Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Reverse (-)

264068 .. 265680

Gene Structure 1613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCAGCTCTTCTCCAGTCAGCCACTGCCACAGCCACTCTCTCTCATCGCTCCGTCTGCTGCTCCACGACGTCGTCGTCTCCGATCACTTACTCTTCATCTTCTACAACAGCAGCAGCAGGCTTAAGCTGGGCTCCCAACAACAACAGGAATAAGTACAAGCAGAATGCTGCCCAGCACCAGCTTGTGGGCTTCGTCAGGAGGAAGAAGCCCTTTGTCGTCAGCTCTAGCTTGGACACTGCCGCCACCGTCGGCCAGGTCACCGAGGTCGACAAGGATACCTTCTGGCCAATCGTCAATGCCGCCGGCGACAAGACCATCGTCCTTGATATGTACACCCAATGGTGCGGTCCTTGCAAGATTATAGCTCCAAAGTATCAAGAATTGTCGCAGAAATATGACGACGTCATATTTCTGAAGCTTGATTGTAACCAAGAAAACAAGCAGCCATTGGCAAAGGAGCTTGGAATAAGGGTGGTACCGACGTTCAAGATATTGAAGCACGACAAGGTCGTAAAAGAAGTGACAGGGGCGAAATTTGATGATTTAGTTGCTGCCATAGAGACCATCAGAACGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

194

Amino Acids

21.11

Weight (kDa)

9.07

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	87 - 188	5.3e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
AatII	GACGTC	2 cut(s)	74, 408
Acc65I	GGTACC	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	3 cut(s)	243, 303, 348
AcoI	YGGCCR	2 cut(s)	253, 287
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	437
AcyI	GRCGYC	2 cut(s)	71, 405
AfaI	GTAC	3 cut(s)	158, 335, 480
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflII	CTTAAG	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	490, 499
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	9 cut(s)	8, 129, 184, 225, 231, 368, 421, 463, 579
AluI	AGCT	9 cut(s)	8, 129, 184, 225, 231, 368, 421, 463, 579
Alw26I	GTCTC	2 cut(s)	84, 557
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	253, 287
ApeKI	GCWGC	7 cut(s)	5, 60, 113, 116, 170, 445, 554
ApoI	RAATTY	1 cut(s)	536
Asp718I	GGTACC	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	350
BaeI	ACNNNNGTAYC	2 cut(s)	470, 503
BalI	TGGCCA	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	136
BbvI	GCAGC	7 cut(s)	17, 47, 125, 128, 157, 457, 541
BccI	CCATC	2 cut(s)	326, 575
BciT130I	CCWGG	1 cut(s)	257
BciVI	GTATCC	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	84, 557
BfaI	CTAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	271
BisI	GCNGC	9 cut(s)	6, 61, 114, 117, 171, 243, 303, 446, 555
BlsI	GCNGC	9 cut(s)	7, 62, 115, 118, 172, 244, 304, 447, 556
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	135, 480
BmrFI	CCNGG	1 cut(s)	257
BoxI	GACNNNNGTC	1 cut(s)	320
BsaHI	GRCGYC	2 cut(s)	71, 405
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	16
BseXI	GCAGC	7 cut(s)	17, 47, 125, 128, 157, 457, 541
BseYI	CCCAGC	2 cut(s)	129, 174
BshFI	GGCC	2 cut(s)	255, 289
BshNI	GGYRCC	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	84, 557
BsmBI	CGTCTC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	255, 289
Bso31I	GGTCTC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	3 cut(s)	243, 303, 348
BspANI	GGCC	2 cut(s)	255, 289
BspLI	GGNNCC	2 cut(s)	135, 480
BspQI	GCTCTTC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	478
BspTI	CTTAAG	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	557
BsrFI	RCCGGY	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	84
BssNI	GRCGYC	2 cut(s)	71, 405
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	15, 100
BstACI	GRCGYC	2 cut(s)	71, 405
BstAFI	CTTAAG	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	121, 307
BstEII	GGTNACC	1 cut(s)	259
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	2 cut(s)	84, 557
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 354
BstNI	CCWGG	1 cut(s)	257
BstPAI	GACNNNNGTC	1 cut(s)	320
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	255
BstV1I	GCAGC	7 cut(s)	17, 47, 125, 128, 157, 457, 541
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	255, 289
BtgZI	GCGATG	1 cut(s)	32
BtsI	GCAGTG	2 cut(s)	24, 237
BtsIMutI	CAGTG	2 cut(s)	24, 237
Cac8I	GCNNGC	2 cut(s)	121, 307
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	157, 334, 479
CviQI	GTAC	3 cut(s)	157, 334, 479
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	2 cut(s)	253, 287
Eam1104I	CTCTTC	2 cut(s)	15, 100
EarI	CTCTTC	2 cut(s)	15, 100
Eco24I	GRGCYC	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	437
Eco91I	GGTNACC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	84
FaiI	YATR	5 cut(s)	332, 365, 399, 410, 560
FalI	AAGNNNNNCTT	4 cut(s)	197, 229, 266, 298
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	9 cut(s)	6, 61, 114, 117, 171, 243, 303, 446, 555
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	9 cut(s)	6, 61, 114, 117, 171, 243, 303, 446, 555
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	9 cut(s)	6, 61, 114, 117, 171, 243, 303, 446, 555
GsaI	CCCAGC	2 cut(s)	133, 178
HaeIII	GGCC	2 cut(s)	255, 289
HapII	CCGG	1 cut(s)	306
Hin1I	GRCGYC	2 cut(s)	71, 405
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	419
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	271, 336
Hpy188I	TCNGA	3 cut(s)	84, 417, 572
Hpy188III	TCNNGA	3 cut(s)	199, 380, 490
Hpy8I	GTNNAC	2 cut(s)	271, 336
Hpy99I	CGWCG	6 cut(s)	73, 76, 79, 254, 407, 487
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	3 cut(s)	71, 405, 485
HpyCH4V	TGCA	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 354
HpySE526I	ACGT	3 cut(s)	71, 405, 485
Hsp92I	GRCGYC	2 cut(s)	71, 405
KpnI	GGTACC	1 cut(s)	482
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	84
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	5 cut(s)	56, 68, 139, 373, 460
Lsp1109I	GCAGC	7 cut(s)	17, 47, 125, 128, 157, 457, 541
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	3 cut(s)	71, 405, 485
MaeIII	GTNAC	3 cut(s)	259, 428, 523
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	3 cut(s)	87, 93, 217
MhlI	GDGCHC	1 cut(s)	136
MlsI	TGGCCA	1 cut(s)	289
MluCI	AATT	2 cut(s)	383, 536
MluNI	TGGCCA	1 cut(s)	289
MnlI	CCTC	2 cut(s)	195, 259
Mox20I	TGGCCA	1 cut(s)	289
MreI	CGCCGGCG	1 cut(s)	305
MroNI	GCCGGC	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	289
MseI	TTAA	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	289
MspCI	CTTAAG	1 cut(s)	124
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	57, 354
NaeI	GCCGGC	1 cut(s)	307
NdeII	GATC	1 cut(s)	84
NgoMIV	GCCGGC	1 cut(s)	305
NlaIV	GGNNCC	2 cut(s)	135, 480
NmuCI	GTSAC	2 cut(s)	259, 523
PciSI	GCTCTTC	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	3 cut(s)	74, 80, 510
PctI	GAATGC	1 cut(s)	172
PdiI	GCCGGC	1 cut(s)	307
PflFI	GACNNNGTC	3 cut(s)	73, 404, 509
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	9 cut(s)	7, 62, 115, 118, 172, 244, 304, 447, 556
PshAI	GACNNNNGTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	255
PspEI	GGTNACC	1 cut(s)	259
PspFI	CCCAGC	2 cut(s)	129, 174
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	135, 480
PspPI	GGNCC	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	26
PsyI	GACNNNGTC	3 cut(s)	73, 404, 509
RsaI	GTAC	3 cut(s)	158, 335, 480
RsaNI	GTAC	3 cut(s)	157, 334, 479
SalI	GTCGAC	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	9 cut(s)	6, 61, 114, 117, 171, 243, 303, 446, 555
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	136
SgrAI	CRCCGGYG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	383, 536
SsiI	CCGC	3 cut(s)	243, 303, 348
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	3 cut(s)	74, 408, 488
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	383, 536
TatI	WGTACW	2 cut(s)	156, 333
TauI	GCSGC	2 cut(s)	245, 305
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	31, 244
TseFI	GTSAC	2 cut(s)	259, 523
TseI	GCWGC	7 cut(s)	5, 60, 113, 116, 170, 445, 554
Tsp45I	GTSAC	2 cut(s)	259, 523
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	31, 244
Tth111I	GACNNNGTC	3 cut(s)	73, 404, 509
Van91I	CCANNNNNTGG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	1 cut(s)	228
ZraI	GACGTC	2 cut(s)	72, 406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.