Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003523

Physical Location & Seq

Genomic Coordinates Forward (+)

81282522 .. 81285880

Gene Structure 3359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG642700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATGTGTTCAACGTGATTGACCGTGATGGCAAAAAAATCAGAGACAAGGACATTATCAATTATATACAAATTAGACTTGAAAGCAATGCCAGCTTTGTACCGTCTATGACAGATTCTGTTGGTGTGACGCCCTCCGAAGAGCATACCTTAATTGAGCTCAGTGGTACTGATAGAACTGGTCTATTGTCTGAAGTGTGTGCTGTTCTTGCAGACCTTCACTGTAATGTGGTAAATGCTGAGATATGGACACACAATGCCAGAGCTGCTGCTGTAGTTCATGTTACAGATGAAACCACTGGTTGCGCAATTAAAGATCCAGCGCGCCTCGCTTCAATAAAGGAGCTGCTTTGCAATGTCCTCAGAGGAAACAATGAGTTGAAGGCTGCCAAAATGACACTTGCAACCTCTGGAGTTACAAATAGAGATAGAAGGTTGCATCAGATTATGTTTGCCGACAGAGATTATGAAAGGGTTGGAAGAGCTGAATTACGCAGAGTTGAGGATAAGGGCTCAAGACCTCAAGTAACTGCCTTTGATTGCAGTCAGAAGGATTACACTGTCATTACTATGAGGGCAAAAGATCGACCAAAATTGTTGTTTGACATCATTTGCACTTTAACGGACATGCAATATGTGGTATTCCATGGAATGGTCAATACAGGGAGGACAGAAGCTTATCAGGAGTTTTATATTCGACATGTTGATGGAGTTCCTATAAGCTCAGAAGCCGAACGAGAACGTGTCGTGCAGTGTCTTGAAGCAGCCATTGAAAGGCGGGCATCTGAGGGGCTTGAACTACAACTGTGCACTGATGACCGGGTTGGACTTCTCTCAGATATCACTCGGATATTCAGGGAGAACAGTTTGTCGATCAAACGAGCAGAAATTTCAACTAAAGGTGGAAAAGCTTTGGACACTTTCTATGTCACAGATGTGACAGGAAACCCAGTTGATCCCAAGATGATTGATTCAATTCGCAGAGAGATTGGCCAGACCATACTGCAGGTGAAATGCAATTCAACCCCTCCACCACCAAAGTCCCCTCAAGGGACAACAATGGGATTTCTCTTTGGGAACTTGTTCAAAGCTCGAAGTTTCCAGAGTCTTAAATTAATCAGATCCTACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

377

Amino Acids

42.22

Weight (kDa)

7.04

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	51 - 98	9.3e-09	ACT domain
ACT	PF01842	272 - 329	4.8e-09	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990 AT3G01990
fragaria_vesca	FvH4_6g53840
malus_domestica	MD09G1008100.v1.1 MD17G1002600.v1.1
prunus_persica	Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1 Prupe.3G308800_v2.0.a1
pyrus_communis	pycom111g00650 pycom17g00680
rosa_chinensis	RchiOBHm_Chr2g0175981
rosa_laevigata	RLG00000022370
rosa_multiflora	Rmu_co8433007.1_g000001 Rmu_sc0012513.1_g000007 Rmu_sc0018801.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076890
rosa_rugosa	Rorug02G0589100 Rorug02G0589100
rosa_samantha	Rh2AG668300 Rh2BG679800 Rh2CG642700 Rh2DG693500
rosa_wichuraiana	Rw2G054790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	997
Acc16I	TGCGCA	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	997
AccB7I	CCANNNNNTGG	1 cut(s)	652
AccII	CGCG	1 cut(s)	325
AciI	CCGC	1 cut(s)	778
AclWI	GGATC	3 cut(s)	311, 950, 1116
AcoI	YGGCCR	1 cut(s)	991
AcsI	RAATTY	1 cut(s)	888
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	102, 169
AfiI	CCNNNNNNNGG	3 cut(s)	652, 774, 1050
AflIII	ACRYGT	2 cut(s)	700, 742
AleI	CACNNNNGTG	1 cut(s)	935
AluBI	AGCT	9 cut(s)	96, 160, 266, 346, 485, 677, 723, 911, 1091
AluI	AGCT	9 cut(s)	96, 160, 266, 346, 485, 677, 723, 911, 1091
Alw21I	GWGCWC	2 cut(s)	162, 812
Alw26I	GTCTC	1 cut(s)	39
Alw44I	GTGCAC	1 cut(s)	808
AlwI	GGATC	3 cut(s)	311, 950, 1116
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	991
ApaLI	GTGCAC	1 cut(s)	808
ApeKI	GCWGC	5 cut(s)	266, 269, 346, 386, 764
ApoI	RAATTY	1 cut(s)	888
AseI	ATTAAT	1 cut(s)	1115
Asp700I	GAANNNNTTC	1 cut(s)	1082
AspLEI	GCGC	3 cut(s)	308, 325, 327
AsuC2I	CCSGG	1 cut(s)	821
AsuHPI	GGTGA	1 cut(s)	1021
BaeGI	GKGCMC	1 cut(s)	812
BalI	TGGCCA	1 cut(s)	993
BanII	GRGCYC	2 cut(s)	162, 515
Bbv12I	GWGCWC	2 cut(s)	162, 812
BbvI	GCAGC	5 cut(s)	253, 256, 333, 373, 776
BccI	CCATC	2 cut(s)	23, 701
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	2 cut(s)	273, 1004
BfuAI	ACCTGC	1 cut(s)	997
BisI	GCNGC	5 cut(s)	267, 270, 347, 387, 765
BlsI	GCNGC	5 cut(s)	268, 271, 348, 388, 766
Bme1390I	CCNGG	1 cut(s)	821
BmrFI	CCNGG	1 cut(s)	821
BmrI	ACTGGG	1 cut(s)	944
BmsI	GCATC	2 cut(s)	448, 791
BmuI	ACTGGG	1 cut(s)	944
BpmI	CTGGAG	1 cut(s)	432
BpuEI	CTTGAG	3 cut(s)	499, 507, 1032
BpuMI	CCSGG	1 cut(s)	821
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	3 cut(s)	652, 774, 1050
Bse1I	ACTGG	3 cut(s)	184, 304, 950
Bse3DI	GCAATG	2 cut(s)	94, 361
BseDI	CCNNGG	1 cut(s)	646
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	652, 774, 1050
BseMI	GCAATG	2 cut(s)	94, 361
BseMII	CTCAG	6 cut(s)	175, 231, 376, 738, 777, 849
BseNI	ACTGG	3 cut(s)	184, 304, 950
BsePI	GCGCGC	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	812
BseXI	GCAGC	5 cut(s)	253, 256, 333, 373, 776
BsgI	GTGCAG	1 cut(s)	770
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	1 cut(s)	993
BsiHKAI	GWGCWC	2 cut(s)	162, 812
BsiSI	CCGG	1 cut(s)	820
BslFI	GGGAC	2 cut(s)	1027, 1066
BslI	CCNNNNNNNGG	3 cut(s)	652, 774, 1050
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	1027, 1066
BsnI	GGCC	1 cut(s)	993
Bsp1286I	GDGCHC	3 cut(s)	162, 515, 812
Bsp143I	GATC	5 cut(s)	316, 583, 873, 955, 1121
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	1 cut(s)	778
BspANI	GGCC	1 cut(s)	993
BspCNI	CTCAG	6 cut(s)	174, 232, 375, 737, 778, 848
BspFNI	CGCG	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	1008
BspMI	ACCTGC	1 cut(s)	997
BspPI	GGATC	3 cut(s)	311, 950, 1116
BspQI	GCTCTTC	2 cut(s)	135, 475
BsrDI	GCAATG	2 cut(s)	94, 361
BsrI	ACTGG	3 cut(s)	184, 304, 950
BssECI	CCNNGG	1 cut(s)	646
BssHII	GCGCGC	1 cut(s)	323
BssMI	GATC	5 cut(s)	316, 583, 873, 955, 1121
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	646
Bst4CI	ACNGT	6 cut(s)	26, 105, 224, 562, 807, 866
Bst6I	CTCTTC	2 cut(s)	135, 475
BstACI	GRCGYC	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	94, 325, 780
BstDEI	CTNAG	7 cut(s)	161, 240, 362, 724, 786, 835, 1131
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	325
BstHHI	GCGC	3 cut(s)	308, 325, 327
BstKTI	GATC	5 cut(s)	319, 586, 876, 958, 1124
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	5 cut(s)	316, 583, 873, 955, 1121
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 209, 266, 329
BstNSI	RCATGY	2 cut(s)	631, 704
BstSCI	CCNGG	1 cut(s)	819
BstSFI	CTRYAG	2 cut(s)	273, 1004
BstSLI	GKGCMC	1 cut(s)	812
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	5 cut(s)	253, 256, 333, 373, 776
BstX2I	RGATCY	2 cut(s)	316, 1121
BstYI	RGATCY	2 cut(s)	316, 1121
BsuRI	GGCC	1 cut(s)	993
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	758
BtsIMutI	CAGTG	6 cut(s)	169, 220, 297, 558, 758, 810
BveI	ACCTGC	1 cut(s)	997
Cac8I	GCNNGC	3 cut(s)	94, 325, 780
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	3 cut(s)	308, 325, 327
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	101, 168
CviAII	CATG	4 cut(s)	281, 628, 647, 701
CviQI	GTAC	2 cut(s)	101, 168
DdeI	CTNAG	7 cut(s)	161, 240, 362, 724, 786, 835, 1131
DpnI	GATC	5 cut(s)	318, 585, 875, 957, 1123
DpnII	GATC	5 cut(s)	316, 583, 873, 955, 1121
EaeI	YGGCCR	1 cut(s)	991
Eam1104I	CTCTTC	2 cut(s)	135, 475
EarI	CTCTTC	2 cut(s)	135, 475
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	646
Eco24I	GRGCYC	2 cut(s)	162, 515
Eco32I	GATATC	1 cut(s)	841
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	160
EcoRV	GATATC	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	646
EcoT38I	GRGCYC	2 cut(s)	162, 515
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	4 cut(s)	284, 631, 650, 704
FaqI	GGGAC	2 cut(s)	1027, 1066
FatI	CATG	4 cut(s)	280, 627, 646, 700
FauI	CCCGC	1 cut(s)	771
Fnu4HI	GCNGC	5 cut(s)	267, 270, 347, 387, 765
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	162, 515
Fsp4HI	GCNGC	5 cut(s)	267, 270, 347, 387, 765
FspI	TGCGCA	1 cut(s)	307
GlaI	GCGC	3 cut(s)	307, 324, 326
GluI	GCNGC	5 cut(s)	267, 270, 347, 387, 765
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	993
HapII	CCGG	1 cut(s)	820
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	3 cut(s)	308, 325, 327
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	284, 631, 650, 704
Hin6I	GCGC	3 cut(s)	306, 323, 325
HinP1I	GCGC	3 cut(s)	306, 323, 325
HindIII	AAGCTT	2 cut(s)	675, 909
HinfI	GANTC	3 cut(s)	116, 971, 1105
HpaII	CCGG	1 cut(s)	820
HphI	GGTGA	1 cut(s)	1021
Hpy166II	GTNNAC	1 cut(s)	810
Hpy188III	TCNNGA	5 cut(s)	411, 516, 683, 758, 1102
Hpy8I	GTNNAC	1 cut(s)	810
HpyAV	CCTTC	4 cut(s)	227, 376, 426, 544
HpyCH4III	ACNGT	6 cut(s)	26, 105, 224, 562, 807, 866
HpyCH4IV	ACGT	2 cut(s)	15, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 209, 266, 329
HpyF3I	CTNAG	7 cut(s)	161, 240, 362, 724, 786, 835, 1131
HpySE526I	ACGT	2 cut(s)	15, 742
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	4 cut(s)	284, 631, 650, 704
HspAI	GCGC	3 cut(s)	306, 323, 325
Kzo9I	GATC	5 cut(s)	316, 583, 873, 955, 1121
LguI	GCTCTTC	2 cut(s)	135, 475
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	5 cut(s)	253, 256, 333, 373, 776
LweI	GCATC	2 cut(s)	448, 791
MaeII	ACGT	2 cut(s)	15, 742
MaeIII	GTNAC	6 cut(s)	127, 283, 415, 526, 928, 937
MalI	GATC	5 cut(s)	318, 585, 875, 957, 1123
MboI	GATC	5 cut(s)	316, 583, 873, 955, 1121
MboII	GAAGA	2 cut(s)	152, 492
MflI	RGATCY	2 cut(s)	316, 1121
MhlI	GDGCHC	3 cut(s)	162, 515, 812
MlsI	TGGCCA	1 cut(s)	993
MluNI	TGGCCA	1 cut(s)	993
MlyI	GAGTC	1 cut(s)	1114
MmeI	TCCRAC	2 cut(s)	457, 805
Mox20I	TGGCCA	1 cut(s)	993
MroXI	GAANNNNTTC	1 cut(s)	1082
MscI	TGGCCA	1 cut(s)	993
MseI	TTAA	5 cut(s)	152, 312, 620, 1110, 1115
MslI	CAYNNNNRTG	4 cut(s)	225, 569, 705, 935
Msp20I	TGGCCA	1 cut(s)	993
MspI	CCGG	1 cut(s)	820
MspR9I	CCNGG	1 cut(s)	821
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	4 cut(s)	93, 209, 266, 329
NciI	CCSGG	1 cut(s)	821
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	5 cut(s)	316, 583, 873, 955, 1121
NlaIII	CATG	4 cut(s)	284, 631, 650, 704
NmuCI	GTSAC	3 cut(s)	127, 928, 937
NsbI	TGCGCA	1 cut(s)	307
NspI	RCATGY	2 cut(s)	631, 704
OliI	CACNNNNGTG	1 cut(s)	935
PaqCI	CACCTGC	1 cut(s)	997
PauI	GCGCGC	1 cut(s)	323
PciI	ACATGT	1 cut(s)	700
PciSI	GCTCTTC	2 cut(s)	135, 475
PdmI	GAANNNNTTC	1 cut(s)	1082
PfeI	GAWTC	2 cut(s)	116, 971
PflMI	CCANNNNNTGG	1 cut(s)	652
PkrI	GCNGC	5 cut(s)	268, 271, 348, 388, 766
PleI	GAGTC	1 cut(s)	1113
PpsI	GAGTC	1 cut(s)	1113
PscI	ACATGT	1 cut(s)	700
PshBI	ATTAAT	1 cut(s)	1115
Psp124BI	GAGCTC	1 cut(s)	162
PstI	CTGCAG	1 cut(s)	1008
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	316, 1121
PteI	GCGCGC	1 cut(s)	323
RsaI	GTAC	2 cut(s)	102, 169
RsaNI	GTAC	2 cut(s)	101, 168
RseI	CAYNNNNRTG	4 cut(s)	225, 569, 705, 935
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	2 cut(s)	135, 475
SaqAI	TTAA	5 cut(s)	152, 312, 620, 1110, 1115
SatI	GCNGC	5 cut(s)	267, 270, 347, 387, 765
Sau3AI	GATC	5 cut(s)	316, 583, 873, 955, 1121
SchI	GAGTC	1 cut(s)	1114
ScrFI	CCNGG	1 cut(s)	821
SduI	GDGCHC	3 cut(s)	162, 515, 812
SfaNI	GCATC	2 cut(s)	448, 791
SfcI	CTRYAG	2 cut(s)	273, 1004
SmiMI	CAYNNNNRTG	4 cut(s)	225, 569, 705, 935
SmlI	CTYRAG	3 cut(s)	514, 522, 1047
SmoI	CTYRAG	3 cut(s)	514, 522, 1047
SsiI	CCGC	1 cut(s)	778
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	819
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	6 cut(s)	26, 105, 224, 562, 807, 866
TaiI	ACGT	2 cut(s)	18, 745
TaqI	TCGA	4 cut(s)	586, 697, 872, 1093
TfiI	GAWTC	2 cut(s)	116, 971
Tru1I	TTAA	5 cut(s)	152, 312, 620, 1110, 1115
Tru9I	TTAA	5 cut(s)	152, 312, 620, 1110, 1115
TscAI	CASTG	6 cut(s)	169, 227, 304, 565, 758, 817
TseFI	GTSAC	3 cut(s)	127, 928, 937
TseI	GCWGC	5 cut(s)	266, 269, 346, 386, 764
Tsp45I	GTSAC	3 cut(s)	127, 928, 937
TspDTI	ATGAA	3 cut(s)	269, 306, 483
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	6 cut(s)	169, 227, 304, 565, 758, 817
Van91I	CCANNNNNTGG	1 cut(s)	652
VneI	GTGCAC	1 cut(s)	808
VspI	ATTAAT	1 cut(s)	1115
XapI	RAATTY	1 cut(s)	888
XceI	RCATGY	2 cut(s)	631, 704
XmnI	GAANNNNTTC	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.