Rh6CG372300

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010864
Physical Location & Seq
Forward (+)
55874418 .. 55877093
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG372300.1

Sequence Viewer

Length: 837 bp
ATGGAGTCCTCGTCGTCGCCGTCGTCCTCGTACCTGAACTTGTTCGTGGAGGAGACAAGCTTCTACAACCGCATTGTCCTCGACAGCCTGTTGCCCAACTGGGTGTGGGTCCCGCTGCCCCACTTCTTCCAGTCGTGGCTGCGCAACTACCTCGGCGGGACCTTAATCTACCTCGTCTCCGGATTCCTCTGGTGCTTCTACATTTACTACCTCAAACGCAACGTCTACCTCCCGAAAGATGCCATTCCCTCTAATAAAGCCATGCTTTTGCAAATATATGTTGCCATGAAGGCCATGCCTTGGTACTGTGCTCTTCCGTCTTTCTCGGAGTACATGGTTGAAAATGGCTGGGCAAGGTGCTTCTCAAGAATAAGTGATGTAGGTTGGGTTGCTTACCTCATCTATTTATCAATCTATCTTATAATCGTGGAGTTTGGAATCTATTGGATGCATAGGGAGTTGCATGACATAAAGCCTCTGTATAAATGGCTTCATAATATACATCACATTTACAACAAGCAGAACACCCTCTCTCCATTTGCTGGTTTGGCTTTCCACCCACTTGATGGGATACTGCAGGCAGTTCCGCATGTTATAGCTCTGTTTCTTGTGCCAATGCATTTTACTACTCACATAGCGCTCCTATTTATTGAAGCCATATGGACAGCAAATATTCACGATTGCATCCATGCCAAAATATGGCCTGTGATGGGTGCTGGCTACCACACCATTCATCATACTACCTATCGCCATAATTATGGCCATTATACTATATGGATGGACTGGATGTTTGGAACTCTTCGTGACCCTATCAATGAGGAATCAAAGGTCTTATGA

Protein Analysis

278

Amino Acids

32.82

Weight (kDa)

6.99

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 138 - 266 7.1e-21 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010864)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02580 AT3G02590 AT3G02590
fragaria_vesca FvH4_2g26170
malus_domestica MD09G1254800.v1.1 MD17G1247400.v1.1
prunus_persica Prupe.3G144900_v2.0.a1
pyrus_communis pycom09g17070 pycom17g24880
rosa_chinensis RchiOBHm_Chr6g0294591
rosa_laevigata RLG00000011856
rosa_multiflora Rmu_sc0006264.1_g000012 Rmu_sc0007845.1_g000002
rosa_roxburghii Rroxscaffold_7G00173180
rosa_rugosa Rorug06G0246200
rosa_samantha Rh6AG358500 Rh6BG365700 Rh6CG372300 Rh6DG359100
rosa_wichuraiana Rw6G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
Acc16I TGCGCA 1 cut(s) 143
AccB7I CCANNNNNTGG 4 cut(s) 300, 542, 566, 699
AccI GTMKAC 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 4 cut(s) 70, 113, 156, 587
AcoI YGGCCR 1 cut(s) 760
AfaI GTAC 3 cut(s) 32, 305, 332
AfeI AGCGCT 1 cut(s) 639
AfiI CCNNNNNNNGG 5 cut(s) 300, 542, 566, 699, 710
AgsI TTSAA 2 cut(s) 341, 653
AluBI AGCT 2 cut(s) 60, 599
AluI AGCT 2 cut(s) 60, 599
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 2 cut(s) 47, 181
Aor13HI TCCGGA 1 cut(s) 179
Aor51HI AGCGCT 1 cut(s) 639
AoxI GGCC 3 cut(s) 291, 701, 760
ApeKI GCWGC 2 cut(s) 115, 139
ArsI GACNNNNNNTTYG 4 cut(s) 207, 239, 773, 805
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 144, 640
AspS9I GGNCC 2 cut(s) 109, 159
AvaII GGWCC 2 cut(s) 109, 159
BalI TGGCCA 1 cut(s) 762
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 102, 126
BccI CCATC 3 cut(s) 560, 703, 772
BceAI ACGGC 1 cut(s) 4
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 133, 167
BciVI GTATCC 1 cut(s) 564
BcoDI GTCTC 2 cut(s) 47, 181
BfmI CTRYAG 1 cut(s) 575
BfoI RGCGCY 1 cut(s) 641
BfuI GTATCC 1 cut(s) 564
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 2 cut(s) 116, 140
BlsI GCNGC 2 cut(s) 117, 141
Bme18I GGWCC 2 cut(s) 109, 159
BmgT120I GGNCC 2 cut(s) 109, 159
BmiI GGNNCC 3 cut(s) 110, 111, 160
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 3 cut(s) 229, 438, 693
BmuI ACTGGG 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 349
BsaJI CCNNGG 2 cut(s) 151, 299
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 5 cut(s) 26, 161, 191, 517, 547
Bsc4I CCNNNNNNNGG 5 cut(s) 300, 542, 566, 699, 710
Bse1I ACTGG 3 cut(s) 104, 130, 788
BseAI TCCGGA 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 151, 299
BseGI GGATG 4 cut(s) 453, 684, 783, 792
BseLI CCNNNNNNNGG 5 cut(s) 300, 542, 566, 699, 710
BseNI ACTGG 3 cut(s) 104, 130, 788
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 102, 126
BseYI CCCAGC 1 cut(s) 348
BshFI GGCC 3 cut(s) 293, 703, 762
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 95, 172
BslI CCNNNNNNNGG 5 cut(s) 300, 542, 566, 699, 710
BsmAI GTCTC 2 cut(s) 47, 181
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 2 cut(s) 95, 172
BsnI GGCC 3 cut(s) 293, 703, 762
Bsp1286I GDGCHC 1 cut(s) 313
Bsp13I TCCGGA 1 cut(s) 179
BspACI CCGC 4 cut(s) 70, 113, 156, 587
BspANI GGCC 3 cut(s) 293, 703, 762
BspEI TCCGGA 1 cut(s) 179
BspLI GGNNCC 3 cut(s) 110, 111, 160
BspMAI CTGCAG 1 cut(s) 579
BspQI GCTCTTC 1 cut(s) 318
BsrI ACTGG 3 cut(s) 104, 130, 788
BssECI CCNNGG 2 cut(s) 151, 299
BssT1I CCWWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 2 cut(s) 318, 804
BstC8I GCNNGC 2 cut(s) 579, 718
BstF5I GGATG 4 cut(s) 453, 684, 783, 792
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 2 cut(s) 144, 640
BstMAI GTCTC 2 cut(s) 47, 181
BstMWI GCNNNNNNNGC 2 cut(s) 290, 548
BstNSI RCATGY 1 cut(s) 593
BstSFI CTRYAG 1 cut(s) 575
BstV1I GCAGC 2 cut(s) 102, 126
BstXI CCANNNNNNTGG 1 cut(s) 758
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 3 cut(s) 293, 703, 762
BtsCI GGATG 4 cut(s) 453, 684, 783, 792
Cac8I GCNNGC 2 cut(s) 579, 718
CfoI GCGC 2 cut(s) 144, 640
Cfr13I GGNCC 2 cut(s) 109, 159
Csp6I GTAC 3 cut(s) 31, 304, 331
CviAII CATG 7 cut(s) 262, 286, 295, 334, 464, 590, 689
CviQI GTAC 3 cut(s) 31, 304, 331
EaeI YGGCCR 1 cut(s) 760
Eam1104I CTCTTC 2 cut(s) 318, 804
EarI CTCTTC 2 cut(s) 318, 804
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 109, 159
Eco47III AGCGCT 1 cut(s) 639
EcoO109I RGGNCCY 2 cut(s) 109, 159
EcoT14I CCWWGG 1 cut(s) 299
EcoT22I ATGCAT 2 cut(s) 453, 621
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 7 cut(s) 265, 289, 298, 337, 467, 593, 692
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 2 cut(s) 95, 172
FatI CATG 7 cut(s) 261, 285, 294, 333, 463, 589, 688
FauI CCCGC 2 cut(s) 120, 149
FauNDI CATATG 1 cut(s) 659
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 116, 140
FokI GGATG 4 cut(s) 460, 671, 790, 799
Fsp4HI GCNGC 2 cut(s) 116, 140
FspI TGCGCA 1 cut(s) 143
GlaI GCGC 2 cut(s) 143, 639
GluI GCNGC 2 cut(s) 116, 140
GsaI CCCAGC 1 cut(s) 352
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 3 cut(s) 293, 703, 762
HapII CCGG 1 cut(s) 180
HhaI GCGC 2 cut(s) 144, 640
Hin1II CATG 7 cut(s) 265, 289, 298, 337, 467, 593, 692
Hin6I GCGC 2 cut(s) 142, 638
HinP1I GCGC 2 cut(s) 142, 638
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 4 cut(s) 5, 183, 438, 821
HpaII CCGG 1 cut(s) 180
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 5 cut(s) 180, 232, 366, 677, 803
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 3 cut(s) 16, 19, 25
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 6 cut(s) 271, 451, 463, 577, 619, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 548
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 7 cut(s) 265, 289, 298, 337, 467, 593, 692
HspAI GCGC 2 cut(s) 142, 638
KflI GGGWCCC 1 cut(s) 109
Kpn2I TCCGGA 1 cut(s) 179
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 645
Lsp1109I GCAGC 2 cut(s) 102, 126
LweI GCATC 3 cut(s) 229, 438, 693
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 803
MboII GAAGA 3 cut(s) 118, 305, 791
MhlI GDGCHC 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 762
MluCI AATT 1 cut(s) 754
MluNI TGGCCA 1 cut(s) 762
MlyI GAGTC 1 cut(s) 14
Mox20I TGGCCA 1 cut(s) 762
Mph1103I ATGCAT 2 cut(s) 453, 621
MroI TCCGGA 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 41
MscI TGGCCA 1 cut(s) 762
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 290, 548
NdeI CATATG 1 cut(s) 659
NlaIII CATG 7 cut(s) 265, 289, 298, 337, 467, 593, 692
NlaIV GGNNCC 3 cut(s) 110, 111, 160
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 803
NsbI TGCGCA 1 cut(s) 143
NsiI ATGCAT 2 cut(s) 453, 621
NspI RCATGY 1 cut(s) 593
PciSI GCTCTTC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 20
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 3 cut(s) 183, 438, 821
PflMI CCANNNNNTGG 4 cut(s) 300, 542, 566, 699
PkrI GCNGC 2 cut(s) 117, 141
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 2 cut(s) 109, 159
PsiI TTATAA 1 cut(s) 422
Psp5II RGGWCCY 2 cut(s) 109, 159
PspFI CCCAGC 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 110, 111, 160
PspPI GGNCC 2 cut(s) 109, 159
PspPPI RGGWCCY 2 cut(s) 109, 159
PstI CTGCAG 1 cut(s) 579
RsaI GTAC 3 cut(s) 32, 305, 332
RsaNI GTAC 3 cut(s) 31, 304, 331
RseI CAYNNNNRTG 1 cut(s) 756
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 2 cut(s) 116, 140
Sau96I GGNCC 2 cut(s) 109, 159
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 3 cut(s) 229, 438, 693
SfcI CTRYAG 1 cut(s) 575
SinI GGWCC 2 cut(s) 109, 159
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 1 cut(s) 754
SsiI CCGC 4 cut(s) 70, 113, 156, 587
SspI AATATT 1 cut(s) 673
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 754
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 3 cut(s) 183, 438, 821
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 1 cut(s) 803
TseI GCWGC 2 cut(s) 115, 139
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 3 cut(s) 302, 482, 722
TspGWI ACGGA 1 cut(s) 306
Van91I CCANNNNNTGG 4 cut(s) 300, 542, 566, 699
VpaK11BI GGWCC 2 cut(s) 109, 159
XceI RCATGY 1 cut(s) 593
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 41
Zsp2I ATGCAT 2 cut(s) 453, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.