Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018801.1

Orthogroup ID

OG0003523

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 901

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018801.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atggatgatgagtatgctaagttcgtgaggcggatgaacccacccagagttgtgattgacaatgattcttgtgaggatgctactattatccaggttgacagtttcaacaaacatggaattctcctagatgttgtccaagtgcttgcagatgtgaaccttgtcataacaaaagcttatatctcatctgatggagtatggttcatggatgtgttcaacgtgattgaccgtgacggcaaaaaaatcagagacaaggacattatcaattatatacaaatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

92

Amino Acids

10.61

Weight (kDa)

4.59

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990
fragaria_vesca	FvH4_6g53840
malus_domestica	MD09G1008100.v1.1 MD17G1002600.v1.1
prunus_persica	Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1
pyrus_communis	pycom111g00650 pycom17g00680
rosa_chinensis	RchiOBHm_Chr2g0175981
rosa_laevigata	RLG00000022370
rosa_multiflora	Rmu_co8433007.1_g000001 Rmu_sc0012513.1_g000007 Rmu_sc0018801.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076890
rosa_rugosa	Rorug02G0589100 Rorug02G0589100
rosa_samantha	Rh2AG668300 Rh2BG679800 Rh2CG642700 Rh2DG693500
rosa_wichuraiana	Rw2G054790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	106, 214
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	117
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	4 cut(s)	10, 39, 82, 211
BsmAI	GTCTC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	101, 227
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	4 cut(s)	10, 39, 82, 211
BstMAI	GTCTC	1 cut(s)	240
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BtsCI	GGATG	4 cut(s)	10, 39, 82, 211
Cac8I	GCNNGC	1 cut(s)	144
CviAII	CATG	2 cut(s)	113, 202
CviJI	RGCY	1 cut(s)	173
CviKI_1	RGCY	1 cut(s)	173
DdeI	CTNAG	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	116, 205
FaiI	YATR	8 cut(s)	15, 114, 164, 177, 196, 203, 267, 269
FatI	CATG	2 cut(s)	112, 201
FokI	GGATG	4 cut(s)	17, 46, 89, 218
FspBI	CTAG	1 cut(s)	125
Hin1II	CATG	2 cut(s)	116, 205
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	97, 154
Hpy188I	TCNGA	2 cut(s)	187, 245
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	2 cut(s)	97, 154
HpyCH4III	ACNGT	2 cut(s)	101, 227
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	116, 205
LpnPI	CCDG	3 cut(s)	58, 77, 104
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	227
MluCI	AATT	2 cut(s)	117, 262
MnlI	CCTC	2 cut(s)	21, 67
MslI	CAYNNNNRTG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
NlaIII	CATG	2 cut(s)	116, 205
NmuCI	GTSAC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PsrI	GAACNNNNNNTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	4 cut(s)	96, 159, 175, 219
SfaNI	GCATC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	117, 262
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	101, 227
TaiI	ACGT	1 cut(s)	219
TasI	AATT	2 cut(s)	117, 262
TfiI	GAWTC	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	50, 190
XapI	RAATTY	1 cut(s)	117
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.