Rh6DG359100

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010864
Physical Location & Seq
Forward (+)
55687485 .. 55690525
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG359100.1

Sequence Viewer

Length: 819 bp
ATGGAGTCCTCGTACCTGAACTTGTTCGTGGAGGAGACAAGCTTCTACAACCGCATTGTCCTCGACAGCCTGTTGCCCAACTGGGTGTGGGCCCCGCTGCCCCACTTCTTCCAGTCGTGGCTGCGCAACTACCTCGGCGGCACCTTAATCTACCTCCTCTCCGGCTTCCTCTGGTGCTTCTACATTTACTCCCTCAAACGCAACGTCTACCTTCCAAAAGATGCCATTCCCTCTAATAAAGCCATGCTTTTGCAAATATATGTTGCCATGAAGGCCATGCCTTGGTACTGTGCTCTACCGTCTCTCTCTGAGTACATGGTTGAAAATGGCTGGGCCAGGTGCTTCTCAAGAATAAGTGATGTAGGTTGGGTTGCTTACCTCATCTATTTATCAATTTATCTTATAATCGTGGAGTTTGGAATCTATTGGATGCATAGGGAGTTGCATGACATAAAGCCTCTGTATAAATGGCTTCATAATATACATCACATTTACAACAAGCAGAACACCCTCTCTCCATTTGCTGGTTTGGCTTTCCACCCACTTGATGGGATACTGCAGGCAGTTCCGCATGTTATAGCTCTGTTTCTTGTGCCAATGCATTTTACTACTCACATAGCGCTCCTATTTATTGAAGCCATATGGACAGCAAATATTCACGATTGCATCCATGCCAAAATATGGCCTGTGATGGGTGCTGGCTACCACACCATTCATCATACTACCTATCGCCATAATTATGGCCATTATACAATATGGATGGACTGGATGTTTGGAACTCTTCGTGACCCTATCAATGAGGAATCAAAGGTCTTATGA

Protein Analysis

272

Amino Acids

32.16

Weight (kDa)

6.99

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 132 - 260 6.8e-21 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010864)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02580 AT3G02590 AT3G02590
fragaria_vesca FvH4_2g26170
malus_domestica MD09G1254800.v1.1 MD17G1247400.v1.1
prunus_persica Prupe.3G144900_v2.0.a1
pyrus_communis pycom09g17070 pycom17g24880
rosa_chinensis RchiOBHm_Chr6g0294591
rosa_laevigata RLG00000011856
rosa_multiflora Rmu_sc0006264.1_g000012 Rmu_sc0007845.1_g000002
rosa_roxburghii Rroxscaffold_7G00173180
rosa_rugosa Rorug06G0246200
rosa_samantha Rh6AG358500 Rh6BG365700 Rh6CG372300 Rh6DG359100
rosa_wichuraiana Rw6G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 404
Acc16I TGCGCA 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 140
AccB7I CCANNNNNTGG 4 cut(s) 282, 524, 548, 681
AccI GTMKAC 1 cut(s) 207
AciI CCGC 4 cut(s) 52, 95, 138, 569
AcoI YGGCCR 1 cut(s) 742
AfaI GTAC 3 cut(s) 14, 287, 314
AfeI AGCGCT 1 cut(s) 621
AfiI CCNNNNNNNGG 5 cut(s) 282, 524, 548, 681, 692
AgsI TTSAA 2 cut(s) 323, 635
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 2 cut(s) 42, 581
AluI AGCT 2 cut(s) 42, 581
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 2 cut(s) 29, 306
Aor51HI AGCGCT 1 cut(s) 621
AoxI GGCC 5 cut(s) 90, 273, 333, 683, 742
ApaI GGGCCC 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 97, 121
ArsI GACNNNNNNTTYG 4 cut(s) 189, 221, 755, 787
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 2 cut(s) 126, 622
AspS9I GGNCC 3 cut(s) 90, 91, 333
BaeGI GKGCMC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 744
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 2 cut(s) 84, 108
BccI CCATC 3 cut(s) 542, 685, 754
BcgI CGANNNNNNTGC 4 cut(s) 43, 77, 115, 149
BciT130I CCWGG 1 cut(s) 337
BciVI GTATCC 1 cut(s) 546
BcoDI GTCTC 2 cut(s) 29, 306
BfmI CTRYAG 1 cut(s) 557
BfoI RGCGCY 1 cut(s) 623
BfuI GTATCC 1 cut(s) 546
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 3 cut(s) 98, 122, 139
BlsI GCNGC 3 cut(s) 99, 123, 140
Bme1390I CCNGG 1 cut(s) 337
BmgT120I GGNCC 3 cut(s) 90, 91, 333
BmiI GGNNCC 3 cut(s) 92, 93, 142
BmrFI CCNGG 1 cut(s) 337
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 3 cut(s) 211, 420, 675
BmuI ACTGGG 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 133, 281
BsaXI ACNNNNNCTCC 7 cut(s) 26, 143, 173, 173, 203, 499, 529
Bsc4I CCNNNNNNNGG 5 cut(s) 282, 524, 548, 681, 692
Bse1I ACTGG 3 cut(s) 86, 112, 770
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 2 cut(s) 133, 281
BseGI GGATG 4 cut(s) 435, 666, 765, 774
BseLI CCNNNNNNNGG 5 cut(s) 282, 524, 548, 681, 692
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 3 cut(s) 86, 112, 770
BseRI GAGGAG 2 cut(s) 47, 146
BseSI GKGCMC 1 cut(s) 94
BseXI GCAGC 2 cut(s) 84, 108
BseYI CCCAGC 1 cut(s) 330
BshFI GGCC 5 cut(s) 92, 275, 335, 685, 744
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 5 cut(s) 282, 524, 548, 681, 692
BsmAI GTCTC 2 cut(s) 29, 306
BsmBI CGTCTC 1 cut(s) 306
BsnI GGCC 5 cut(s) 92, 275, 335, 685, 744
Bsp120I GGGCCC 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 94, 295
BspACI CCGC 4 cut(s) 52, 95, 138, 569
BspANI GGCC 5 cut(s) 92, 275, 335, 685, 744
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 92, 93, 142
BspMAI CTGCAG 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 140
BsrI ACTGG 3 cut(s) 86, 112, 770
BssECI CCNNGG 2 cut(s) 133, 281
BssT1I CCWWGG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 290, 300
Bst6I CTCTTC 1 cut(s) 786
BstC8I GCNNGC 2 cut(s) 561, 700
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 4 cut(s) 435, 666, 765, 774
BstH2I RGCGCY 1 cut(s) 623
BstHHI GCGC 2 cut(s) 126, 622
BstMAI GTCTC 2 cut(s) 29, 306
BstMWI GCNNNNNNNGC 2 cut(s) 272, 530
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 557
BstSLI GKGCMC 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 84, 108
BstXI CCANNNNNNTGG 1 cut(s) 740
BsuI GTATCC 1 cut(s) 546
BsuRI GGCC 5 cut(s) 92, 275, 335, 685, 744
BtsCI GGATG 4 cut(s) 435, 666, 765, 774
Cac8I GCNNGC 2 cut(s) 561, 700
CfoI GCGC 2 cut(s) 126, 622
Cfr13I GGNCC 3 cut(s) 90, 91, 333
Csp6I GTAC 3 cut(s) 13, 286, 313
CviAII CATG 7 cut(s) 244, 268, 277, 316, 446, 572, 671
CviQI GTAC 3 cut(s) 13, 286, 313
DdeI CTNAG 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 742
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
Eco130I CCWWGG 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 94
Eco47III AGCGCT 1 cut(s) 621
EcoO109I RGGNCCY 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 281
EcoT22I ATGCAT 2 cut(s) 435, 603
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 281
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 7 cut(s) 247, 271, 280, 319, 449, 575, 674
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FatI CATG 7 cut(s) 243, 267, 276, 315, 445, 571, 670
FauI CCCGC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 641
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 3 cut(s) 98, 122, 139
FokI GGATG 4 cut(s) 442, 653, 772, 781
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 98, 122, 139
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 2 cut(s) 125, 621
GluI GCNGC 3 cut(s) 98, 122, 139
GsaI CCCAGC 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 623
HaeIII GGCC 5 cut(s) 92, 275, 335, 685, 744
HapII CCGG 1 cut(s) 162
HhaI GCGC 2 cut(s) 126, 622
Hin1II CATG 7 cut(s) 247, 271, 280, 319, 449, 575, 674
Hin6I GCGC 2 cut(s) 124, 620
HinP1I GCGC 2 cut(s) 124, 620
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 3 cut(s) 5, 420, 803
HpaII CCGG 1 cut(s) 162
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 3 cut(s) 348, 659, 785
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 221, 265
HpyCH4III ACNGT 2 cut(s) 290, 300
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 6 cut(s) 253, 433, 445, 559, 601, 666
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 530
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 7 cut(s) 247, 271, 280, 319, 449, 575, 674
HspAI GCGC 2 cut(s) 124, 620
LmnI GCTCC 1 cut(s) 627
Lsp1109I GCAGC 2 cut(s) 84, 108
LweI GCATC 3 cut(s) 211, 420, 675
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 785
MboII GAAGA 2 cut(s) 100, 773
MhlI GDGCHC 2 cut(s) 94, 295
MlsI TGGCCA 1 cut(s) 744
MluCI AATT 2 cut(s) 393, 736
MluNI TGGCCA 1 cut(s) 744
MlyI GAGTC 1 cut(s) 14
Mox20I TGGCCA 1 cut(s) 744
Mph1103I ATGCAT 2 cut(s) 435, 603
MroXI GAANNNNTTC 1 cut(s) 23
MscI TGGCCA 1 cut(s) 744
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 738
Msp20I TGGCCA 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 337
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 2 cut(s) 272, 530
NdeI CATATG 1 cut(s) 641
NlaIII CATG 7 cut(s) 247, 271, 280, 319, 449, 575, 674
NlaIV GGNNCC 3 cut(s) 92, 93, 142
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 785
NsbI TGCGCA 1 cut(s) 125
NsiI ATGCAT 2 cut(s) 435, 603
NspI RCATGY 1 cut(s) 575
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 420, 803
PflMI CCANNNNNTGG 4 cut(s) 282, 524, 548, 681
PkrI GCNGC 3 cut(s) 99, 123, 140
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PsiI TTATAA 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 330
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 3 cut(s) 92, 93, 142
PspOMI GGGCCC 1 cut(s) 90
PspPI GGNCC 3 cut(s) 90, 91, 333
PstI CTGCAG 1 cut(s) 561
RsaI GTAC 3 cut(s) 14, 287, 314
RsaNI GTAC 3 cut(s) 13, 286, 313
RseI CAYNNNNRTG 1 cut(s) 738
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 3 cut(s) 98, 122, 139
Sau96I GGNCC 3 cut(s) 90, 91, 333
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 2 cut(s) 94, 295
SfaNI GCATC 3 cut(s) 211, 420, 675
SfcI CTRYAG 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 738
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 2 cut(s) 393, 736
SsiI CCGC 4 cut(s) 52, 95, 138, 569
SspI AATATT 1 cut(s) 655
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 2 cut(s) 290, 300
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 63
TasI AATT 2 cut(s) 393, 736
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 2 cut(s) 420, 803
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TseFI GTSAC 1 cut(s) 785
TseI GCWGC 2 cut(s) 97, 121
Tsp45I GTSAC 1 cut(s) 785
TspDTI ATGAA 3 cut(s) 284, 464, 704
Van91I CCANNNNNTGG 4 cut(s) 282, 524, 548, 681
XceI RCATGY 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 23
Zsp2I ATGCAT 2 cut(s) 435, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.