Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010864

Physical Location & Seq

Genomic Coordinates Forward (+)

39237416 .. 39237655

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0246200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCAGACATCGGGAATGGTCCTGAGGTGGCGCTGATCCACGCAGATTCGACTCTGGTGGTACTGGGGGCTGCAGGGGCTAATCAGGATAGCCATTGGTATATGGTTGGTCGTCTGTTGGTGATGAAAGCAAAGCTGCCGGGGTTTAAAGGTACCATATCCACCATCTGGCATATTAGATCGGGTCTAACCATCCAGGATGCAAGTGAGCAGTTTGTGTTTCAATTTGAGAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000248 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0070704 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

79

Amino Acids

8.6

Weight (kDa)

5.44

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02580 AT3G02590 AT3G02590
fragaria_vesca	FvH4_2g26170
malus_domestica	MD09G1254800.v1.1 MD17G1247400.v1.1
prunus_persica	Prupe.3G144900_v2.0.a1
pyrus_communis	pycom09g17070 pycom17g24880
rosa_chinensis	RchiOBHm_Chr6g0294591
rosa_laevigata	RLG00000011856
rosa_multiflora	Rmu_sc0006264.1_g000012 Rmu_sc0007845.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173180
rosa_rugosa	Rorug06G0246200
rosa_samantha	Rh6AG358500 Rh6BG365700 Rh6CG372300 Rh6DG359100
rosa_wichuraiana	Rw6G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	168
AclWI	GGATC	1 cut(s)	31
AfaI	GTAC	2 cut(s)	63, 154
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
AlwI	GGATC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	71, 136
Asp718I	GGTACC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	58, 123
BccI	CCATC	2 cut(s)	173, 200
BciT130I	CCWGG	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	2 cut(s)	72, 137
BlsI	GCNGC	2 cut(s)	73, 138
Bme1390I	CCNGG	2 cut(s)	141, 197
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	141, 197
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	69
Bse21I	CCTNAGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	2 cut(s)	192, 205
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	58, 123
BshNI	GGYRCC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	36, 179
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	154
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	2 cut(s)	36, 179
Bst2UI	CCWGG	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	192, 205
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	39, 182
BstMBI	GATC	2 cut(s)	36, 179
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	139, 195
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	58, 123
Bsu36I	CCTNAGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	192, 205
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	62, 153
CviJI	RGCY	4 cut(s)	71, 80, 93, 136
CviKI_1	RGCY	4 cut(s)	71, 80, 93, 136
CviQI	GTAC	2 cut(s)	62, 153
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	38, 181
DpnII	GATC	2 cut(s)	36, 179
DraI	TTTAAA	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	20
Eco81I	CCTNAGG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	195
FaiI	YATR	4 cut(s)	102, 104, 158, 174
Fnu4HI	GCNGC	2 cut(s)	72, 137
FokI	GGATG	2 cut(s)	179, 212
Fsp4HI	GCNGC	2 cut(s)	72, 137
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	72, 137
HaeII	RGCGCY	1 cut(s)	35
HapII	CCGG	1 cut(s)	140
HhaI	GCGC	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	47, 52
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	133
Hpy188III	TCNNGA	3 cut(s)	13, 23, 86
HpyCH4V	TGCA	2 cut(s)	74, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	24
HspAI	GCGC	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	36, 179
LpnPI	CCDG	9 cut(s)	36, 41, 50, 60, 71, 153, 154, 182, 209
Lsp1109I	GCAGC	2 cut(s)	58, 123
LweI	GCATC	1 cut(s)	190
MalI	GATC	2 cut(s)	38, 181
MboI	GATC	2 cut(s)	36, 179
MluCI	AATT	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	19
MseI	TTAA	1 cut(s)	147
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	141, 197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	2 cut(s)	36, 179
NlaIV	GGNNCC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	73, 138
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	76
RsaI	GTAC	2 cut(s)	63, 154
RsaNI	GTAC	2 cut(s)	62, 153
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	72, 137
Sau3AI	GATC	2 cut(s)	36, 179
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	141, 197
SetI	ASST	3 cut(s)	30, 138, 154
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	20
Sse9I	AATT	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	139, 195
TaqI	TCGA	1 cut(s)	50
TasI	AATT	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseI	GCWGC	2 cut(s)	71, 136
TspDTI	ATGAA	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.