Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003523

Physical Location & Seq

Genomic Coordinates Forward (+)

88978408 .. 88982343

Gene Structure 3936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG679800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCCTATAATTCCTTGATTGATATATTACTCCTGGACCATTCATTGGAAAAAAGACTTGAAAGCAATGCCAGCTTTGTACCGTCTATGACAGATTCTGTTGGTGTGACGCCCTCAGAAGAGCATACCTTAATTGAGCTCAGTGGTACTGATAGAACTGGTCTATTGTCTGAAGTGTGTGCTGTTCTTGCAGACCTTCACTGTAATGTGGTAAATGCTGAGATATGGACACACAATGCCAGAGCTGCTGCTGTAGTTCATGTCACAGATGAAACCACTGGTTGCGCAATTAAAGATCCAGCGCGCCTCGCTTCAATAAAGGAGCTGCTTTGCAATGTCCTCAGAGGAAACAATGAGTTGAAGGCTGCCAAAATGACACTTGCAACCTCTGGAGTTACAAATAGAGATAGAAGGTTGCATCAGATTATGTTTGCCGACAGAGATTATGAAAGGGTTGGAAGAGCTGAATTACGCAGAGTTGAGGATAAGGGCTCAAGACCTCAAGTAACTGCCTTTGATTGCAGTCAGAAGGATTACACTGTCATTACTATGAGGGCAAAAGATCGACCAAAATTGTTGTTTGACATCATTTGCACTTTAACGGACATGCAATATGTGGTATTCCATGGAATGGTCAATACAGGGAGGACAGAAGCTTATCAGGAGTTTTATATTCGACATGTTGATGGAGTTCCTATAAGCTCAGAAGCCGAGCGAGAACGTGTCGTGCAGTGTCTTGAAGCAGCCATTGAAAGGCGGGCATCTGAGGGGCTTGAACTACAACTGTGCACTGATGACCGGGTTGGACTTCTCTCAGATATCACTCGGATATTCAGGGAGAACAGTTTGTCTATCAAACGAGCAGAAATTTCAACTAAAGGTGGAAAAGCTTTGGACACTTTCTATGTCACAGATGTGACAGGAAACCCAGTTGATCCCAAGATGATTGATTCAATTCGCAGAGAGATTGGCCAGACCATACTGCAGGTGAAATGCAATTCAACCCCTCCACCACCAAAGTCCCCTCAAGGGACAACAATGGGATTTCTCTTTGGGAACTTGTTCAAAGCTCGAAGTTTCCAGAGTCTGAAATTAATCAGATCCTACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

370

Amino Acids

41.29

Weight (kDa)

6.47

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	44 - 91	9e-09	ACT domain
ACT	PF01842	265 - 322	4.7e-09	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990
fragaria_vesca	FvH4_6g53840
malus_domestica	MD09G1008100.v1.1 MD17G1002600.v1.1
prunus_persica	Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1
pyrus_communis	pycom111g00650 pycom17g00680
rosa_chinensis	RchiOBHm_Chr2g0175981
rosa_laevigata	RLG00000022370
rosa_multiflora	Rmu_co8433007.1_g000001 Rmu_sc0012513.1_g000007 Rmu_sc0018801.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076890
rosa_rugosa	Rorug02G0589100 Rorug02G0589100
rosa_samantha	Rh2AG668300 Rh2BG679800 Rh2CG642700 Rh2DG693500
rosa_wichuraiana	Rw2G054790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	976
Acc16I	TGCGCA	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	976
AccB7I	CCANNNNNTGG	2 cut(s)	46, 631
AccII	CGCG	1 cut(s)	304
AciI	CCGC	1 cut(s)	757
AclWI	GGATC	3 cut(s)	290, 929, 1095
AcoI	YGGCCR	1 cut(s)	970
AcsI	RAATTY	1 cut(s)	867
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	2 cut(s)	81, 148
AfiI	CCNNNNNNNGG	4 cut(s)	46, 631, 753, 1029
AflIII	ACRYGT	2 cut(s)	679, 721
AjnI	CCWGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	914
AluBI	AGCT	9 cut(s)	75, 139, 245, 325, 464, 656, 702, 890, 1070
AluI	AGCT	9 cut(s)	75, 139, 245, 325, 464, 656, 702, 890, 1070
Alw21I	GWGCWC	2 cut(s)	141, 791
Alw44I	GTGCAC	1 cut(s)	787
AlwI	GGATC	3 cut(s)	290, 929, 1095
AlwNI	CAGNNNCTG	2 cut(s)	98, 1087
AoxI	GGCC	2 cut(s)	3, 970
ApaLI	GTGCAC	1 cut(s)	787
ApeKI	GCWGC	5 cut(s)	245, 248, 325, 365, 743
ApoI	RAATTY	1 cut(s)	867
AseI	ATTAAT	1 cut(s)	1094
Asp700I	GAANNNNTTC	1 cut(s)	1061
AspLEI	GCGC	3 cut(s)	287, 304, 306
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	800
AsuHPI	GGTGA	1 cut(s)	1000
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	791
BalI	TGGCCA	1 cut(s)	972
BanII	GRGCYC	2 cut(s)	141, 494
Bbv12I	GWGCWC	2 cut(s)	141, 791
BbvI	GCAGC	5 cut(s)	232, 235, 312, 352, 755
BccI	CCATC	1 cut(s)	680
BciT130I	CCWGG	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	800
BfmI	CTRYAG	2 cut(s)	252, 983
BfuAI	ACCTGC	1 cut(s)	976
BisI	GCNGC	5 cut(s)	246, 249, 326, 366, 744
BlsI	GCNGC	5 cut(s)	247, 250, 327, 367, 745
Bme1390I	CCNGG	2 cut(s)	35, 800
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	35, 800
BmrI	ACTGGG	1 cut(s)	923
BmsI	GCATC	2 cut(s)	427, 770
BmuI	ACTGGG	1 cut(s)	923
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	3 cut(s)	478, 486, 1011
BpuMI	CCSGG	1 cut(s)	800
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 631, 753, 1029
Bse1I	ACTGG	3 cut(s)	163, 283, 929
Bse3DI	GCAATG	2 cut(s)	73, 340
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	625
BseLI	CCNNNNNNNGG	4 cut(s)	46, 631, 753, 1029
BseMI	GCAATG	2 cut(s)	73, 340
BseMII	CTCAG	7 cut(s)	129, 154, 210, 355, 717, 756, 828
BseNI	ACTGG	3 cut(s)	163, 283, 929
BsePI	GCGCGC	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	791
BseXI	GCAGC	5 cut(s)	232, 235, 312, 352, 755
BsgI	GTGCAG	1 cut(s)	749
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	5, 972
BsiHKAI	GWGCWC	2 cut(s)	141, 791
BsiSI	CCGG	1 cut(s)	799
BslFI	GGGAC	2 cut(s)	1006, 1045
BslI	CCNNNNNNNGG	4 cut(s)	46, 631, 753, 1029
BsmFI	GGGAC	2 cut(s)	1006, 1045
BsnI	GGCC	2 cut(s)	5, 972
Bsp1286I	GDGCHC	3 cut(s)	141, 494, 791
Bsp143I	GATC	4 cut(s)	295, 562, 934, 1100
Bsp19I	CCATGG	1 cut(s)	625
BspACI	CCGC	1 cut(s)	757
BspANI	GGCC	2 cut(s)	5, 972
BspCNI	CTCAG	7 cut(s)	128, 153, 211, 354, 716, 757, 827
BspFNI	CGCG	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	987
BspMI	ACCTGC	1 cut(s)	976
BspPI	GGATC	3 cut(s)	290, 929, 1095
BspQI	GCTCTTC	2 cut(s)	114, 454
BsrDI	GCAATG	2 cut(s)	73, 340
BsrI	ACTGG	3 cut(s)	163, 283, 929
BssECI	CCNNGG	1 cut(s)	625
BssHII	GCGCGC	1 cut(s)	302
BssMI	GATC	4 cut(s)	295, 562, 934, 1100
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	5 cut(s)	84, 203, 541, 786, 845
Bst6I	CTCTTC	2 cut(s)	114, 454
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	73, 304, 759
BstDEI	CTNAG	8 cut(s)	115, 140, 219, 341, 703, 765, 814, 1110
BstDSI	CCRYGG	1 cut(s)	625
BstFNI	CGCG	1 cut(s)	304
BstHHI	GCGC	3 cut(s)	287, 304, 306
BstKTI	GATC	4 cut(s)	298, 565, 937, 1103
BstMBI	GATC	4 cut(s)	295, 562, 934, 1100
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 188, 245, 308
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	2 cut(s)	610, 683
BstSCI	CCNGG	2 cut(s)	33, 798
BstSFI	CTRYAG	2 cut(s)	252, 983
BstSLI	GKGCMC	1 cut(s)	791
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	5 cut(s)	232, 235, 312, 352, 755
BstX2I	RGATCY	2 cut(s)	295, 1100
BstYI	RGATCY	2 cut(s)	295, 1100
BsuRI	GGCC	2 cut(s)	5, 972
BtgI	CCRYGG	1 cut(s)	625
BtsI	GCAGTG	1 cut(s)	737
BtsIMutI	CAGTG	6 cut(s)	148, 199, 276, 537, 737, 789
BveI	ACCTGC	1 cut(s)	976
Cac8I	GCNNGC	3 cut(s)	73, 304, 759
CaiI	CAGNNNCTG	2 cut(s)	98, 1087
CfoI	GCGC	3 cut(s)	287, 304, 306
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	80, 147
CviAII	CATG	4 cut(s)	260, 607, 626, 680
CviQI	GTAC	2 cut(s)	80, 147
DdeI	CTNAG	8 cut(s)	115, 140, 219, 341, 703, 765, 814, 1110
DpnI	GATC	4 cut(s)	297, 564, 936, 1102
DpnII	GATC	4 cut(s)	295, 562, 934, 1100
EaeI	YGGCCR	1 cut(s)	970
Eam1104I	CTCTTC	2 cut(s)	114, 454
EarI	CTCTTC	2 cut(s)	114, 454
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	625
Eco24I	GRGCYC	2 cut(s)	141, 494
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	625
EcoT38I	GRGCYC	2 cut(s)	141, 494
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	4 cut(s)	263, 610, 629, 683
FaqI	GGGAC	2 cut(s)	1006, 1045
FatI	CATG	4 cut(s)	259, 606, 625, 679
FauI	CCCGC	1 cut(s)	750
Fnu4HI	GCNGC	5 cut(s)	246, 249, 326, 366, 744
FriOI	GRGCYC	2 cut(s)	141, 494
Fsp4HI	GCNGC	5 cut(s)	246, 249, 326, 366, 744
FspI	TGCGCA	1 cut(s)	286
GlaI	GCGC	3 cut(s)	286, 303, 305
GluI	GCNGC	5 cut(s)	246, 249, 326, 366, 744
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	5, 972
HapII	CCGG	1 cut(s)	799
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	3 cut(s)	287, 304, 306
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	4 cut(s)	263, 610, 629, 683
Hin6I	GCGC	3 cut(s)	285, 302, 304
HinP1I	GCGC	3 cut(s)	285, 302, 304
HindIII	AAGCTT	2 cut(s)	654, 888
HinfI	GANTC	3 cut(s)	95, 950, 1084
HpaII	CCGG	1 cut(s)	799
HphI	GGTGA	1 cut(s)	1000
Hpy166II	GTNNAC	1 cut(s)	789
Hpy188III	TCNNGA	5 cut(s)	390, 495, 662, 737, 1081
Hpy8I	GTNNAC	1 cut(s)	789
HpyAV	CCTTC	4 cut(s)	206, 355, 405, 523
HpyCH4III	ACNGT	5 cut(s)	84, 203, 541, 786, 845
HpyCH4IV	ACGT	1 cut(s)	721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 188, 245, 308
HpyF3I	CTNAG	8 cut(s)	115, 140, 219, 341, 703, 765, 814, 1110
HpySE526I	ACGT	1 cut(s)	721
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	4 cut(s)	263, 610, 629, 683
HspAI	GCGC	3 cut(s)	285, 302, 304
Kzo9I	GATC	4 cut(s)	295, 562, 934, 1100
LguI	GCTCTTC	2 cut(s)	114, 454
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	5 cut(s)	232, 235, 312, 352, 755
LweI	GCATC	2 cut(s)	427, 770
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	6 cut(s)	106, 262, 394, 505, 907, 916
MalI	GATC	4 cut(s)	297, 564, 936, 1102
MboI	GATC	4 cut(s)	295, 562, 934, 1100
MboII	GAAGA	2 cut(s)	131, 471
MflI	RGATCY	2 cut(s)	295, 1100
MhlI	GDGCHC	3 cut(s)	141, 494, 791
MlsI	TGGCCA	1 cut(s)	972
MluCI	AATT	9 cut(s)	10, 132, 288, 467, 572, 867, 954, 997, 1091
MluNI	TGGCCA	1 cut(s)	972
MlyI	GAGTC	1 cut(s)	1093
MmeI	TCCRAC	2 cut(s)	436, 784
Mox20I	TGGCCA	1 cut(s)	972
MroXI	GAANNNNTTC	1 cut(s)	1061
MscI	TGGCCA	1 cut(s)	972
MseI	TTAA	4 cut(s)	131, 291, 599, 1094
MslI	CAYNNNNRTG	4 cut(s)	204, 548, 684, 914
Msp20I	TGGCCA	1 cut(s)	972
MspI	CCGG	1 cut(s)	799
MspR9I	CCNGG	2 cut(s)	35, 800
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	4 cut(s)	72, 188, 245, 308
NciI	CCSGG	1 cut(s)	800
NcoI	CCATGG	1 cut(s)	625
NdeII	GATC	4 cut(s)	295, 562, 934, 1100
NlaIII	CATG	4 cut(s)	263, 610, 629, 683
NmeAIII	GCCGAG	1 cut(s)	736
NmuCI	GTSAC	4 cut(s)	106, 262, 907, 916
NsbI	TGCGCA	1 cut(s)	286
NspI	RCATGY	2 cut(s)	610, 683
OliI	CACNNNNGTG	1 cut(s)	914
PaqCI	CACCTGC	1 cut(s)	976
PauI	GCGCGC	1 cut(s)	302
PciI	ACATGT	1 cut(s)	679
PciSI	GCTCTTC	2 cut(s)	114, 454
PdmI	GAANNNNTTC	1 cut(s)	1061
PfeI	GAWTC	2 cut(s)	95, 950
PflMI	CCANNNNNTGG	2 cut(s)	46, 631
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	5 cut(s)	247, 250, 327, 367, 745
PleI	GAGTC	1 cut(s)	1092
PpsI	GAGTC	1 cut(s)	1092
PscI	ACATGT	1 cut(s)	679
PshBI	ATTAAT	1 cut(s)	1094
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	987
PstNI	CAGNNNCTG	2 cut(s)	98, 1087
PsuI	RGATCY	2 cut(s)	295, 1100
PteI	GCGCGC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	81, 148
RsaNI	GTAC	2 cut(s)	80, 147
RseI	CAYNNNNRTG	4 cut(s)	204, 548, 684, 914
SacI	GAGCTC	1 cut(s)	141
SapI	GCTCTTC	2 cut(s)	114, 454
SaqAI	TTAA	4 cut(s)	131, 291, 599, 1094
SatI	GCNGC	5 cut(s)	246, 249, 326, 366, 744
Sau3AI	GATC	4 cut(s)	295, 562, 934, 1100
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	1093
ScrFI	CCNGG	2 cut(s)	35, 800
SduI	GDGCHC	3 cut(s)	141, 494, 791
SfaNI	GCATC	2 cut(s)	427, 770
SfcI	CTRYAG	2 cut(s)	252, 983
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	4 cut(s)	204, 548, 684, 914
SmlI	CTYRAG	3 cut(s)	493, 501, 1026
SmoI	CTYRAG	3 cut(s)	493, 501, 1026
Sse9I	AATT	9 cut(s)	10, 132, 288, 467, 572, 867, 954, 997, 1091
SsiI	CCGC	1 cut(s)	757
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	33, 798
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	5 cut(s)	84, 203, 541, 786, 845
TaiI	ACGT	1 cut(s)	724
TaqI	TCGA	3 cut(s)	565, 676, 1072
TasI	AATT	9 cut(s)	10, 132, 288, 467, 572, 867, 954, 997, 1091
TfiI	GAWTC	2 cut(s)	95, 950
Tru1I	TTAA	4 cut(s)	131, 291, 599, 1094
Tru9I	TTAA	4 cut(s)	131, 291, 599, 1094
TscAI	CASTG	6 cut(s)	148, 206, 283, 544, 737, 796
TseFI	GTSAC	4 cut(s)	106, 262, 907, 916
TseI	GCWGC	5 cut(s)	245, 248, 325, 365, 743
Tsp45I	GTSAC	4 cut(s)	106, 262, 907, 916
TspDTI	ATGAA	4 cut(s)	33, 248, 285, 462
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	6 cut(s)	148, 206, 283, 544, 737, 796
Van91I	CCANNNNNTGG	2 cut(s)	46, 631
VneI	GTGCAC	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	1094
XapI	RAATTY	1 cut(s)	867
XceI	RCATGY	2 cut(s)	610, 683
XmnI	GAANNNNTTC	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.