Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Reverse (-)

588266 .. 589693

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCCTCTTTCTCTCCGTCTTTCTCCTTCGCCGACGGCTTTATCTCCGACTACCGGAGGATTTGGTCCATCGAGGAAACAGTGCCGGATTCCTTACTCCGGCGTCCCGACGACGAAGATTGGTTTCTGTTCTTTGGATTCTAGGAAAAGAGGAGATTCCTCTGTTGTTAGGTGTAGCTTAGAAACCGTTAATGTCAGTGTTGGTCAGGTGACGGAGGTCGATAAGGACACGTTCTGGCCCATCGTTAAAGCCGCCGGTGAAAAGCTTGTCGTACTTGACATGTACACTCAATGGTGTGGTCCATGTAAAGTGATTGCCCCTAAATACAAAGCTTTATCAGAGAAGTACGACGACGTTGTGTTTCTAAAGCTTGACTGCAATCCAGATAACCGGCCATTGGCAAAAGAGCTAGGAATAAGAGTGGTTCCAACTTTCAAGATTTTGAAGGATAACAAGGTTGTCAAGGAAGTGACCGGTGCAAAATACGATGATCTGGTTGCAGCGATTGAAACAGCGAGGTCTGCTGCTTCCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

178

Amino Acids

19.33

Weight (kDa)

9.12

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	70 - 170	1.6e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	530
AciI	CCGC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	3 cut(s)	273, 284, 347
AfiI	CCNNNNNNNGG	3 cut(s)	53, 98, 397
AflIII	ACRYGT	2 cut(s)	228, 279
AgeI	ACCGGT	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	436, 445, 509
AluBI	AGCT	5 cut(s)	177, 265, 332, 370, 409
AluI	AGCT	5 cut(s)	177, 265, 332, 370, 409
Aor13HI	TCCGGA	1 cut(s)	530
AoxI	GGCC	2 cut(s)	236, 392
ApeKI	GCWGC	2 cut(s)	500, 524
AsiGI	ACCGGT	1 cut(s)	473
AspS9I	GGNCC	3 cut(s)	65, 237, 299
AsuHPI	GGTGA	2 cut(s)	220, 269
AvaII	GGWCC	2 cut(s)	65, 299
BbvI	GCAGC	2 cut(s)	511, 512
BccI	CCATC	2 cut(s)	76, 248
BceAI	ACGGC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	141, 410
BisI	GCNGC	3 cut(s)	252, 501, 525
BlsI	GCNGC	3 cut(s)	253, 502, 526
Bme18I	GGWCC	2 cut(s)	65, 299
BmgT120I	GGNCC	3 cut(s)	65, 237, 299
BmiI	GGNNCC	1 cut(s)	426
BoxI	GACNNNNGTC	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	102
BsaWI	WCCGGW	3 cut(s)	53, 473, 530
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 98, 397
Bse118I	RCCGGY	3 cut(s)	254, 390, 473
BseAI	TCCGGA	1 cut(s)	530
BseLI	CCNNNNNNNGG	3 cut(s)	53, 98, 397
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	511, 512
BshFI	GGCC	2 cut(s)	238, 394
BshTI	ACCGGT	1 cut(s)	473
BsiSI	CCGG	7 cut(s)	54, 85, 99, 255, 391, 474, 531
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	53, 98, 397
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	238, 394
Bsp13I	TCCGGA	1 cut(s)	530
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	490
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	238, 394
BspEI	TCCGGA	1 cut(s)	530
BspLI	GGNNCC	1 cut(s)	426
BsrFI	RCCGGY	3 cut(s)	254, 390, 473
BsrGI	TGTACA	1 cut(s)	282
BssAI	RCCGGY	3 cut(s)	254, 390, 473
BssMI	GATC	1 cut(s)	490
BssNI	GRCGYC	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	81, 187
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	493
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	283
BstPAI	GACNNNNGTC	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	511, 512
BsuRI	GGCC	2 cut(s)	238, 394
BtsIMutI	CAGTG	2 cut(s)	86, 202
Cfr10I	RCCGGY	3 cut(s)	254, 390, 473
Cfr13I	GGNCC	3 cut(s)	65, 237, 299
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	272, 283, 346
CspAI	ACCGGT	1 cut(s)	473
CviAII	CATG	2 cut(s)	280, 303
CviJI	RGCY	9 cut(s)	38, 177, 238, 251, 265, 332, 370, 394, 409
CviKI_1	RGCY	9 cut(s)	38, 177, 238, 251, 265, 332, 370, 394, 409
CviQI	GTAC	3 cut(s)	272, 283, 346
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	65, 299
FaeI	CATG	2 cut(s)	283, 306
FaiI	YATR	2 cut(s)	281, 304
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	279, 302
Fnu4HI	GCNGC	3 cut(s)	252, 501, 525
Fsp4HI	GCNGC	3 cut(s)	252, 501, 525
FspBI	CTAG	2 cut(s)	141, 410
GluI	GCNGC	3 cut(s)	252, 501, 525
HaeIII	GGCC	2 cut(s)	238, 394
HapII	CCGG	7 cut(s)	54, 85, 99, 255, 391, 474, 531
HgaI	GACGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	283, 306
HindIII	AAGCTT	3 cut(s)	263, 330, 368
HinfI	GANTC	3 cut(s)	88, 137, 155
HpaII	CCGG	7 cut(s)	54, 85, 99, 255, 391, 474, 531
HphI	GGTGA	2 cut(s)	220, 269
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	48, 340
Hpy188III	TCNNGA	4 cut(s)	106, 383, 436, 531
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	5 cut(s)	37, 112, 115, 353, 356
HpyAV	CCTTC	2 cut(s)	36, 439
HpyCH4III	ACNGT	2 cut(s)	81, 187
HpyCH4IV	ACGT	2 cut(s)	230, 354
HpyCH4V	TGCA	3 cut(s)	378, 479, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	1 cut(s)	178
HpySE526I	ACGT	2 cut(s)	230, 354
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	283, 306
Kpn2I	TCCGGA	1 cut(s)	530
Kzo9I	GATC	1 cut(s)	490
Lsp1109I	GCAGC	2 cut(s)	511, 512
MaeI	CTAG	2 cut(s)	141, 410
MaeII	ACGT	2 cut(s)	230, 354
MaeIII	GTNAC	2 cut(s)	208, 469
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	71, 452
MnlI	CCTC	7 cut(s)	15, 50, 66, 143, 169, 208, 510
MroI	TCCGGA	1 cut(s)	530
MseI	TTAA	2 cut(s)	189, 246
MspI	CCGG	7 cut(s)	54, 85, 99, 255, 391, 474, 531
MwoI	GCNNNNNNNGC	1 cut(s)	521
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	2 cut(s)	283, 306
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	2 cut(s)	208, 469
NspI	RCATGY	1 cut(s)	283
PciI	ACATGT	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	88, 137, 155
PinAI	ACCGGT	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	253, 502, 526
PscI	ACATGT	1 cut(s)	279
PshAI	GACNNNNGTC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	3 cut(s)	65, 237, 299
RsaI	GTAC	3 cut(s)	273, 284, 347
RsaNI	GTAC	3 cut(s)	272, 283, 346
SaqAI	TTAA	2 cut(s)	189, 246
SatI	GCNGC	3 cut(s)	252, 501, 525
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	3 cut(s)	65, 237, 299
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	65, 299
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	2 cut(s)	141, 410
TaaI	ACNGT	2 cut(s)	81, 187
TaiI	ACGT	2 cut(s)	233, 357
TaqI	TCGA	2 cut(s)	71, 219
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	88, 137, 155
Tru1I	TTAA	2 cut(s)	189, 246
Tru9I	TTAA	2 cut(s)	189, 246
TscAI	CASTG	2 cut(s)	86, 202
TseFI	GTSAC	2 cut(s)	208, 469
TseI	GCWGC	2 cut(s)	500, 524
Tsp45I	GTSAC	2 cut(s)	208, 469
TspGWI	ACGGA	2 cut(s)	5, 227
TspRI	CASTG	2 cut(s)	86, 202
VpaK11BI	GGWCC	2 cut(s)	65, 299
XceI	RCATGY	1 cut(s)	283
XspI	CTAG	2 cut(s)	141, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.