Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Reverse (-)

344094 .. 345584

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG004100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCAAGACATCACCCGTACGTGTGGTCCTTGCAAGATTATAGCTCCAAAATATGTAGAATTGTCACAGAAATATGACGATGTGATATTTTTGAAGCTTGATTGTAACCAAGAAAATAAGCCATTGGCAAAGGAGCTTGGAATAAGGGTGGTACCGACTTTCAAGATTTTGAAGCATGACAAGGTTGTAAAAGAAGTGACGGGGGCCAAATTTGATGATTTAGTTGCTGCCATAGAGACTGTTAGAACGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

84

Amino Acids

9.48

Weight (kDa)

8.46

Isoelectric Point (pI)

20.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	7 - 79	1.3e-17	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	2 cut(s)	19, 153
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	94, 163, 172
AluBI	AGCT	4 cut(s)	44, 97, 136, 252
AluI	AGCT	4 cut(s)	44, 97, 136, 252
Alw26I	GTCTC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	26, 204
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	26, 204
BmiI	GGNNCC	2 cut(s)	153, 205
BsaAI	YACGTR	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	151
BsiWI	CGTACG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	153, 205
BspT107I	GGYRCC	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	26, 204
Csp6I	GTAC	2 cut(s)	18, 152
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	6 cut(s)	44, 97, 121, 136, 206, 252
CviKI_1	RGCY	6 cut(s)	44, 97, 121, 136, 206, 252
CviQI	GTAC	2 cut(s)	18, 152
Eco47I	GGWCC	1 cut(s)	26
FaeI	CATG	1 cut(s)	179
FaiI	YATR	5 cut(s)	41, 54, 75, 177, 233
FatI	CATG	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	95
HphI	GGTGA	1 cut(s)	4
Hpy188III	TCNNGA	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	4, 33
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	179
KpnI	GGTACC	1 cut(s)	155
LmnI	GCTCC	2 cut(s)	49, 133
Lsp1109I	GCAGC	1 cut(s)	214
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	3 cut(s)	63, 104, 196
MluCI	AATT	2 cut(s)	59, 209
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	153, 205
NmuCI	GTSAC	2 cut(s)	63, 196
Pfl23II	CGTACG	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	21
PspLI	CGTACG	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	153, 205
PspPI	GGNCC	2 cut(s)	26, 204
RsaI	GTAC	2 cut(s)	19, 153
RsaNI	GTAC	2 cut(s)	18, 152
SatI	GCNGC	1 cut(s)	228
Sau96I	GGNCC	2 cut(s)	26, 204
SetI	ASST	6 cut(s)	23, 46, 99, 138, 186, 254
SinI	GGWCC	1 cut(s)	26
Sse9I	AATT	2 cut(s)	59, 209
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	23
TasI	AATT	2 cut(s)	59, 209
TseFI	GTSAC	2 cut(s)	63, 196
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	2 cut(s)	63, 196
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.