Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Forward (+)

24386942 .. 24388372

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTCTGCAGTCAGCCGCACTCTCTCCTCGCTCCGCCGGCGCATCCACATCCCTACCATGCGCCGCCAAGTACCCGATCATTTGCTCCTCCTCTTCTGCTCCCAGTCCGAGCTCCAGCAGAAGCTGCTTCCTTTCGCAGAGGAAGAGTGCGGCGGTGGGAATTGGATTGAGTAAGAAGAAGAGGGGTTCCTGGAAGTGTACGGTGAGGTCGAACTTGGACACTGTCGGTCCCACTGTGAATGTGGGCCAAGTCACGGAGGTCGACAAGGACACCTTCTGGCCCATCGTCAAGGCAGCCGGCGACAAGACCGTCGTCCTTGATATGTATACCCAATGGTGCGGTCCTTGCAAAGTGATTGCTCCAAAATTTCAAGAATTGTCCAAGGAGTACCTCGATGTCGTATTTTTAAAGCTTGACTGTAGCCAAGAAAATAAGCCATTGGCGAAGGAGCTTGGGATAAGGGTGGTGCCAACTTTCAAGATCTTGAAGGACAACAAGGTTGTAAAAGAAGTGACGGGGGCCAAATTTGATGATTTAGTTGTTGCTATAGACGCTGTTAGATCGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

191

Amino Acids

20.4

Weight (kDa)

9.35

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	469
AccI	GTMKAC	2 cut(s)	264, 329
AciI	CCGC	6 cut(s)	18, 36, 66, 152, 155, 342
AcsI	RAATTY	2 cut(s)	368, 527
AfaI	GTAC	3 cut(s)	74, 202, 392
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	3 cut(s)	374, 481, 490
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	5 cut(s)	114, 126, 415, 454, 570
AluI	AGCT	5 cut(s)	114, 126, 415, 454, 570
Alw21I	GWGCWC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	126
AoxI	GGCC	3 cut(s)	247, 281, 522
ApeKI	GCWGC	2 cut(s)	126, 296
ApoI	RAATTY	2 cut(s)	368, 527
AspLEI	GCGC	2 cut(s)	44, 65
AspS9I	GGNCC	5 cut(s)	230, 247, 282, 344, 522
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	230, 344
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	113, 308
BccI	CCATC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	193
BfmI	CTRYAG	3 cut(s)	8, 421, 549
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	5 cut(s)	18, 66, 127, 153, 297
BlsI	GCNGC	5 cut(s)	19, 67, 128, 154, 298
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	2 cut(s)	230, 344
BmgT120I	GGNCC	5 cut(s)	230, 247, 282, 344, 522
BmiI	GGNNCC	4 cut(s)	190, 232, 471, 523
BmrFI	CCNGG	1 cut(s)	193
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	99
BoxI	GACNNNNGTC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse118I	RCCGGY	2 cut(s)	38, 299
Bse1I	ACTGG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	2 cut(s)	44, 50
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	3 cut(s)	18, 79, 82
BseXI	GCAGC	2 cut(s)	113, 308
BshFI	GGCC	3 cut(s)	249, 283, 524
BshNI	GGYRCC	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	39, 300
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	3 cut(s)	249, 283, 524
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	78, 483, 563
BspACI	CCGC	6 cut(s)	18, 36, 66, 152, 155, 342
BspANI	GGCC	3 cut(s)	249, 283, 524
BspLI	GGNNCC	4 cut(s)	190, 232, 471, 523
BspMAI	CTGCAG	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	469
BsrFI	RCCGGY	2 cut(s)	38, 299
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	2 cut(s)	38, 299
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	3 cut(s)	78, 483, 563
BssNAI	GTATAC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	384
Bst1107I	GTATAC	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	5 cut(s)	205, 226, 238, 313, 422
Bst6I	CTCTTC	3 cut(s)	100, 140, 176
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	40, 301
BstF5I	GGATG	2 cut(s)	44, 50
BstHHI	GCGC	2 cut(s)	44, 65
BstKTI	GATC	3 cut(s)	81, 486, 566
BstMBI	GATC	3 cut(s)	78, 483, 563
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 126, 348, 554
BstNI	CCWGG	1 cut(s)	193
BstPAI	GACNNNNGTC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	3 cut(s)	8, 421, 549
BstV1I	GCAGC	2 cut(s)	113, 308
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BstZ17I	GTATAC	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	249, 283, 524
BtsCI	GGATG	2 cut(s)	44, 50
BtsIMutI	CAGTG	2 cut(s)	222, 234
Cac8I	GCNNGC	2 cut(s)	40, 301
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	2 cut(s)	44, 65
Cfr10I	RCCGGY	2 cut(s)	38, 299
Cfr13I	GGNCC	5 cut(s)	230, 247, 282, 344, 522
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	3 cut(s)	73, 201, 391
CviAII	CATG	1 cut(s)	60
CviQI	GTAC	3 cut(s)	73, 201, 391
DpnI	GATC	3 cut(s)	80, 485, 565
DpnII	GATC	3 cut(s)	78, 483, 563
DraI	TTTAAA	1 cut(s)	411
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
Eam1104I	CTCTTC	3 cut(s)	100, 140, 176
EarI	CTCTTC	3 cut(s)	100, 140, 176
EciI	GGCGGA	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	230, 344
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	63
FaiI	YATR	4 cut(s)	61, 326, 330, 551
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	1 cut(s)	59
FblI	GTMKAC	2 cut(s)	264, 329
Fnu4HI	GCNGC	5 cut(s)	18, 66, 127, 153, 297
FokI	GGATG	2 cut(s)	31, 37
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	5 cut(s)	18, 66, 127, 153, 297
GlaI	GCGC	2 cut(s)	43, 64
GluI	GCNGC	5 cut(s)	18, 66, 127, 153, 297
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	249, 283, 524
HapII	CCGG	2 cut(s)	39, 300
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	2 cut(s)	44, 65
Hin1II	CATG	1 cut(s)	63
Hin6I	GCGC	2 cut(s)	42, 63
HinP1I	GCGC	2 cut(s)	42, 63
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	413
HpaII	CCGG	2 cut(s)	39, 300
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	201, 265, 330
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	3 cut(s)	374, 481, 487
Hpy8I	GTNNAC	3 cut(s)	201, 265, 330
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	286, 442, 484
HpyCH4III	ACNGT	5 cut(s)	205, 226, 238, 313, 422
HpyCH4V	TGCA	2 cut(s)	10, 351
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 126, 348, 554
Hsp92II	CATG	1 cut(s)	63
HspAI	GCGC	2 cut(s)	42, 63
KroI	GCCGGC	2 cut(s)	38, 299
KroNI	GCCGGC	2 cut(s)	40, 301
Kzo9I	GATC	3 cut(s)	78, 483, 563
LmnI	GCTCC	6 cut(s)	38, 92, 106, 119, 367, 451
LpnPI	CCDG	7 cut(s)	52, 118, 130, 178, 205, 265, 313
Lsp1109I	GCAGC	2 cut(s)	113, 308
LweI	GCATC	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	253, 514
MalI	GATC	3 cut(s)	80, 485, 565
MboI	GATC	3 cut(s)	78, 483, 563
MboII	GAAGA	4 cut(s)	87, 157, 190, 193
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	4 cut(s)	162, 368, 377, 527
MnlI	CCTC	8 cut(s)	39, 100, 103, 135, 177, 201, 253, 404
MreI	CGCCGGCG	1 cut(s)	38
MroNI	GCCGGC	2 cut(s)	38, 299
MseI	TTAA	1 cut(s)	410
MspI	CCGG	2 cut(s)	39, 300
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	4 cut(s)	39, 126, 348, 554
NaeI	GCCGGC	2 cut(s)	40, 301
NdeII	GATC	3 cut(s)	78, 483, 563
NgoMIV	GCCGGC	2 cut(s)	38, 299
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	4 cut(s)	190, 232, 471, 523
NmuCI	GTSAC	2 cut(s)	253, 514
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PdiI	GCCGGC	2 cut(s)	40, 301
PflFI	GACNNNGTC	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	191
PkrI	GCNGC	5 cut(s)	19, 67, 128, 154, 298
PshAI	GACNNNNGTC	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	4 cut(s)	190, 232, 471, 523
PspPI	GGNCC	5 cut(s)	230, 247, 282, 344, 522
PstI	CTGCAG	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	483
PsyI	GACNNNGTC	1 cut(s)	224
RsaI	GTAC	3 cut(s)	74, 202, 392
RsaNI	GTAC	3 cut(s)	73, 201, 391
SacI	GAGCTC	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	5 cut(s)	18, 66, 127, 153, 297
Sau3AI	GATC	3 cut(s)	78, 483, 563
Sau96I	GGNCC	5 cut(s)	230, 247, 282, 344, 522
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	116
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	3 cut(s)	8, 421, 549
SgrAI	CRCCGGYG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	230, 344
Sse9I	AATT	4 cut(s)	162, 368, 377, 527
SsiI	CCGC	6 cut(s)	18, 36, 66, 152, 155, 342
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	5 cut(s)	205, 226, 238, 313, 422
TaqI	TCGA	4 cut(s)	212, 264, 396, 566
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	4 cut(s)	162, 368, 377, 527
TauI	GCSGC	3 cut(s)	20, 68, 155
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	2 cut(s)	229, 241
TseFI	GTSAC	2 cut(s)	253, 514
TseI	GCWGC	2 cut(s)	126, 296
Tsp45I	GTSAC	2 cut(s)	253, 514
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	2 cut(s)	229, 241
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	230, 344
XapI	RAATTY	2 cut(s)	368, 527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmiI	GTMKAC	2 cut(s)	264, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.