAGC 1 cut(s) 954
BspACI CCGC 3 cut(s) 609, 753, 1201
BspANI GGCC 2 cut(s) 400, 1014
BspCNI CTCAG 6 cut(s) 371, 375, 454, 946, 959, 1000
BspDI ATCGAT 1 cut(s) 1191
BspFNI CGCG 1 cut(s) 755
BspMAI CTGCAG 2 cut(s) 493, 1230
BspMI ACCTGC 1 cut(s) 1219
BspPI GGATC 2 cut(s) 533, 1335
BspQI GCTCTTC 1 cut(s) 357
BsrDI GCAATG 2 cut(s) 316, 583
BsrFI RCCGGY 1 cut(s) 314
BsrGI TGTACA 1 cut(s) 970
BsrI ACTGG 2 cut(s) 526, 1172
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 631
BssMI GATC 5 cut(s) 261, 538, 805, 1185, 1340
Bst2UI CCWGG 3 cut(s) 402, 633, 1016
Bst4CI ACNGT 8 cut(s) 106, 122, 248, 446, 784, 819, 975, 1088
Bst6I CTCTTC 2 cut(s) 357, 1295
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 970
BstC8I GCNNGC 2 cut(s) 316, 609
BstDEI CTNAG 6 cut(s) 358, 383, 462, 946, 954, 1008
BstENI CCTNNNNNAGG 1 cut(s) 1266
BstF5I GGATG 6 cut(s) 31, 60, 103, 154, 232, 897
BstFNI CGCG 1 cut(s) 755
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 5 cut(s) 264, 541, 808, 1188, 1343
BstMAI GTCTC 4 cut(s) 261, 292, 554, 642
BstMBI GATC 5 cut(s) 261, 538, 805, 1185, 1340
BstMWI GCNNNNNNNGC 2 cut(s) 315, 431
BstNI CCWGG 3 cut(s) 402, 633, 1016
BstNSI RCATGY 1 cut(s) 926
BstSCI CCNGG 5 cut(s) 400, 631, 1014, 1041, 1067
BstSFI CTRYAG 3 cut(s) 489, 495, 1226
BstUI CGCG 1 cut(s) 755
BstV1I GCAGC 4 cut(s) 475, 503, 512, 998
BstX2I RGATCY 2 cut(s) 538, 1340
BstYI RGATCY 2 cut(s) 538, 1340
Bsu15I ATCGAT 1 cut(s) 1191
BsuI GTATCC 1 cut(s) 299
BsuRI GGCC 2 cut(s) 400, 1014
BsuTUI ATCGAT 1 cut(s) 1191
BtgZI GCGATG 1 cut(s) 1148
BtsCI GGATG 6 cut(s) 31, 60, 103, 154, 232, 897
BtsIMutI CAGTG 5 cut(s) 127, 442, 519, 980, 1152
BveI ACCTGC 1 cut(s) 1219
Cac8I GCNNGC 2 cut(s) 316, 609
CaiI CAGNNNCTG 1 cut(s) 953
CfoI GCGC 1 cut(s) 530
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 1012
ClaI ATCGAT 1 cut(s) 1191
Csp6I GTAC 4 cut(s) 323, 390, 856, 971
CviAII CATG 7 cut(s) 134, 223, 503, 746, 793, 874, 923
CviQI GTAC 4 cut(s) 323, 390, 856, 971
DdeI CTNAG 6 cut(s) 358, 383, 462, 946, 954, 1008
DpnI GATC 5 cut(s) 263, 540, 807, 1187, 1342
DpnII GATC 5 cut(s) 261, 538, 805, 1185, 1340
DraI TTTAAA 1 cut(s) 1306
Eam1104I CTCTTC 2 cut(s) 357, 1295
EarI CTCTTC 2 cut(s) 357, 1295
Eco24I GRGCYC 1 cut(s) 737
Eco32I GATATC 2 cut(s) 1063, 1286
Eco57I CTGAAG 1 cut(s) 435
EcoNI CCTNNNNNAGG 1 cut(s) 1266
EcoO109I RGGNCCY 1 cut(s) 1012
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 400, 631, 1014
EcoRV GATATC 2 cut(s) 1063, 1286
EcoT38I GRGCYC 1 cut(s) 737
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 7 cut(s) 137, 226, 506, 749, 796, 877, 926
FaqI GGGAC 1 cut(s) 1285
FatI CATG 7 cut(s) 133, 222, 502, 745, 792, 873, 922
FauI CCCGC 1 cut(s) 616
FblI GTMKAC 1 cut(s) 1176
Fnu4HI GCNGC 4 cut(s) 489, 492, 526, 987
FokI GGATG 6 cut(s) 38, 67, 110, 161, 239, 904
FriOI GRGCYC 1 cut(s) 737
Fsp4HI GCNGC 4 cut(s) 489, 492, 526, 987
FspBI CTAG 1 cut(s) 483
FspI TGCGCA 1 cut(s) 529
GlaI GCGC 1 cut(s) 529
GluI GCNGC 4 cut(s) 489, 492, 526, 987
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 2 cut(s) 400, 1014
HapII CCGG 3 cut(s) 315, 1042, 1069
HhaI GCGC 1 cut(s) 530
Hin1II CATG 7 cut(s) 137, 226, 506, 749, 796, 877, 926
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HincII GTYRAC 3 cut(s) 118, 127, 175
HindII GTYRAC 3 cut(s) 118, 127, 175
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 4 cut(s) 86, 338, 515, 1193
HpaI GTTAAC 1 cut(s) 175
HpaII CCGG 3 cut(s) 315, 1042, 1069
HphI GGTGA 3 cut(s) 157, 1057, 1243
Hpy166II GTNNAC 4 cut(s) 118, 127, 175, 1177
Hpy188I TCNGA 8 cut(s) 208, 266, 361, 415, 666, 949, 1009, 1060
Hpy188III TCNNGA 6 cut(s) 49, 146, 905, 980, 1294, 1321
Hpy8I GTNNAC 4 cut(s) 118, 127, 175, 1177
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 5 cut(s) 336, 449, 648, 766, 882
HpyCH4III ACNGT 8 cut(s) 106, 122, 248, 446, 784, 819, 975, 1088
HpyCH4IV ACGT 3 cut(s) 171, 858, 964
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 431
HpyF3I CTNAG 6 cut(s) 358, 383, 462, 946, 954, 1008
HpySE526I ACGT 3 cut(s) 171, 858, 964
Hsp92II CATG 7 cut(s) 137, 226, 506, 749, 796, 877, 926
HspAI GCGC 1 cut(s) 528
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 5 cut(s) 261, 538, 805, 1185, 1340
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 1 cut(s) 1315
Lsp1109I GCAGC 4 cut(s) 475, 503, 512, 998
LweI GCATC 4 cut(s) 88, 342, 670, 1013
MaeI CTAG 1 cut(s) 483
MaeII ACGT 3 cut(s) 171, 858, 964
MaeIII GTNAC 7 cut(s) 248, 505, 637, 748, 1150, 1159, 1238
MalI GATC 5 cut(s) 263, 540, 807, 1187, 1342
MboI GATC 5 cut(s) 261, 538, 805, 1185, 1340
MboII GAAGA 6 cut(s) 134, 268, 271, 374, 548, 1282
MfeI CAATTG 2 cut(s) 283, 531
MflI RGATCY 2 cut(s) 538, 1340
MhlI GDGCHC 3 cut(s) 165, 369, 737
MluCI AATT 5 cut(s) 138, 283, 531, 908, 1110
MmeI TCCRAC 2 cut(s) 738, 1027
MroNI GCCGGC 1 cut(s) 314
MseI TTAA 6 cut(s) 174, 234, 842, 1305, 1329, 1351
MslI CAYNNNNRTG 4 cut(s) 227, 447, 791, 927
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 3 cut(s) 315, 1042, 1069
MspR9I CCNGG 5 cut(s) 402, 633, 1016, 1043, 1069
MunI CAATTG 2 cut(s) 283, 531
MvaI CCWGG 3 cut(s) 402, 633, 1016
MvnI CGCG 1 cut(s) 755
MwoI GCNNNNNNNGC 2 cut(s) 315, 431
NaeI GCCGGC 1 cut(s) 316
NciI CCSGG 2 cut(s) 1043, 1069
NdeII GATC 5 cut(s) 261, 538, 805, 1185, 1340
NgoMIV GCCGGC 1 cut(s) 314
NlaIII CATG 7 cut(s) 137, 226, 506, 749, 796, 877, 926
NmuCI GTSAC 3 cut(s) 248, 505, 1150
NsbI TGCGCA 1 cut(s) 529
NspI RCATGY 1 cut(s) 926
PaqCI CACCTGC 1 cut(s) 1219
PciI ACATGT 1 cut(s) 922
PciSI GCTCTTC 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdiI GCCGGC 1 cut(s) 316
PfeI GAWTC 4 cut(s) 86, 338, 515, 1193
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 4 cut(s) 490, 493, 527, 988
PscI ACATGT 1 cut(s) 922
Psp6I CCWGG 3 cut(s) 400, 631, 1014
PspGI CCWGG 3 cut(s) 400, 631, 1014
PspPI GGNCC 1 cut(s) 1012
PsrI GAACNNNNNNTAC 4 cut(s) 26, 58, 954, 986
PstI CTGCAG 2 cut(s) 493, 1230
PstNI CAGNNNCTG 1 cut(s) 953
PsuI RGATCY 2 cut(s) 538, 1340
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 4 cut(s) 324, 391, 857, 972
RsaNI GTAC 4 cut(s) 323, 390, 856, 971
RseI CAYNNNNRTG 4 cut(s) 227, 447, 791, 927
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 6 cut(s) 174, 234, 842, 1305, 1329, 1351
SatI GCNGC 4 cut(s) 489, 492, 526, 987
Sau3AI GATC 5 cut(s) 261, 538, 805, 1185, 1340
Sau96I GGNCC 1 cut(s) 1012
ScrFI CCNGG 5 cut(s) 402, 633, 1016, 1043, 1069
SduI GDGCHC 3 cut(s) 165, 369, 737
SfaNI GCATC 4 cut(s) 88, 342, 670, 1013
SfcI CTRYAG 3 cut(s) 489, 495, 1226
SmiMI CAYNNNNRTG 4 cut(s) 227, 447, 791, 927
SmlI CTYRAG 1 cut(s) 1266
SmoI CTYRAG 1 cut(s) 1266
Sse9I AATT 5 cut(s) 138, 283, 531, 908, 1110
SsiI CCGC 3 cut(s) 609, 753, 1201
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 5 cut(s) 400, 631, 1014, 1041, 1067
TaaI ACNGT 8 cut(s) 106, 122, 248, 446, 784, 819, 975, 1088
TaiI ACGT 3 cut(s) 174, 861, 967
TaqI TCGA 3 cut(s) 808, 919, 1191
TasI AATT 5 cut(s) 138, 283, 531, 908, 1110
TatI WGTACW 1 cut(s) 970
TfiI GAWTC 4 cut(s) 86, 338, 515, 1193
Tru1I TTAA 6 cut(s) 174, 234, 842, 1305, 1329, 1351
Tru9I TTAA 6 cut(s) 174, 234, 842, 1305, 1329, 1351
TscAI CASTG 5 cut(s) 127, 449, 526, 980, 1159
TseFI GTSAC 3 cut(s) 248, 505, 1150
TseI GCWGC 4 cut(s) 488, 491, 525, 986
Tsp45I GTSAC 3 cut(s) 248, 505, 1150
TspDTI ATGAA 4 cut(s) 71, 211, 491, 705
TspGWI ACGGA 3 cut(s) 331, 536, 730
TspRI CASTG 5 cut(s) 127, 449, 526, 980, 1159
Tth111I GACNNNGTC 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 1266
XapI RAATTY 3 cut(s) 138, 908, 1110
XceI RCATGY 1 cut(s) 926
XmiI GTMKAC 1 cut(s) 1176
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.