Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Reverse (-)

46845989 .. 46848040

Gene Structure 2052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTCTTCTCCAGTCTGCCACTCTCCCTCCTCTTCGCTCCATTTGCTGCTCCACTTCGTCGAAACATCCGATCACTTACCCTTCCTCCATTTCAAGCTCAGGCTCAAGCTCAAGCTCAAGCTCAAGCTCAAGCTGGGCTCCCAACAACAAGAAGAATGCTGCCCTTGTGGGCTTGGTGAGGCGGAAGACGGCCTTTGCGGTCAGGTCTAGCTTGGACACTGCCGCCACCGTCGGCCAGGTCACCGAGGTCGACAAGGACACCTTCTGGCCAATCGTCAATGCCGCCGGCGACAAGACCGTCGTCCTTGATATGTACACCCAATGGTGTGGTCCTTGCAAGATTATAGCTCCAAAATATGTAGAATTGTCACAGAAATATGACGATGTCATATTTTTGAAGCTTGATTGTAACCAAGAAAATAAGCAGCCATTGGCAAAGGAGCTTGGAATAAGGGTGGTACCGACTTTCAAGATTTTGAAGCATGACAAGGTTGTAAAAGAAGTGACAGGGGCCAAATTTGATGATTTAGTTGCTGCCATAGAGACTGTTAGAACGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

187

Amino Acids

20.25

Weight (kDa)

9.08

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	81 - 182	8.6e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
Acc65I	GGTACC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	4 cut(s)	184, 200, 225, 285
AcoI	YGGCCR	2 cut(s)	235, 269
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	2 cut(s)	317, 462
AgsI	TTSAA	4 cut(s)	96, 400, 472, 481
AjnI	CCWGG	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	539
AoxI	GGCC	4 cut(s)	192, 235, 269, 513
ApeKI	GCWGC	4 cut(s)	48, 161, 427, 536
ApoI	RAATTY	1 cut(s)	518
Asp718I	GGTACC	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	332, 513
AsuHPI	GGTGA	2 cut(s)	190, 235
AvaII	GGWCC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	4 cut(s)	35, 148, 439, 523
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	6 cut(s)	49, 162, 225, 285, 428, 537
BlsI	GCNGC	6 cut(s)	50, 163, 226, 286, 429, 538
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	332, 513
BmiI	GGNNCC	3 cut(s)	141, 462, 514
BmrFI	CCNGG	1 cut(s)	239
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	100
BpuEI	CTTGAG	5 cut(s)	91, 97, 103, 109, 115
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 71, 101
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	4 cut(s)	35, 148, 439, 523
BseYI	CCCAGC	1 cut(s)	135
BshFI	GGCC	4 cut(s)	194, 237, 271, 515
BshNI	GGYRCC	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	288
BsmAI	GTCTC	1 cut(s)	539
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	194, 237, 271, 515
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	4 cut(s)	184, 200, 225, 285
BspANI	GGCC	4 cut(s)	194, 237, 271, 515
BspCNI	CTCAG	1 cut(s)	113
BspLI	GGNNCC	3 cut(s)	141, 462, 514
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	232, 301, 550
Bst6I	CTCTTC	2 cut(s)	12, 39
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstNI	CCWGG	1 cut(s)	239
BstPAI	GACNNNNGTC	1 cut(s)	302
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	237
BstV1I	GCAGC	4 cut(s)	35, 148, 439, 523
BstV2I	GAAGAC	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	194, 237, 271, 515
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	332, 513
Csp6I	GTAC	2 cut(s)	316, 461
CviAII	CATG	1 cut(s)	485
CviQI	GTAC	2 cut(s)	316, 461
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	2 cut(s)	235, 269
Eam1104I	CTCTTC	2 cut(s)	12, 39
EarI	CTCTTC	2 cut(s)	12, 39
EciI	GGCGGA	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	1 cut(s)	488
FaiI	YATR	7 cut(s)	314, 347, 360, 381, 392, 486, 542
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 248, 280
FatI	CATG	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	6 cut(s)	49, 162, 225, 285, 428, 537
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	6 cut(s)	49, 162, 225, 285, 428, 537
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	6 cut(s)	49, 162, 225, 285, 428, 537
GsaI	CCCAGC	1 cut(s)	139
HaeIII	GGCC	4 cut(s)	194, 237, 271, 515
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	401
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	190, 235
Hpy166II	GTNNAC	2 cut(s)	253, 318
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	2 cut(s)	253, 318
Hpy99I	CGWCG	3 cut(s)	64, 236, 305
HpyAV	CCTTC	2 cut(s)	93, 274
HpyCH4III	ACNGT	3 cut(s)	232, 301, 550
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	488
KpnI	GGTACC	1 cut(s)	464
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	5 cut(s)	44, 56, 145, 355, 442
LpnPI	CCDG	9 cut(s)	26, 87, 121, 190, 224, 251, 253, 301, 495
Lsp1109I	GCAGC	4 cut(s)	35, 148, 439, 523
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	4 cut(s)	241, 369, 410, 505
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	26, 166, 199
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	2 cut(s)	365, 518
MluNI	TGGCCA	1 cut(s)	271
MnlI	CCTC	5 cut(s)	39, 42, 97, 174, 241
Mox20I	TGGCCA	1 cut(s)	271
MreI	CGCCGGCG	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	271
Msp20I	TGGCCA	1 cut(s)	271
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	45
NaeI	GCCGGC	1 cut(s)	289
NdeII	GATC	1 cut(s)	72
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	3 cut(s)	141, 462, 514
NmuCI	GTSAC	3 cut(s)	241, 369, 505
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	163
PdiI	GCCGGC	1 cut(s)	289
PflFI	GACNNNGTC	1 cut(s)	386
PkrI	GCNGC	6 cut(s)	50, 163, 226, 286, 429, 538
PshAI	GACNNNNGTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	237
PspEI	GGTNACC	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	3 cut(s)	141, 462, 514
PspPI	GGNCC	2 cut(s)	332, 513
PsyI	GACNNNGTC	1 cut(s)	386
RsaI	GTAC	2 cut(s)	317, 462
RsaNI	GTAC	2 cut(s)	316, 461
SalI	GTCGAC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	6 cut(s)	49, 162, 225, 285, 428, 537
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	2 cut(s)	332, 513
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	142
SgrAI	CRCCGGYG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	5 cut(s)	106, 112, 118, 124, 130
SmoI	CTYRAG	5 cut(s)	106, 112, 118, 124, 130
Sse9I	AATT	2 cut(s)	365, 518
SsiI	CCGC	4 cut(s)	184, 200, 225, 285
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	3 cut(s)	232, 301, 550
TaqI	TCGA	2 cut(s)	62, 252
TasI	AATT	2 cut(s)	365, 518
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	2 cut(s)	227, 287
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	3 cut(s)	241, 369, 505
TseI	GCWGC	4 cut(s)	48, 161, 427, 536
Tsp45I	GTSAC	3 cut(s)	241, 369, 505
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.