Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8433007.1

Orthogroup ID

OG0003523

Physical Location & Seq

Genomic Coordinates Reverse (-)

16 .. 1389

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8433007.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgttgcagagacttgaaagcaatgccagctttgtaccgtctatgacagattctgttggtgtgacgccctccgaagagcataccttaattgagctcagtggtactgatagaactggtctattgtctgaagtgtgtgctgttcttgcagaccttcactgtaatgtggtaaatgctgagatatggacacacaatgccagagctgctgctgtagttcatgtcacagatgaaaccactggttgcgcaattaaagatccagcgcgcctcgcttcaataaaggagctgctttgcaatgtcctcagaggaaacaatgagttgaaggctgccaaaatgacacttgcaacctctggagttacaaatagagatagaaggttgcatcagattatgtttgccgacagagattatgaaagggttggaagagctgaattacgcagagttgaggataagggctcaagacctcaagtaactgcctttgattgcagtcagaaggattacactgtcattactatgaaggcaaaagatcgaccaaaattgttgtttgacatcatttgcactttaacggacatgcaatatgtggtattccatggaatggtcaatacagggaggacagaagcttatcaggagttttatattcgacatgttgatggagttcctataagctcagaagccgaacgagaacgtgtcgtgcagtgtcttgaagcagccattgaaaggcgggcatctgaggggcttgaactacaactgtgcactgatgaccgggttggacttctctcagatatcactcggatattcagggagaacagtttgtctatcaaacgagcagaaatttcaactaaaggtggaaaagctttggacactttctatgtcacagatgtgacaggaaacccagttgatcccaagatgattgattcaattcgcagagagattggccagaccatactgcaggtgaaatgcaattcaacccctccaccaccaaagtcccctcaagggacaacaatgggatttctctttgggaacttgttcaaagctcgaagtttccagagtcttaaattaatcagatcctactcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

355

Amino Acids

39.56

Weight (kDa)

7.04

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990
fragaria_vesca	FvH4_6g53840
malus_domestica	MD09G1008100.v1.1 MD17G1002600.v1.1
prunus_persica	Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1
pyrus_communis	pycom111g00650 pycom17g00680
rosa_chinensis	RchiOBHm_Chr2g0175981
rosa_laevigata	RLG00000022370
rosa_multiflora	Rmu_co8433007.1_g000001 Rmu_sc0012513.1_g000007 Rmu_sc0018801.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076890
rosa_rugosa	Rorug02G0589100 Rorug02G0589100
rosa_samantha	Rh2AG668300 Rh2BG679800 Rh2CG642700 Rh2DG693500
rosa_wichuraiana	Rw2G054790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	931
Acc16I	TGCGCA	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	931
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccII	CGCG	1 cut(s)	259
AciI	CCGC	1 cut(s)	712
AclWI	GGATC	3 cut(s)	245, 884, 1050
AcoI	YGGCCR	1 cut(s)	925
AcsI	RAATTY	1 cut(s)	822
AcuI	CTGAAG	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	2 cut(s)	36, 103
AfiI	CCNNNNNNNGG	3 cut(s)	586, 708, 984
AflIII	ACRYGT	2 cut(s)	634, 676
AleI	CACNNNNGTG	1 cut(s)	869
AluBI	AGCT	9 cut(s)	30, 94, 200, 280, 419, 611, 657, 845, 1025
AluI	AGCT	9 cut(s)	30, 94, 200, 280, 419, 611, 657, 845, 1025
Alw21I	GWGCWC	2 cut(s)	96, 746
Alw26I	GTCTC	1 cut(s)	4
Alw44I	GTGCAC	1 cut(s)	742
AlwI	GGATC	3 cut(s)	245, 884, 1050
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	925
ApaLI	GTGCAC	1 cut(s)	742
ApeKI	GCWGC	5 cut(s)	200, 203, 280, 320, 698
ApoI	RAATTY	1 cut(s)	822
AseI	ATTAAT	1 cut(s)	1049
Asp700I	GAANNNNTTC	1 cut(s)	1016
AspLEI	GCGC	3 cut(s)	242, 259, 261
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	1 cut(s)	955
BaeGI	GKGCMC	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	927
BanII	GRGCYC	2 cut(s)	96, 449
Bbv12I	GWGCWC	2 cut(s)	96, 746
BbvI	GCAGC	5 cut(s)	187, 190, 267, 307, 710
BccI	CCATC	1 cut(s)	635
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	1 cut(s)	4
BfmI	CTRYAG	2 cut(s)	207, 938
BfuAI	ACCTGC	1 cut(s)	931
BisI	GCNGC	5 cut(s)	201, 204, 281, 321, 699
BlsI	GCNGC	5 cut(s)	202, 205, 282, 322, 700
Bme1390I	CCNGG	1 cut(s)	755
BmrFI	CCNGG	1 cut(s)	755
BmrI	ACTGGG	1 cut(s)	878
BmsI	GCATC	2 cut(s)	382, 725
BmuI	ACTGGG	1 cut(s)	878
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	3 cut(s)	433, 441, 966
BpuMI	CCSGG	1 cut(s)	755
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	3 cut(s)	586, 708, 984
Bse1I	ACTGG	3 cut(s)	118, 238, 884
Bse3DI	GCAATG	2 cut(s)	28, 295
BseDI	CCNNGG	1 cut(s)	580
BseLI	CCNNNNNNNGG	3 cut(s)	586, 708, 984
BseMI	GCAATG	2 cut(s)	28, 295
BseMII	CTCAG	6 cut(s)	109, 165, 310, 672, 711, 783
BseNI	ACTGG	3 cut(s)	118, 238, 884
BsePI	GCGCGC	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	746
BseXI	GCAGC	5 cut(s)	187, 190, 267, 307, 710
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	927
BsiHKAI	GWGCWC	2 cut(s)	96, 746
BsiSI	CCGG	1 cut(s)	754
BslFI	GGGAC	2 cut(s)	961, 1000
BslI	CCNNNNNNNGG	3 cut(s)	586, 708, 984
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	2 cut(s)	961, 1000
BsnI	GGCC	1 cut(s)	927
Bsp1286I	GDGCHC	3 cut(s)	96, 449, 746
Bsp143I	GATC	4 cut(s)	250, 517, 889, 1055
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	1 cut(s)	712
BspANI	GGCC	1 cut(s)	927
BspCNI	CTCAG	6 cut(s)	108, 166, 309, 671, 712, 782
BspFNI	CGCG	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	942
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	3 cut(s)	245, 884, 1050
BspQI	GCTCTTC	2 cut(s)	69, 409
BsrDI	GCAATG	2 cut(s)	28, 295
BsrI	ACTGG	3 cut(s)	118, 238, 884
BssECI	CCNNGG	1 cut(s)	580
BssHII	GCGCGC	1 cut(s)	257
BssMI	GATC	4 cut(s)	250, 517, 889, 1055
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	580
Bst4CI	ACNGT	5 cut(s)	39, 158, 496, 741, 800
Bst6I	CTCTTC	2 cut(s)	69, 409
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	28, 259, 714
BstDEI	CTNAG	7 cut(s)	95, 174, 296, 658, 720, 769, 1065
BstDSI	CCRYGG	1 cut(s)	580
BstFNI	CGCG	1 cut(s)	259
BstHHI	GCGC	3 cut(s)	242, 259, 261
BstKTI	GATC	4 cut(s)	253, 520, 892, 1058
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	4 cut(s)	250, 517, 889, 1055
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 143, 200, 263
BstNSI	RCATGY	2 cut(s)	565, 638
BstSCI	CCNGG	1 cut(s)	753
BstSFI	CTRYAG	2 cut(s)	207, 938
BstSLI	GKGCMC	1 cut(s)	746
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	5 cut(s)	187, 190, 267, 307, 710
BstX2I	RGATCY	2 cut(s)	250, 1055
BstYI	RGATCY	2 cut(s)	250, 1055
BsuRI	GGCC	1 cut(s)	927
BtgI	CCRYGG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	6 cut(s)	103, 154, 231, 492, 692, 744
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	3 cut(s)	28, 259, 714
CaiI	CAGNNNCTG	1 cut(s)	53
CfoI	GCGC	3 cut(s)	242, 259, 261
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	35, 102
CviAII	CATG	4 cut(s)	215, 562, 581, 635
CviQI	GTAC	2 cut(s)	35, 102
DdeI	CTNAG	7 cut(s)	95, 174, 296, 658, 720, 769, 1065
DpnI	GATC	4 cut(s)	252, 519, 891, 1057
DpnII	GATC	4 cut(s)	250, 517, 889, 1055
EaeI	YGGCCR	1 cut(s)	925
Eam1104I	CTCTTC	2 cut(s)	69, 409
EarI	CTCTTC	2 cut(s)	69, 409
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	580
Eco24I	GRGCYC	2 cut(s)	96, 449
Eco32I	GATATC	1 cut(s)	775
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	775
EcoT14I	CCWWGG	1 cut(s)	580
EcoT38I	GRGCYC	2 cut(s)	96, 449
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	4 cut(s)	218, 565, 584, 638
FaqI	GGGAC	2 cut(s)	961, 1000
FatI	CATG	4 cut(s)	214, 561, 580, 634
FauI	CCCGC	1 cut(s)	705
Fnu4HI	GCNGC	5 cut(s)	201, 204, 281, 321, 699
FriOI	GRGCYC	2 cut(s)	96, 449
Fsp4HI	GCNGC	5 cut(s)	201, 204, 281, 321, 699
FspI	TGCGCA	1 cut(s)	241
GlaI	GCGC	3 cut(s)	241, 258, 260
GluI	GCNGC	5 cut(s)	201, 204, 281, 321, 699
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	927
HapII	CCGG	1 cut(s)	754
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	3 cut(s)	242, 259, 261
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	4 cut(s)	218, 565, 584, 638
Hin6I	GCGC	3 cut(s)	240, 257, 259
HinP1I	GCGC	3 cut(s)	240, 257, 259
HindIII	AAGCTT	2 cut(s)	609, 843
HinfI	GANTC	3 cut(s)	50, 905, 1039
HpaII	CCGG	1 cut(s)	754
HphI	GGTGA	1 cut(s)	955
Hpy166II	GTNNAC	1 cut(s)	744
Hpy188III	TCNNGA	5 cut(s)	345, 450, 617, 692, 1036
Hpy8I	GTNNAC	1 cut(s)	744
HpyAV	CCTTC	5 cut(s)	161, 310, 360, 478, 502
HpyCH4III	ACNGT	5 cut(s)	39, 158, 496, 741, 800
HpyCH4IV	ACGT	1 cut(s)	676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 143, 200, 263
HpyF3I	CTNAG	7 cut(s)	95, 174, 296, 658, 720, 769, 1065
HpySE526I	ACGT	1 cut(s)	676
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	4 cut(s)	218, 565, 584, 638
HspAI	GCGC	3 cut(s)	240, 257, 259
Kzo9I	GATC	4 cut(s)	250, 517, 889, 1055
LguI	GCTCTTC	2 cut(s)	69, 409
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	5 cut(s)	187, 190, 267, 307, 710
LweI	GCATC	2 cut(s)	382, 725
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	6 cut(s)	61, 217, 349, 460, 862, 871
MalI	GATC	4 cut(s)	252, 519, 891, 1057
MboI	GATC	4 cut(s)	250, 517, 889, 1055
MboII	GAAGA	2 cut(s)	86, 426
MflI	RGATCY	2 cut(s)	250, 1055
MhlI	GDGCHC	3 cut(s)	96, 449, 746
MlsI	TGGCCA	1 cut(s)	927
MluCI	AATT	8 cut(s)	87, 243, 422, 527, 822, 909, 952, 1046
MluNI	TGGCCA	1 cut(s)	927
MlyI	GAGTC	1 cut(s)	1048
MmeI	TCCRAC	2 cut(s)	391, 739
Mox20I	TGGCCA	1 cut(s)	927
MroXI	GAANNNNTTC	1 cut(s)	1016
MscI	TGGCCA	1 cut(s)	927
MseI	TTAA	5 cut(s)	86, 246, 554, 1044, 1049
MslI	CAYNNNNRTG	4 cut(s)	159, 503, 639, 869
Msp20I	TGGCCA	1 cut(s)	927
MspI	CCGG	1 cut(s)	754
MspR9I	CCNGG	1 cut(s)	755
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	4 cut(s)	27, 143, 200, 263
NciI	CCSGG	1 cut(s)	755
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	4 cut(s)	250, 517, 889, 1055
NlaIII	CATG	4 cut(s)	218, 565, 584, 638
NmuCI	GTSAC	4 cut(s)	61, 217, 862, 871
NsbI	TGCGCA	1 cut(s)	241
NspI	RCATGY	2 cut(s)	565, 638
OliI	CACNNNNGTG	1 cut(s)	869
PaqCI	CACCTGC	1 cut(s)	931
PauI	GCGCGC	1 cut(s)	257
PciI	ACATGT	1 cut(s)	634
PciSI	GCTCTTC	2 cut(s)	69, 409
PdmI	GAANNNNTTC	1 cut(s)	1016
PfeI	GAWTC	2 cut(s)	50, 905
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	5 cut(s)	202, 205, 282, 322, 700
PleI	GAGTC	1 cut(s)	1047
PpsI	GAGTC	1 cut(s)	1047
PscI	ACATGT	1 cut(s)	634
PshBI	ATTAAT	1 cut(s)	1049
Psp124BI	GAGCTC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	942
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	250, 1055
PteI	GCGCGC	1 cut(s)	257
RsaI	GTAC	2 cut(s)	36, 103
RsaNI	GTAC	2 cut(s)	35, 102
RseI	CAYNNNNRTG	4 cut(s)	159, 503, 639, 869
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	2 cut(s)	69, 409
SaqAI	TTAA	5 cut(s)	86, 246, 554, 1044, 1049
SatI	GCNGC	5 cut(s)	201, 204, 281, 321, 699
Sau3AI	GATC	4 cut(s)	250, 517, 889, 1055
SchI	GAGTC	1 cut(s)	1048
ScrFI	CCNGG	1 cut(s)	755
SduI	GDGCHC	3 cut(s)	96, 449, 746
SfaNI	GCATC	2 cut(s)	382, 725
SfcI	CTRYAG	2 cut(s)	207, 938
SmiMI	CAYNNNNRTG	4 cut(s)	159, 503, 639, 869
SmlI	CTYRAG	3 cut(s)	448, 456, 981
SmoI	CTYRAG	3 cut(s)	448, 456, 981
Sse9I	AATT	8 cut(s)	87, 243, 422, 527, 822, 909, 952, 1046
SsiI	CCGC	1 cut(s)	712
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	753
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	5 cut(s)	39, 158, 496, 741, 800
TaiI	ACGT	1 cut(s)	679
TaqI	TCGA	3 cut(s)	520, 631, 1027
TasI	AATT	8 cut(s)	87, 243, 422, 527, 822, 909, 952, 1046
TfiI	GAWTC	2 cut(s)	50, 905
Tru1I	TTAA	5 cut(s)	86, 246, 554, 1044, 1049
Tru9I	TTAA	5 cut(s)	86, 246, 554, 1044, 1049
TscAI	CASTG	6 cut(s)	103, 161, 238, 499, 692, 751
TseFI	GTSAC	4 cut(s)	61, 217, 862, 871
TseI	GCWGC	5 cut(s)	200, 203, 280, 320, 698
Tsp45I	GTSAC	4 cut(s)	61, 217, 862, 871
TspDTI	ATGAA	4 cut(s)	203, 240, 417, 521
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	6 cut(s)	103, 161, 238, 499, 692, 751
Van91I	CCANNNNNTGG	1 cut(s)	586
VneI	GTGCAC	1 cut(s)	742
VspI	ATTAAT	1 cut(s)	1049
XapI	RAATTY	1 cut(s)	822
XceI	RCATGY	2 cut(s)	565, 638
XmnI	GAANNNNTTC	1 cut(s)	1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.