Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007845.1

Orthogroup ID

OG0010864

Physical Location & Seq

Genomic Coordinates Reverse (-)

6184 .. 9511

Gene Structure 3328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007845.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atgccaagaggaaaagagatttttccttctaacccgttcaatgtctgtgcactcattacttcattagtatcaaacattatctgtctccatgtttcagattgcattgccagctgctctctctctaaaataccagctgcggatccaccttctctctctctctcccccgctcgcctccacaccaccactagtcgttcaacatcttcctcctcgaaatcaccaccggccaccgtcgccggccggcaccgcccgatcgcgtctgggggaatggagtcctcgtacctgaacttgttcgtggaggagacaagcttctacaaccgcattgtcctcgacagcctgttgcccaactgggtgtgggtctcgctgccccacttcttccagtcgtggctgcgcaactacctcggcggcaccttaatctacctcgtctccggcttcctctggtgcttctacatttactacctcaaacgcaacgtctacctcccgaaagatgccattccctctaataaagccatgcttttgcaaatatatgttgccatgaaggccatgccttggtactgtgctcttccgtctctctcagagtacatggttgaaaatggctgggcaaggtgcttctcaagaataagtgatgtaggttgggttgcttacctcatctacttatcaatttatcttataatcgtggagtttggaatctattggatgcatagggagttgcatgacataaagcctctgtataaatggcttcataatatacatcacatttacaacaagcagaacaccctctctccatttgctggtttggctttccacccacttgatgggatactgcaggcagttccgcatgttatagctctgtttcttgtgccaatgcattttactactcacatagcgctcctatttattgaagccatatggacagcaaatattcacgattgcatccatgccaaaatatggcctgtgatgggtgctggctaccacaccattcatcatacgacctatcgccataattatggccattatactatatggatggactggatgtttggaactcttcgtgaccctatcaatgaggaatcaaaggtcttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000248 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0070704 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

360

Amino Acids

41.28

Weight (kDa)

8.53

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02580 AT3G02590 AT3G02590
fragaria_vesca	FvH4_2g26170
malus_domestica	MD09G1254800.v1.1 MD17G1247400.v1.1
prunus_persica	Prupe.3G144900_v2.0.a1
pyrus_communis	pycom09g17070 pycom17g24880
rosa_chinensis	RchiOBHm_Chr6g0294591
rosa_laevigata	RLG00000011856
rosa_multiflora	Rmu_sc0006264.1_g000012 Rmu_sc0007845.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173180
rosa_rugosa	Rorug06G0246200
rosa_samantha	Rh6AG358500 Rh6BG365700 Rh6CG372300 Rh6DG359100
rosa_wichuraiana	Rw6G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
Acc16I	TGCGCA	1 cut(s)	389
AccB1I	GGYRCC	2 cut(s)	240, 404
AccB7I	CCANNNNNTGG	4 cut(s)	546, 788, 812, 945
AccBSI	CCGCTC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	471
AccII	CGCG	1 cut(s)	254
AciI	CCGC	6 cut(s)	137, 165, 244, 316, 402, 833
AclWI	GGATC	2 cut(s)	134, 147
AcoI	YGGCCR	3 cut(s)	222, 235, 1006
AfaI	GTAC	3 cut(s)	278, 551, 578
AfeI	AGCGCT	1 cut(s)	885
AfiI	CCNNNNNNNGG	5 cut(s)	546, 788, 812, 945, 956
AgsI	TTSAA	4 cut(s)	40, 195, 587, 899
AhlI	ACTAGT	1 cut(s)	185
AluBI	AGCT	4 cut(s)	111, 134, 306, 845
AluI	AGCT	4 cut(s)	111, 134, 306, 845
Alw21I	GWGCWC	2 cut(s)	52, 559
Alw26I	GTCTC	5 cut(s)	89, 293, 361, 427, 570
Alw44I	GTGCAC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	134, 147
Aor51HI	AGCGCT	1 cut(s)	885
AoxI	GGCC	5 cut(s)	222, 235, 537, 947, 1006
ApaLI	GTGCAC	1 cut(s)	48
ApeKI	GCWGC	4 cut(s)	111, 134, 361, 385
ArsI	GACNNNNNNTTYG	4 cut(s)	453, 485, 1019, 1051
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	390, 886
AsuHPI	GGTGA	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	1008
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	240, 404
Bbv12I	GWGCWC	2 cut(s)	52, 559
BbvI	GCAGC	4 cut(s)	98, 121, 348, 372
BccI	CCATC	3 cut(s)	806, 949, 1018
BcgI	CGANNNNNNTGC	4 cut(s)	307, 341, 379, 413
BciVI	GTATCC	1 cut(s)	810
BcoDI	GTCTC	5 cut(s)	89, 293, 361, 427, 570
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	821
BfoI	RGCGCY	1 cut(s)	887
BfuI	GTATCC	1 cut(s)	810
BglI	GCCNNNNNGGC	1 cut(s)	536
BisI	GCNGC	5 cut(s)	112, 135, 362, 386, 403
BlsI	GCNGC	5 cut(s)	113, 136, 363, 387, 404
BmiI	GGNNCC	3 cut(s)	141, 242, 406
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	3 cut(s)	475, 684, 939
BmuI	ACTGGG	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	595
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	397, 545
BsaXI	ACNNNNNCTCC	6 cut(s)	260, 290, 407, 437, 763, 793
Bsc4I	CCNNNNNNNGG	5 cut(s)	546, 788, 812, 945, 956
Bse118I	RCCGGY	3 cut(s)	220, 233, 237
Bse1I	ACTGG	3 cut(s)	350, 376, 1034
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	397, 545
BseGI	GGATG	4 cut(s)	699, 930, 1029, 1038
BseLI	CCNNNNNNNGG	5 cut(s)	546, 788, 812, 945, 956
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	3 cut(s)	350, 376, 1034
BseRI	GAGGAG	2 cut(s)	196, 311
BseSI	GKGCMC	1 cut(s)	52
BseX3I	CGGCCG	1 cut(s)	235
BseXI	GCAGC	4 cut(s)	98, 121, 348, 372
BseYI	CCCAGC	1 cut(s)	594
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	2 cut(s)	238, 252
BshFI	GGCC	5 cut(s)	224, 237, 539, 949, 1008
BshNI	GGYRCC	2 cut(s)	240, 404
BsiEI	CGRYCG	2 cut(s)	238, 252
BsiHKAI	GWGCWC	2 cut(s)	52, 559
BsiSI	CCGG	4 cut(s)	221, 234, 238, 426
BslI	CCNNNNNNNGG	5 cut(s)	546, 788, 812, 945, 956
BsmAI	GTCTC	5 cut(s)	89, 293, 361, 427, 570
BsmBI	CGTCTC	2 cut(s)	427, 570
BsnI	GGCC	5 cut(s)	224, 237, 539, 949, 1008
Bso31I	GGTCTC	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	52, 559
Bsp143I	GATC	2 cut(s)	139, 249
BspACI	CCGC	6 cut(s)	137, 165, 244, 316, 402, 833
BspANI	GGCC	5 cut(s)	224, 237, 539, 949, 1008
BspCNI	CTCAG	1 cut(s)	584
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	3 cut(s)	141, 242, 406
BspMAI	CTGCAG	1 cut(s)	825
BspPI	GGATC	2 cut(s)	134, 147
BspQI	GCTCTTC	1 cut(s)	564
BspT107I	GGYRCC	2 cut(s)	240, 404
BspTNI	GGTCTC	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	3 cut(s)	220, 233, 237
BsrI	ACTGG	3 cut(s)	350, 376, 1034
BssAI	RCCGGY	3 cut(s)	220, 233, 237
BssECI	CCNNGG	2 cut(s)	397, 545
BssMI	GATC	2 cut(s)	139, 249
BssT1I	CCWWGG	1 cut(s)	545
Bst4CI	ACNGT	2 cut(s)	229, 554
Bst6I	CTCTTC	2 cut(s)	564, 1050
BstC8I	GCNNGC	6 cut(s)	109, 169, 235, 239, 825, 964
BstDEI	CTNAG	1 cut(s)	571
BstF5I	GGATG	4 cut(s)	699, 930, 1029, 1038
BstFNI	CGCG	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	887
BstHHI	GCGC	2 cut(s)	390, 886
BstKTI	GATC	2 cut(s)	142, 252
BstMAI	GTCTC	5 cut(s)	89, 293, 361, 427, 570
BstMBI	GATC	2 cut(s)	139, 249
BstMCI	CGRYCG	2 cut(s)	238, 252
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 230, 243, 536, 794
BstNSI	RCATGY	1 cut(s)	839
BstSFI	CTRYAG	1 cut(s)	821
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	4 cut(s)	98, 121, 348, 372
BstX2I	RGATCY	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	1004
BstYI	RGATCY	1 cut(s)	139
BstZI	CGGCCG	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	810
BsuRI	GGCC	5 cut(s)	224, 237, 539, 949, 1008
BtsCI	GGATG	4 cut(s)	699, 930, 1029, 1038
Cac8I	GCNNGC	6 cut(s)	109, 169, 235, 239, 825, 964
CfoI	GCGC	2 cut(s)	390, 886
Cfr10I	RCCGGY	3 cut(s)	220, 233, 237
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	3 cut(s)	277, 550, 577
CviAII	CATG	8 cut(s)	89, 508, 532, 541, 580, 710, 836, 935
CviQI	GTAC	3 cut(s)	277, 550, 577
DdeI	CTNAG	1 cut(s)	571
DpnI	GATC	2 cut(s)	141, 251
DpnII	GATC	2 cut(s)	139, 249
EaeI	YGGCCR	3 cut(s)	222, 235, 1006
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	564, 1050
EarI	CTCTTC	2 cut(s)	564, 1050
EclXI	CGGCCG	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	545
Eco31I	GGTCTC	1 cut(s)	361
Eco47III	AGCGCT	1 cut(s)	885
Eco52I	CGGCCG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	545
EcoT22I	ATGCAT	2 cut(s)	699, 867
ErhI	CCWWGG	1 cut(s)	545
Esp3I	CGTCTC	2 cut(s)	427, 570
FaeI	CATG	8 cut(s)	92, 511, 535, 544, 583, 713, 839, 938
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	8 cut(s)	88, 507, 531, 540, 579, 709, 835, 934
FauI	CCCGC	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	905
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	5 cut(s)	112, 135, 362, 386, 403
FokI	GGATG	4 cut(s)	706, 917, 1036, 1045
Fsp4HI	GCNGC	5 cut(s)	112, 135, 362, 386, 403
FspBI	CTAG	1 cut(s)	186
FspI	TGCGCA	1 cut(s)	389
GlaI	GCGC	2 cut(s)	389, 885
GluI	GCNGC	5 cut(s)	112, 135, 362, 386, 403
GsaI	CCCAGC	1 cut(s)	598
HaeII	RGCGCY	1 cut(s)	887
HaeIII	GGCC	5 cut(s)	224, 237, 539, 949, 1008
HapII	CCGG	4 cut(s)	221, 234, 238, 426
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	2 cut(s)	390, 886
Hin1II	CATG	8 cut(s)	92, 511, 535, 544, 583, 713, 839, 938
Hin6I	GCGC	2 cut(s)	388, 884
HinP1I	GCGC	2 cut(s)	388, 884
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	3 cut(s)	269, 684, 1067
HpaII	CCGG	4 cut(s)	221, 234, 238, 426
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	50, 472
Hpy188I	TCNGA	2 cut(s)	97, 574
Hpy188III	TCNNGA	4 cut(s)	478, 612, 923, 1049
Hpy8I	GTNNAC	2 cut(s)	50, 472
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	36, 156, 529
HpyCH4III	ACNGT	2 cut(s)	229, 554
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	8 cut(s)	50, 102, 517, 697, 709, 823, 865, 930
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 230, 243, 536, 794
HpyF3I	CTNAG	1 cut(s)	571
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	8 cut(s)	92, 511, 535, 544, 583, 713, 839, 938
HspAI	GCGC	2 cut(s)	388, 884
KroI	GCCGGC	2 cut(s)	233, 237
KroNI	GCCGGC	2 cut(s)	235, 239
Kzo9I	GATC	2 cut(s)	139, 249
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	1 cut(s)	891
Lsp1109I	GCAGC	4 cut(s)	98, 121, 348, 372
LweI	GCATC	3 cut(s)	475, 684, 939
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	1049
MalI	GATC	2 cut(s)	141, 251
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	2 cut(s)	139, 249
MboII	GAAGA	4 cut(s)	192, 364, 551, 1037
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	52, 559
MlsI	TGGCCA	1 cut(s)	1008
MluCI	AATT	2 cut(s)	657, 1000
MluNI	TGGCCA	1 cut(s)	1008
MlyI	GAGTC	1 cut(s)	278
Mox20I	TGGCCA	1 cut(s)	1008
Mph1103I	ATGCAT	2 cut(s)	699, 867
MroNI	GCCGGC	2 cut(s)	233, 237
MroXI	GAANNNNTTC	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	1008
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	1002
Msp20I	TGGCCA	1 cut(s)	1008
MspA1I	CMGCKG	2 cut(s)	111, 134
MspI	CCGG	4 cut(s)	221, 234, 238, 426
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	5 cut(s)	108, 230, 243, 536, 794
NaeI	GCCGGC	2 cut(s)	235, 239
NdeI	CATATG	1 cut(s)	905
NdeII	GATC	2 cut(s)	139, 249
NgoMIV	GCCGGC	2 cut(s)	233, 237
NlaIII	CATG	8 cut(s)	92, 511, 535, 544, 583, 713, 839, 938
NlaIV	GGNNCC	3 cut(s)	141, 242, 406
NmeAIII	GCCGAG	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	1049
NsbI	TGCGCA	1 cut(s)	389
NsiI	ATGCAT	2 cut(s)	699, 867
NspI	RCATGY	1 cut(s)	839
PciSI	GCTCTTC	1 cut(s)	564
PdiI	GCCGGC	2 cut(s)	235, 239
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	684, 1067
PflMI	CCANNNNNTGG	4 cut(s)	546, 788, 812, 945
PkrI	GCNGC	5 cut(s)	113, 136, 363, 387, 404
Ple19I	CGATCG	1 cut(s)	252
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PsiI	TTATAA	1 cut(s)	668
PspFI	CCCAGC	1 cut(s)	594
PspN4I	GGNNCC	3 cut(s)	141, 242, 406
PstI	CTGCAG	1 cut(s)	825
PsuI	RGATCY	1 cut(s)	139
PvuI	CGATCG	1 cut(s)	252
PvuII	CAGCTG	2 cut(s)	111, 134
RsaI	GTAC	3 cut(s)	278, 551, 578
RsaNI	GTAC	3 cut(s)	277, 550, 577
RseI	CAYNNNNRTG	1 cut(s)	1002
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	5 cut(s)	112, 135, 362, 386, 403
Sau3AI	GATC	2 cut(s)	139, 249
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	52, 559
SfaNI	GCATC	3 cut(s)	475, 684, 939
SfcI	CTRYAG	1 cut(s)	821
SmiMI	CAYNNNNRTG	1 cut(s)	1002
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
SpeI	ACTAGT	1 cut(s)	185
Sse9I	AATT	2 cut(s)	657, 1000
SsiI	CCGC	6 cut(s)	137, 165, 244, 316, 402, 833
SspI	AATATT	1 cut(s)	919
SspMI	CTAG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	2 cut(s)	229, 554
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	2 cut(s)	209, 327
TasI	AATT	2 cut(s)	657, 1000
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	1 cut(s)	405
TfiI	GAWTC	2 cut(s)	684, 1067
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TseFI	GTSAC	1 cut(s)	1049
TseI	GCWGC	4 cut(s)	111, 134, 361, 385
Tsp45I	GTSAC	1 cut(s)	1049
TspDTI	ATGAA	4 cut(s)	51, 548, 728, 968
TspGWI	ACGGA	1 cut(s)	552
Van91I	CCANNNNNTGG	4 cut(s)	546, 788, 812, 945
VneI	GTGCAC	1 cut(s)	48
XceI	RCATGY	1 cut(s)	839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	809
XmiI	GTMKAC	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	1 cut(s)	186
Zsp2I	ATGCAT	2 cut(s)	699, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.