Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010864

Physical Location & Seq

Genomic Coordinates Forward (+)

546739 .. 548846

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGGCGGATAATGCTTATCTGATGCAGTTTGTTGACGAAACCTCTTTTTACAACCGAATCGTTCTGAGTCATCTTTTGCCGGCGAATCTATGGGAACCCTTACCTCATTTTCTCCAGACATGGCTCCGAAATTACCTCGCCGGAACCCTACTATACTTCATCTCCGGTTTCCTCTGGTGCTTCTACATCTATTACCTTAAAATCAACGTTTACCTTCCCAAAGATGCAATTCCTACAATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGGCTATGCCATGGTACACTCTTCTTCCAACTGTCTCCGAGAGTATGATTGAACGTGGTTGGACCAAATGTTTTGCTAGCATAGGCGAATTCGGCTGGATTCTGTATTTTGTTTACATCGCCATCTATCTTGTTTTCGTTGAGTTTGGTATTTATTGGATGCACAGAGAGCTTCATGACATTAAGCCTCTCTATAAGTATCTCCATGCCACCCATCATATCTACAACAAGCAGAATACACTCTCTCCATTTGCCGGGCTTGCATTTCACCCAGTAGACGGGATACTTCAGGCTGTACCGCATGTGATAGCGCTGTTTATAGTGCCAATTCATTTCACAACTCATATAGGTCTTTTGTTCATGGAAGCGATATGGACGGCGAACATCCATGACTGCATCCATGGCAACATCTGGCCAGTAATGGGTGCAGGATACCATACGATACACCACACGACATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCTCTTAGGGATCCTCTCTTAGAAGAAGATGACAACAAAGACAGCTTCAAGAAAGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000248 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0070704 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

281

Amino Acids

33.14

Weight (kDa)

6.51

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	133 - 262	8.2e-20	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02580 AT3G02590 AT3G02590
fragaria_vesca	FvH4_2g26170
malus_domestica	MD09G1254800.v1.1 MD17G1247400.v1.1
prunus_persica	Prupe.3G144900_v2.0.a1
pyrus_communis	pycom09g17070 pycom17g24880
rosa_chinensis	RchiOBHm_Chr6g0294591
rosa_laevigata	RLG00000011856
rosa_multiflora	Rmu_sc0006264.1_g000012 Rmu_sc0007845.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173180
rosa_rugosa	Rorug06G0246200
rosa_samantha	Rh6AG358500 Rh6BG365700 Rh6CG372300 Rh6DG359100
rosa_wichuraiana	Rw6G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	552
AciI	CCGC	3 cut(s)	5, 8, 575
AclI	AACGTT	1 cut(s)	210
AclWI	GGATC	2 cut(s)	788, 801
AcoI	YGGCCR	1 cut(s)	689
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	2 cut(s)	293, 573
AfeI	AGCGCT	1 cut(s)	588
AfiI	CCNNNNNNNGG	3 cut(s)	530, 554, 698
AgsI	TTSAA	2 cut(s)	329, 832
AluBI	AGCT	2 cut(s)	448, 828
AluI	AGCT	2 cut(s)	448, 828
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	2 cut(s)	788, 801
Aor51HI	AGCGCT	1 cut(s)	588
AoxI	GGCC	1 cut(s)	689
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	536
AsuNHI	GCTAGC	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	339
BalI	TGGCCA	1 cut(s)	691
BamHI	GGATCC	1 cut(s)	793
BccI	CCATC	3 cut(s)	407, 498, 760
BceAI	ACGGC	1 cut(s)	669
BciVI	GTATCC	2 cut(s)	552, 701
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	590
BfuI	GTATCC	2 cut(s)	552, 701
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	532
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	4 cut(s)	99, 128, 148, 795
BmrFI	CCNGG	1 cut(s)	532
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	4 cut(s)	15, 217, 426, 681
BmtI	GCTAGC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	542
BpmI	CTGGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	532
BsaJI	CCNNGG	2 cut(s)	287, 676
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 505, 535
Bsc4I	CCNNNNNNNGG	3 cut(s)	530, 554, 698
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	2 cut(s)	548, 692
Bse3DI	GCAATG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	287, 676
BseGI	GGATG	5 cut(s)	441, 660, 672, 771, 780
BseLI	CCNNNNNNNGG	3 cut(s)	530, 554, 698
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	548, 692
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	1 cut(s)	691
BsiSI	CCGG	4 cut(s)	83, 144, 168, 531
BslI	CCNNNNNNNGG	3 cut(s)	530, 554, 698
BsmAI	GTCTC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	691
Bsp143I	GATC	1 cut(s)	793
Bsp19I	CCATGG	2 cut(s)	287, 676
BspACI	CCGC	3 cut(s)	5, 8, 575
BspANI	GGCC	1 cut(s)	691
BspCNI	CTCAG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	4 cut(s)	99, 128, 148, 795
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	2 cut(s)	788, 801
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	548, 692
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	287, 676
BssMI	GATC	1 cut(s)	793
BssT1I	CCWWGG	2 cut(s)	287, 676
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	84, 355, 537
BstDEI	CTNAG	3 cut(s)	68, 788, 802
BstDSI	CCRYGG	2 cut(s)	287, 676
BstF5I	GGATG	5 cut(s)	441, 660, 672, 771, 780
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	1 cut(s)	796
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	793
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 278, 369, 445, 536, 678
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	793
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	793
BsuI	GTATCC	2 cut(s)	552, 701
BsuRI	GGCC	1 cut(s)	691
BtgI	CCRYGG	2 cut(s)	287, 676
BtgZI	GCGATG	1 cut(s)	379
BtsCI	GGATG	5 cut(s)	441, 660, 672, 771, 780
Cac8I	GCNNGC	3 cut(s)	84, 355, 537
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	292, 572
CviAII	CATG	8 cut(s)	123, 288, 452, 482, 578, 637, 665, 677
CviQI	GTAC	2 cut(s)	292, 572
DdeI	CTNAG	3 cut(s)	68, 788, 802
DpnI	GATC	1 cut(s)	795
DpnII	GATC	1 cut(s)	793
EaeI	YGGCCR	1 cut(s)	689
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	287, 676
Eco47I	GGWCC	1 cut(s)	339
Eco47III	AGCGCT	1 cut(s)	588
Eco57I	CTGAAG	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	365
EcoT14I	CCWWGG	2 cut(s)	287, 676
ErhI	CCWWGG	2 cut(s)	287, 676
FaeI	CATG	8 cut(s)	126, 291, 455, 485, 581, 640, 668, 680
FatI	CATG	8 cut(s)	122, 287, 451, 481, 577, 636, 664, 676
FauNDI	CATATG	1 cut(s)	761
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	5 cut(s)	448, 647, 659, 778, 787
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	590
HaeIII	GGCC	1 cut(s)	691
HapII	CCGG	4 cut(s)	83, 144, 168, 531
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	8 cut(s)	126, 291, 455, 485, 581, 640, 668, 680
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	4 cut(s)	60, 70, 88, 376
HpaII	CCGG	4 cut(s)	83, 144, 168, 531
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	5 cut(s)	37, 214, 294, 391, 553
Hpy188I	TCNGA	4 cut(s)	24, 69, 131, 316
Hpy188III	TCNNGA	3 cut(s)	118, 452, 832
Hpy8I	GTNNAC	5 cut(s)	37, 214, 294, 391, 553
HpyAV	CCTTC	2 cut(s)	227, 271
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	2 cut(s)	210, 331
HpyCH4V	TGCA	7 cut(s)	28, 230, 259, 439, 539, 672, 704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 278, 369, 445, 536, 678
HpyF3I	CTNAG	3 cut(s)	68, 788, 802
HpySE526I	ACGT	2 cut(s)	210, 331
Hsp92II	CATG	8 cut(s)	126, 291, 455, 485, 581, 640, 668, 680
HspAI	GCGC	1 cut(s)	587
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	793
LmnI	GCTCC	1 cut(s)	132
LweI	GCATC	4 cut(s)	15, 217, 426, 681
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	210, 331
MalI	GATC	1 cut(s)	795
MboI	GATC	1 cut(s)	793
MboII	GAAGA	4 cut(s)	290, 293, 818, 821
MflI	RGATCY	1 cut(s)	793
MlsI	TGGCCA	1 cut(s)	691
MluCI	AATT	4 cut(s)	133, 231, 365, 603
MluNI	TGGCCA	1 cut(s)	691
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	317, 329
MnlI	CCTC	6 cut(s)	55, 117, 149, 185, 474, 807
Mox20I	TGGCCA	1 cut(s)	691
MroNI	GCCGGC	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	691
MseI	TTAA	2 cut(s)	201, 459
MslI	CAYNNNNRTG	2 cut(s)	744, 764
Msp20I	TGGCCA	1 cut(s)	691
MspI	CCGG	4 cut(s)	83, 144, 168, 531
MspR9I	CCNGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	6 cut(s)	14, 278, 369, 445, 536, 678
NaeI	GCCGGC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	532
NcoI	CCATGG	2 cut(s)	287, 676
NdeI	CATATG	1 cut(s)	761
NdeII	GATC	1 cut(s)	793
NgoMIV	GCCGGC	1 cut(s)	82
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	8 cut(s)	126, 291, 455, 485, 581, 640, 668, 680
NlaIV	GGNNCC	4 cut(s)	99, 128, 148, 795
NspI	RCATGY	1 cut(s)	581
PagI	TCATGA	1 cut(s)	451
PdiI	GCCGGC	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	60, 88, 376
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Psp1406I	AACGTT	1 cut(s)	210
PspN4I	GGNNCC	4 cut(s)	99, 128, 148, 795
PspPI	GGNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	793
RsaI	GTAC	2 cut(s)	293, 573
RsaNI	GTAC	2 cut(s)	292, 572
RseI	CAYNNNNRTG	2 cut(s)	744, 764
SaqAI	TTAA	2 cut(s)	201, 459
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	793
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	532
SfaNI	GCATC	4 cut(s)	15, 217, 426, 681
SinI	GGWCC	1 cut(s)	339
SmiMI	CAYNNNNRTG	2 cut(s)	744, 764
Sse9I	AATT	4 cut(s)	133, 231, 365, 603
SsiI	CCGC	3 cut(s)	5, 8, 575
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	530
StyI	CCWWGG	2 cut(s)	287, 676
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	2 cut(s)	213, 334
TasI	AATT	4 cut(s)	133, 231, 365, 603
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	60, 88, 376
Tru1I	TTAA	2 cut(s)	201, 459
Tru9I	TTAA	2 cut(s)	201, 459
TspDTI	ATGAA	5 cut(s)	151, 290, 440, 596, 625
VpaK11BI	GGWCC	1 cut(s)	339
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	552
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.