Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003523

Physical Location & Seq

Genomic Coordinates Reverse (-)

71118414 .. 71122650

Gene Structure 4237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0589100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGACTCAATGCTCTCTCAGCTTGCTCAAGCAGTAGAAAGAACTTCAAAGCCAGAATTGTTCTGTTTTCGGTTTTCAGGAGTTGGGATCCTATCAGTTCCTTATGCACTGGCAACTGGAGGGTGGTCAAGCTTAGCACTTCTGTTTTTGTTCGCTGCTGCAGCCTTTTACTCGGGCTTGTTAATCAAGAGATGTATGGATATGGATTCTAGCATAAGAACTTATCCTGAAATAGGCGAACGCGCATTTGGGAAGAAGGGAAAAATATTGATGTCAATTTTCATGAACTTAGAACTCTACTTAGTCGCAACAGGTTTCCTGATTTTGGAAGGAGATAACTTACATAACATGTTTCCAACCATTGGATTTGAAGTGGAGGGTTTTAAAATTGGTGGGAAAGAATGCTTCATAGTGATTGCTGCCCTCATTGTTCTGCCAACTGTTTGGTTAGACAACTTGAGCCTTCTTTCCTATGTATCTGCTAGTGGGGTTTTGGCTTCTGCTATCATTCTGGGATCAATTTTGTGGACTGGTGCTTTTGACGGAGTTGGATTTCATCAGAAGGGGTCACCGATTAAGTGGAGTGGAATCCCTACTGCTGTCAGCTTATACGCCTTTTGTTATTGTGCTCATCCTGTGTTCCCTACCCTGTACACTTCTATGAAAAACAAAAAACAGTTCTCCAATGTTCTCCTTGTCTGCTTTATATTATGCACCATCTGTTATGCATCAATGGCAGTTTTTGGGTACTTAATGTTCGGGTCAACAGTTCAATCGCAGATTACTCTAAACCTCCCGACTACCAAAATTAGCTCACAAGTCGCAATATACACCACCCTGGTCAATCCAATATCCAAATTTGCTTTGATGGTTACACCAATAATGAATGCTGCAAAAAGATGGTTTCCTGGTTACCAGAATAAAGGATTCTTTAACATATTAGTCAGTACCACCCTGGTAATCAGCTGTGTTATAGTAGCTTTGGCTGTACCCTTTTTCGCATATCTCATGGCACTTGTTGGAGCGTTTTTGAGTGTCACAGCTTCAATTATAATGCCATGCTTTTGCTACCTTAAGATTTCTGGCACTTATCGAAAAATTGGATGTGAGATGTTGATCATATGGGGTATAATACTACTAGGTGCTGCAGTAGTCATTTTTGGTACTTACACATCTCTGGTAGAAATAATAGGGCATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009653 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

400

Amino Acids

43.61

Weight (kDa)

8.83

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	25 - 392	9.3e-57	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990
fragaria_vesca	FvH4_6g53840
malus_domestica	MD09G1008100.v1.1 MD17G1002600.v1.1
prunus_persica	Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1
pyrus_communis	pycom111g00650 pycom17g00680
rosa_chinensis	RchiOBHm_Chr2g0175981
rosa_laevigata	RLG00000022370
rosa_multiflora	Rmu_co8433007.1_g000001 Rmu_sc0012513.1_g000007 Rmu_sc0018801.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076890
rosa_rugosa	Rorug02G0589100 Rorug02G0589100
rosa_samantha	Rh2AG668300 Rh2BG679800 Rh2CG642700 Rh2DG693500
rosa_wichuraiana	Rw2G054790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1052
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccII	CGCG	1 cut(s)	243
AclWI	GGATC	3 cut(s)	82, 95, 523
AcsI	RAATTY	1 cut(s)	857
AfaI	GTAC	5 cut(s)	653, 749, 949, 990, 1165
AfiI	CCNNNNNNNGG	3 cut(s)	233, 325, 362
AflII	CTTAAG	1 cut(s)	1073
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	4 cut(s)	48, 371, 773, 1047
AjnI	CCWGG	3 cut(s)	837, 907, 954
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	7 cut(s)	22, 132, 606, 813, 966, 980, 1043
AluI	AGCT	7 cut(s)	22, 132, 606, 813, 966, 980, 1043
Alw21I	GWGCWC	1 cut(s)	631
AlwI	GGATC	3 cut(s)	82, 95, 523
Ama87I	CYCGRG	1 cut(s)	172
ApeKI	GCWGC	6 cut(s)	155, 158, 161, 419, 890, 1145
ApoI	RAATTY	1 cut(s)	857
AspLEI	GCGC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	561
AvaI	CYCGRG	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	6 cut(s)	142, 145, 173, 406, 877, 1132
BccI	CCATC	3 cut(s)	725, 862, 894
BciT130I	CCWGG	3 cut(s)	839, 909, 956
BclI	TGATCA	1 cut(s)	1116
BfaI	CTAG	3 cut(s)	210, 483, 1139
BfmI	CTRYAG	3 cut(s)	159, 1146, 1199
BfrI	CTTAAG	1 cut(s)	1073
BisI	GCNGC	6 cut(s)	156, 159, 162, 420, 891, 1146
BlpI	GCTNAGC	1 cut(s)	133
BlsI	GCNGC	6 cut(s)	157, 160, 163, 421, 892, 1147
Bme1390I	CCNGG	3 cut(s)	839, 909, 956
BmeT110I	CYCGRG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	3 cut(s)	839, 909, 956
BmsI	GCATC	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	133
BpuEI	CTTGAG	2 cut(s)	12, 478
BsaBI	GATNNNNATC	1 cut(s)	1115
BsaJI	CCNNGG	2 cut(s)	837, 954
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 325, 362
Bse1I	ACTGG	3 cut(s)	114, 121, 535
Bse8I	GATNNNNATC	1 cut(s)	1115
BseBI	CCWGG	3 cut(s)	839, 909, 956
BseDI	CCNNGG	2 cut(s)	837, 954
BseGI	GGATG	2 cut(s)	631, 1109
BseJI	GATNNNNATC	1 cut(s)	1115
BseLI	CCNNNNNNNGG	3 cut(s)	233, 325, 362
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	3 cut(s)	114, 121, 535
BseXI	GCAGC	6 cut(s)	142, 145, 173, 406, 877, 1132
Bsh1236I	CGCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	172
BslI	CCNNNNNNNGG	3 cut(s)	233, 325, 362
BsmI	GAATGC	2 cut(s)	407, 892
BsoBI	CYCGRG	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	3 cut(s)	87, 515, 1116
Bsp1720I	GCTNAGC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	89
BspMAI	CTGCAG	2 cut(s)	163, 1150
BspPI	GGATC	3 cut(s)	82, 95, 523
BspTI	CTTAAG	1 cut(s)	1073
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	3 cut(s)	114, 121, 535
BssECI	CCNNGG	2 cut(s)	837, 954
BssMI	GATC	3 cut(s)	87, 515, 1116
Bst2UI	CCWGG	3 cut(s)	839, 909, 956
Bst4CI	ACNGT	3 cut(s)	442, 678, 769
BstAFI	CTTAAG	1 cut(s)	1073
BstAUI	TGTACA	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	4 cut(s)	18, 133, 289, 301
BstEII	GGTNACC	2 cut(s)	567, 911
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	631, 1109
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	3 cut(s)	90, 518, 1119
BstMBI	GATC	3 cut(s)	87, 515, 1116
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 161, 734
BstNI	CCWGG	3 cut(s)	839, 909, 956
BstNSI	RCATGY	1 cut(s)	352
BstPI	GGTNACC	2 cut(s)	567, 911
BstSCI	CCNGG	3 cut(s)	837, 907, 954
BstSFI	CTRYAG	3 cut(s)	159, 1146, 1199
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	6 cut(s)	142, 145, 173, 406, 877, 1132
BstX2I	RGATCY	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	631, 1109
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	245
Csp6I	GTAC	5 cut(s)	652, 748, 948, 989, 1164
CviAII	CATG	4 cut(s)	283, 349, 1009, 1059
CviQI	GTAC	5 cut(s)	652, 748, 948, 989, 1164
DdeI	CTNAG	4 cut(s)	18, 133, 289, 301
DpnI	GATC	3 cut(s)	89, 517, 1118
DpnII	GATC	3 cut(s)	87, 515, 1116
DraI	TTTAAA	1 cut(s)	385
Eco88I	CYCGRG	1 cut(s)	172
Eco91I	GGTNACC	2 cut(s)	567, 911
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoO65I	GGTNACC	2 cut(s)	567, 911
EcoRII	CCWGG	3 cut(s)	837, 907, 954
EcoT22I	ATGCAT	1 cut(s)	730
FaeI	CATG	4 cut(s)	286, 352, 1012, 1062
FatI	CATG	4 cut(s)	282, 348, 1008, 1058
FauNDI	CATATG	1 cut(s)	1121
FbaI	TGATCA	1 cut(s)	1116
Fnu4HI	GCNGC	6 cut(s)	156, 159, 162, 420, 891, 1146
FokI	GGATG	2 cut(s)	618, 1116
Fsp4HI	GCNGC	6 cut(s)	156, 159, 162, 420, 891, 1146
FspBI	CTAG	3 cut(s)	210, 483, 1139
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	6 cut(s)	156, 159, 162, 420, 891, 1146
GsuI	CTGGAG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	4 cut(s)	286, 352, 1012, 1062
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	4 cut(s)	5, 206, 588, 927
HphI	GGTGA	1 cut(s)	561
Hpy166II	GTNNAC	3 cut(s)	528, 654, 765
Hpy188I	TCNGA	1 cut(s)	561
Hpy188III	TCNNGA	6 cut(s)	78, 187, 227, 283, 319, 796
Hpy8I	GTNNAC	3 cut(s)	528, 654, 765
HpyAV	CCTTC	4 cut(s)	250, 323, 473, 556
HpyCH4III	ACNGT	3 cut(s)	442, 678, 769
HpyCH4V	TGCA	6 cut(s)	107, 161, 714, 728, 893, 1148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 161, 734
HpyF3I	CTNAG	4 cut(s)	18, 133, 289, 301
Hsp92II	CATG	4 cut(s)	286, 352, 1012, 1062
HspAI	GCGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	1116
Kzo9I	GATC	3 cut(s)	87, 515, 1116
LmnI	GCTCC	1 cut(s)	1022
Lsp1109I	GCAGC	6 cut(s)	142, 145, 173, 406, 877, 1132
LweI	GCATC	1 cut(s)	737
MaeI	CTAG	3 cut(s)	210, 483, 1139
MaeIII	GTNAC	4 cut(s)	567, 871, 911, 1036
MalI	GATC	3 cut(s)	89, 517, 1118
MboI	GATC	3 cut(s)	87, 515, 1116
MboII	GAAGA	1 cut(s)	265
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	8 cut(s)	56, 276, 387, 519, 807, 857, 1047, 1098
MmeI	TCCRAC	3 cut(s)	380, 529, 1000
MnlI	CCTC	4 cut(s)	113, 370, 434, 803
Mph1103I	ATGCAT	1 cut(s)	730
MseI	TTAA	6 cut(s)	182, 384, 576, 752, 933, 1074
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	1 cut(s)	966
MspCI	CTTAAG	1 cut(s)	1073
MspR9I	CCNGG	3 cut(s)	839, 909, 956
Mva1269I	GAATGC	2 cut(s)	407, 892
MvaI	CCWGG	3 cut(s)	839, 909, 956
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	19, 161, 734
NdeI	CATATG	1 cut(s)	1121
NdeII	GATC	3 cut(s)	87, 515, 1116
NlaIII	CATG	4 cut(s)	286, 352, 1012, 1062
NlaIV	GGNNCC	1 cut(s)	89
NmuCI	GTSAC	2 cut(s)	567, 1036
NsiI	ATGCAT	1 cut(s)	730
NspI	RCATGY	1 cut(s)	352
PagI	TCATGA	1 cut(s)	282
PciI	ACATGT	1 cut(s)	348
PctI	GAATGC	2 cut(s)	407, 892
PfeI	GAWTC	3 cut(s)	206, 588, 927
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	6 cut(s)	157, 160, 163, 421, 892, 1147
PscI	ACATGT	1 cut(s)	348
PsiI	TTATAA	1 cut(s)	1052
Psp6I	CCWGG	3 cut(s)	837, 907, 954
PspEI	GGTNACC	2 cut(s)	567, 911
PspGI	CCWGG	3 cut(s)	837, 907, 954
PspN4I	GGNNCC	1 cut(s)	89
PsrI	GAACNNNNNNTAC	2 cut(s)	740, 772
PstI	CTGCAG	2 cut(s)	163, 1150
PsuI	RGATCY	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	966
RsaI	GTAC	5 cut(s)	653, 749, 949, 990, 1165
RsaNI	GTAC	5 cut(s)	652, 748, 948, 989, 1164
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	6 cut(s)	182, 384, 576, 752, 933, 1074
SatI	GCNGC	6 cut(s)	156, 159, 162, 420, 891, 1146
Sau3AI	GATC	3 cut(s)	87, 515, 1116
ScrFI	CCNGG	3 cut(s)	839, 909, 956
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	1 cut(s)	737
SfcI	CTRYAG	3 cut(s)	159, 1146, 1199
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	3 cut(s)	27, 457, 1073
SmoI	CTYRAG	3 cut(s)	27, 457, 1073
Sse9I	AATT	8 cut(s)	56, 276, 387, 519, 807, 857, 1047, 1098
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	3 cut(s)	210, 483, 1139
StyD4I	CCNGG	3 cut(s)	837, 907, 954
TaaI	ACNGT	3 cut(s)	442, 678, 769
TaqI	TCGA	1 cut(s)	1093
TasI	AATT	8 cut(s)	56, 276, 387, 519, 807, 857, 1047, 1098
TatI	WGTACW	1 cut(s)	651
TfiI	GAWTC	3 cut(s)	206, 588, 927
Tru1I	TTAA	6 cut(s)	182, 384, 576, 752, 933, 1074
Tru9I	TTAA	6 cut(s)	182, 384, 576, 752, 933, 1074
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	2 cut(s)	567, 1036
TseI	GCWGC	6 cut(s)	155, 158, 161, 419, 890, 1145
Tsp45I	GTSAC	2 cut(s)	567, 1036
TspDTI	ATGAA	6 cut(s)	271, 299, 397, 545, 677, 899
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	114
Van91I	CCANNNNNTGG	1 cut(s)	362
Vha464I	CTTAAG	1 cut(s)	1073
XagI	CCTNNNNNAGG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	857
XceI	RCATGY	1 cut(s)	352
XspI	CTAG	3 cut(s)	210, 483, 1139
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.