Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010864

Physical Location & Seq

Genomic Coordinates Forward (+)

23107568 .. 23109364

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGGAGTCCTACCTGAACCCGTTCCTGGACGAGACGACGTTCTATAACCGCATTGTGCTCGGCAGCCTCGTGCCCAATAGAGTGTGGGACCCACTCCCCCACTTCTTCCAGACGTGGCTGCGCAACTACGTCGGAGGGACCTTGCTCTACCTCGTCTCCGGCTTCCTCTGGTGCCTCTACATTTATTACTTGAAACGCAACACTTACATCCCCAAAGATGCCGTTCCCTCGAACAAAGCCATGCTTTTGCAAATATATGTTGCCATGAAGGCCATGCCTTGGTACTGTGCTCTTCCAACTGTTTCTGAGTACATGGTTGAAAATGGCTGGGCAAAGTGCTTTGCAAGAATAAGTGATGTGGGTTGGCCTGCTTACCTCTTGTATTTAGCAATTTATCTTGTATTCGTGGAGTTCGGAATATATTGGATGCACAGAGAGTTGCATGACATAAAACCTCTGTATAAATATCTTCATGCAACCCATCATATCTACAACAAGCAGAACACCCTCTCTCCGTTTGCTGTTTTGGTTTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000248 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0070704 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

181

Amino Acids

21.36

Weight (kDa)

8.33

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02580 AT3G02590 AT3G02590
fragaria_vesca	FvH4_2g26170
malus_domestica	MD09G1254800.v1.1 MD17G1247400.v1.1
prunus_persica	Prupe.3G144900_v2.0.a1
pyrus_communis	pycom09g17070 pycom17g24880
rosa_chinensis	RchiOBHm_Chr6g0294591
rosa_laevigata	RLG00000011856
rosa_multiflora	Rmu_sc0006264.1_g000012 Rmu_sc0007845.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173180
rosa_rugosa	Rorug06G0246200
rosa_samantha	Rh6AG358500 Rh6BG365700 Rh6CG372300 Rh6DG359100
rosa_wichuraiana	Rw6G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	174
AccB7I	CCANNNNNTGG	1 cut(s)	282
AciI	CCGC	1 cut(s)	52
AfaI	GTAC	2 cut(s)	287, 314
AfiI	CCNNNNNNNGG	2 cut(s)	28, 282
AgsI	TTSAA	2 cut(s)	196, 323
AjiI	CACGTC	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	27
Alw21I	GWGCWC	2 cut(s)	63, 295
Alw26I	GTCTC	2 cut(s)	29, 163
AoxI	GGCC	2 cut(s)	273, 368
ApeKI	GCWGC	2 cut(s)	66, 121
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	91, 141
AvaII	GGWCC	2 cut(s)	91, 141
BaeGI	GKGCMC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	174
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	2 cut(s)	63, 295
BbvI	GCAGC	2 cut(s)	78, 108
BccI	CCATC	1 cut(s)	492
BceAI	ACGGC	1 cut(s)	209
BcgI	CGANNNNNNTGC	4 cut(s)	43, 77, 115, 149
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	29, 163
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	67, 122
BlsI	GCNGC	2 cut(s)	68, 123
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	91, 141
BmgBI	CACGTC	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	91, 141
BmiI	GGNNCC	4 cut(s)	92, 93, 142, 176
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	211, 420
BsaJI	CCNNGG	1 cut(s)	281
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 499, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 282
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	210, 435
BseLI	CCNNNNNNNGG	2 cut(s)	28, 282
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	78, 108
BseYI	CCCAGC	1 cut(s)	330
BshFI	GGCC	2 cut(s)	275, 370
BshNI	GGYRCC	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	63, 295
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	104, 154
BslI	CCNNNNNNNGG	2 cut(s)	28, 282
BsmAI	GTCTC	2 cut(s)	29, 163
BsmBI	CGTCTC	2 cut(s)	29, 163
BsmFI	GGGAC	2 cut(s)	104, 154
BsnI	GGCC	2 cut(s)	275, 370
Bsp1286I	GDGCHC	3 cut(s)	63, 78, 295
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	275, 370
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	4 cut(s)	92, 93, 142, 176
BspQI	GCTCTTC	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	290, 304
Bst6I	CTCTTC	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	309, 540
BstF5I	GGATG	2 cut(s)	210, 435
BstHHI	GCGC	1 cut(s)	126
BstMAI	GTCTC	2 cut(s)	29, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	78, 108
BsuRI	GGCC	2 cut(s)	275, 370
BtrI	CACGTC	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	210, 435
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	91, 141
Csp6I	GTAC	2 cut(s)	286, 313
CviAII	CATG	6 cut(s)	244, 268, 277, 316, 446, 476
CviJI	RGCY	7 cut(s)	69, 121, 165, 242, 275, 330, 370
CviKI_1	RGCY	7 cut(s)	69, 121, 165, 242, 275, 330, 370
CviQI	GTAC	2 cut(s)	286, 313
DdeI	CTNAG	2 cut(s)	309, 540
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	91, 141
EcoO109I	RGGNCCY	2 cut(s)	91, 141
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
Esp3I	CGTCTC	2 cut(s)	29, 163
FaeI	CATG	6 cut(s)	247, 271, 280, 319, 449, 479
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	2 cut(s)	104, 154
FatI	CATG	6 cut(s)	243, 267, 276, 315, 445, 475
Fnu4HI	GCNGC	2 cut(s)	67, 122
FokI	GGATG	2 cut(s)	197, 442
Fsp4HI	GCNGC	2 cut(s)	67, 122
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	67, 122
GsaI	CCCAGC	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	275, 370
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	6 cut(s)	247, 271, 280, 319, 449, 479
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	162
Hpy188I	TCNGA	3 cut(s)	137, 310, 419
Hpy188III	TCNNGA	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	43, 137
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	290, 304
HpyCH4IV	ACGT	3 cut(s)	41, 116, 132
HpyCH4V	TGCA	5 cut(s)	253, 347, 433, 445, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	309, 540
HpySE526I	ACGT	3 cut(s)	41, 116, 132
Hsp92II	CATG	6 cut(s)	247, 271, 280, 319, 449, 479
HspAI	GCGC	1 cut(s)	124
KflI	GGGWCCC	1 cut(s)	91
LguI	GCTCTTC	1 cut(s)	300
LpnPI	CCDG	8 cut(s)	14, 29, 41, 125, 157, 175, 316, 384
Lsp1109I	GCAGC	2 cut(s)	78, 108
LweI	GCATC	2 cut(s)	211, 420
MaeII	ACGT	3 cut(s)	41, 116, 132
MboII	GAAGA	3 cut(s)	100, 287, 464
MhlI	GDGCHC	3 cut(s)	63, 78, 295
MluCI	AATT	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	115, 323
MnlI	CCTC	9 cut(s)	80, 131, 164, 179, 188, 241, 389, 468, 521
MroXI	GAANNNNTTC	1 cut(s)	23
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	272
NlaIII	CATG	6 cut(s)	247, 271, 280, 319, 449, 479
NlaIV	GGNNCC	4 cut(s)	92, 93, 142, 176
NmeAIII	GCCGAG	1 cut(s)	42
NsbI	TGCGCA	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	68, 123
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PpuMI	RGGWCCY	2 cut(s)	91, 141
Psp5II	RGGWCCY	2 cut(s)	91, 141
Psp6I	CCWGG	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	4 cut(s)	92, 93, 142, 176
PspPI	GGNCC	2 cut(s)	91, 141
PspPPI	RGGWCCY	2 cut(s)	91, 141
RsaI	GTAC	2 cut(s)	287, 314
RsaNI	GTAC	2 cut(s)	286, 313
SapI	GCTCTTC	1 cut(s)	300
SatI	GCNGC	2 cut(s)	67, 122
Sau96I	GGNCC	2 cut(s)	91, 141
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	3 cut(s)	63, 78, 295
SetI	ASST	8 cut(s)	18, 44, 119, 135, 146, 156, 381, 460
SfaNI	GCATC	2 cut(s)	211, 420
SinI	GGWCC	2 cut(s)	91, 141
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	290, 304
TaiI	ACGT	3 cut(s)	44, 119, 135
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	393
TatI	WGTACW	1 cut(s)	312
TseI	GCWGC	2 cut(s)	66, 121
TspDTI	ATGAA	2 cut(s)	284, 464
TspGWI	ACGGA	1 cut(s)	507
Van91I	CCANNNNNTGG	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	91, 141
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.